-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold R., and Mann M. Mass spectrometry-based proteomics. Nature 422 (2003) 198
-
(2003)
Nature
, vol.422
, pp. 198
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
34249935428
-
Genetics. Working the (gene count) numbers: finally, a firm answer?
-
Pennisi E. Genetics. Working the (gene count) numbers: finally, a firm answer?. Science 316 (2007) 1113
-
(2007)
Science
, vol.316
, pp. 1113
-
-
Pennisi, E.1
-
3
-
-
2642520417
-
Top-down proteomics
-
Kelleher N.L. Top-down proteomics. Anal Chem 76 (2004) 197A
-
(2004)
Anal Chem
, vol.76
-
-
Kelleher, N.L.1
-
4
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link A.J., Eng J., Schieltz D.M., et al. Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol 17 (1999) 676
-
(1999)
Nat Biotechnol
, vol.17
, pp. 676
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
-
5
-
-
0024438708
-
Electrospray ionization for mass spectrometry of large biomolecules
-
Fenn J.B., Mann M., Meng C.K., et al. Electrospray ionization for mass spectrometry of large biomolecules. Science 246 (1989) 64
-
(1989)
Science
, vol.246
, pp. 64
-
-
Fenn, J.B.1
Mann, M.2
Meng, C.K.3
-
6
-
-
0024289037
-
Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
-
Karas M., and Hillenkamp F. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem 60 (1988) 2299
-
(1988)
Anal Chem
, vol.60
, pp. 2299
-
-
Karas, M.1
Hillenkamp, F.2
-
7
-
-
0042386232
-
Exploiting the complementary nature of LC/MALDI/MS/MS and LC/ESI/MS/MS for increased proteome coverage
-
Bodnar W.M., Blackburn R.K., Krise J.M., et al. Exploiting the complementary nature of LC/MALDI/MS/MS and LC/ESI/MS/MS for increased proteome coverage. J Am Soc Mass Spectrom 14 (2003) 971
-
(2003)
J Am Soc Mass Spectrom
, vol.14
, pp. 971
-
-
Bodnar, W.M.1
Blackburn, R.K.2
Krise, J.M.3
-
8
-
-
39149087366
-
Hybrid mass spectrometers for tandem mass spectrometry
-
Glish G.L., and Burinsky D.J. Hybrid mass spectrometers for tandem mass spectrometry. J Am Soc Mass Spectrom 19 (2008) 161
-
(2008)
J Am Soc Mass Spectrom
, vol.19
, pp. 161
-
-
Glish, G.L.1
Burinsky, D.J.2
-
9
-
-
33846934658
-
Opportunities and limitations of SELDI-TOF-MS in biomedical research: practical advices
-
Poon T.C. Opportunities and limitations of SELDI-TOF-MS in biomedical research: practical advices. Expert Rev Proteomics 4 (2007) 51
-
(2007)
Expert Rev Proteomics
, vol.4
, pp. 51
-
-
Poon, T.C.1
-
10
-
-
43249122885
-
Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE): advances and perspectives
-
Issaq H., and Veenstra T. Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE): advances and perspectives. Biotechniques 44 (2008) 697
-
(2008)
Biotechniques
, vol.44
, pp. 697
-
-
Issaq, H.1
Veenstra, T.2
-
11
-
-
12944269065
-
Rapid identification of proteins by peptide-mass fingerprinting
-
Pappin D.J., Hojrup P., and Bleasby A.J. Rapid identification of proteins by peptide-mass fingerprinting. Curr Biol 3 (1993) 327
-
(1993)
Curr Biol
, vol.3
, pp. 327
-
-
Pappin, D.J.1
Hojrup, P.2
Bleasby, A.J.3
-
12
-
-
33644898528
-
Automated protein identification by tandem mass spectrometry: issues and strategies
-
Hernandez P., Muller M., and Appel R.D. Automated protein identification by tandem mass spectrometry: issues and strategies. Mass Spectrom Rev 25 (2006) 235
-
(2006)
Mass Spectrom Rev
, vol.25
, pp. 235
-
-
Hernandez, P.1
Muller, M.2
Appel, R.D.3
-
13
-
-
27644555055
-
Interpretation of shotgun proteomic data: the protein inference problem
-
Nesvizhskii A.I., and Aebersold R. Interpretation of shotgun proteomic data: the protein inference problem. Mol Cell Proteomics 4 (2005) 1419
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1419
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
14
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong S.E., Blagoev B., Kratchmarova I., et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1 (2002) 376
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
-
15
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi S.P., Rist B., Gerber S.A., et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 17 (1999) 994
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
-
16
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross P.L., Huang Y.N., Marchese J.N., et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3 (2004) 1154
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
-
17
-
-
0037578010
-
Dissection of proteolytic 18O labeling: endoprotease-catalyzed 16O-to-18O exchange of truncated peptide substrates
-
Yao X., Afonso C., and Fenselau C. Dissection of proteolytic 18O labeling: endoprotease-catalyzed 16O-to-18O exchange of truncated peptide substrates. J Proteome Res 2 (2003) 147
-
(2003)
J Proteome Res
, vol.2
, pp. 147
-
-
Yao, X.1
Afonso, C.2
Fenselau, C.3
-
18
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old W.M., Meyer-Arendt K., Aveline-Wolf L., et al. Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol Cell Proteomics 4 (2005) 1487
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1487
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
-
19
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber S.A., Rush J., Stemman O., et al. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc Natl Acad Sci U S A 100 (2003) 6940
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 6940
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
-
20
-
-
34548392335
-
Analysis of protein phosphorylation on a proteome-scale
-
Collins M.O., Yu L., and Choudhary J.S. Analysis of protein phosphorylation on a proteome-scale. Proteomics 7 (2007) 2751
-
(2007)
Proteomics
, vol.7
, pp. 2751
-
-
Collins, M.O.1
Yu, L.2
Choudhary, J.S.3
-
21
-
-
42249086071
-
Integrated analytical strategies for the study of phosphorylation and glycosylation in proteins
-
Temporini C., Calleri E., Massolini G., et al. Integrated analytical strategies for the study of phosphorylation and glycosylation in proteins. Mass Spectrom Rev 27 (2008) 207
-
(2008)
Mass Spectrom Rev
, vol.27
, pp. 207
-
-
Temporini, C.1
Calleri, E.2
Massolini, G.3
-
22
-
-
1242339568
-
Common interchange standards for proteomics data: public availability of tools and schema
-
Orchard S., Hermjakob H., Julian Jr. R.K., et al. Common interchange standards for proteomics data: public availability of tools and schema. Proteomics 4 (2004) 490
-
(2004)
Proteomics
, vol.4
, pp. 490
-
-
Orchard, S.1
Hermjakob, H.2
Julian Jr., R.K.3
-
23
-
-
34948866795
-
How shall we use the proteomics toolbox for biomarker discovery?
-
Lescuyer P., Hochstrasser D., and Rabilloud T. How shall we use the proteomics toolbox for biomarker discovery?. J Proteome Res 6 (2007) 3371
-
(2007)
J Proteome Res
, vol.6
, pp. 3371
-
-
Lescuyer, P.1
Hochstrasser, D.2
Rabilloud, T.3
-
24
-
-
0141520564
-
Identification and validation of a potential lung cancer serum biomarker detected by matrix-assisted laser desorption/ionization-time of flight spectra analysis
-
Howard B.A., Wang M.Z., Campa M.J., et al. Identification and validation of a potential lung cancer serum biomarker detected by matrix-assisted laser desorption/ionization-time of flight spectra analysis. Proteomics 3 (2003) 1720
-
(2003)
Proteomics
, vol.3
, pp. 1720
-
-
Howard, B.A.1
Wang, M.Z.2
Campa, M.J.3
-
25
-
-
33645721632
-
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
-
Anderson L., and Hunter C.L. Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol Cell Proteomics 5 (2006) 573
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 573
-
-
Anderson, L.1
Hunter, C.L.2
-
26
-
-
46049084849
-
Towards standard protocols and guidelines for urine proteomics: a report on the Human Kidney and Urine Proteome Project (HKUPP) symposium and workshop, 6 October 2007, Seoul, Korea and 1 November 2007, San Francisco, CA, USA
-
Yamamoto T., Langham R.G., Ronco P., et al. Towards standard protocols and guidelines for urine proteomics: a report on the Human Kidney and Urine Proteome Project (HKUPP) symposium and workshop, 6 October 2007, Seoul, Korea and 1 November 2007, San Francisco, CA, USA. Proteomics 8 (2008) 2156
-
(2008)
Proteomics
, vol.8
, pp. 2156
-
-
Yamamoto, T.1
Langham, R.G.2
Ronco, P.3
-
27
-
-
55249088324
-
Optimizing sample handling for urinary proteomics
-
Lee R.S., Monigatti F., Briscoe A.C., et al. Optimizing sample handling for urinary proteomics. J Proteome Res 7 (2008) 4022
-
(2008)
J Proteome Res
, vol.7
, pp. 4022
-
-
Lee, R.S.1
Monigatti, F.2
Briscoe, A.C.3
-
28
-
-
35649000519
-
Practical points in urinary proteomics
-
Thongboonkerd V. Practical points in urinary proteomics. J Proteome Res 6 (2007) 3881
-
(2007)
J Proteome Res
, vol.6
, pp. 3881
-
-
Thongboonkerd, V.1
-
30
-
-
29144495950
-
Exploring the hidden human urinary proteome via ligand library beads
-
Castagna A., Cecconi D., Sennels L., et al. Exploring the hidden human urinary proteome via ligand library beads. J Proteome Res 4 (2005) 1917
-
(2005)
J Proteome Res
, vol.4
, pp. 1917
-
-
Castagna, A.1
Cecconi, D.2
Sennels, L.3
-
31
-
-
33750364830
-
The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins
-
Adachi J., Kumar C., Zhang Y., et al. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol 7 (2006) R80
-
(2006)
Genome Biol
, vol.7
-
-
Adachi, J.1
Kumar, C.2
Zhang, Y.3
-
32
-
-
29544433936
-
Human urine proteome analysis by three separation approaches
-
Sun W., Li F., Wu S., et al. Human urine proteome analysis by three separation approaches. Proteomics 5 (2005) 4994
-
(2005)
Proteomics
, vol.5
, pp. 4994
-
-
Sun, W.1
Li, F.2
Wu, S.3
-
33
-
-
41149121590
-
Temporal variations of the postnatal rat urinary proteome as a reflection of systemic maturation
-
Lee R.S., Monigatti F., Lutchman M., et al. Temporal variations of the postnatal rat urinary proteome as a reflection of systemic maturation. Proteomics 8 (2008) 1097
-
(2008)
Proteomics
, vol.8
, pp. 1097
-
-
Lee, R.S.1
Monigatti, F.2
Lutchman, M.3
-
34
-
-
33947608169
-
Characterization of urinary peptide biomarkers of acute rejection in renal allografts
-
O'Riordan E., Orlova T.N., Podust V.N., et al. Characterization of urinary peptide biomarkers of acute rejection in renal allografts. Am J Transplant 7 (2007) 930
-
(2007)
Am J Transplant
, vol.7
, pp. 930
-
-
O'Riordan, E.1
Orlova, T.N.2
Podust, V.N.3
-
35
-
-
0037844820
-
Characterization of renal allograft rejection by urinary proteomic analysis
-
Clarke W., Silverman B.C., Zhang Z., et al. Characterization of renal allograft rejection by urinary proteomic analysis. Ann Surg 237 (2003) 660
-
(2003)
Ann Surg
, vol.237
, pp. 660
-
-
Clarke, W.1
Silverman, B.C.2
Zhang, Z.3
-
36
-
-
23044462246
-
Urine protein patterns can serve as diagnostic tools in patients with IgA nephropathy
-
Haubitz M., Wittke S., Weissinger E.M., et al. Urine protein patterns can serve as diagnostic tools in patients with IgA nephropathy. Kidney Int 67 (2005) 2313
-
(2005)
Kidney Int
, vol.67
, pp. 2313
-
-
Haubitz, M.1
Wittke, S.2
Weissinger, E.M.3
-
37
-
-
33750591990
-
High resolution proteome/peptidome analysis of body fluids by capillary electrophoresis coupled with MS
-
Schiffer E., Mischak H., and Novak J. High resolution proteome/peptidome analysis of body fluids by capillary electrophoresis coupled with MS. Proteomics 6 (2006) 5615
-
(2006)
Proteomics
, vol.6
, pp. 5615
-
-
Schiffer, E.1
Mischak, H.2
Novak, J.3
-
38
-
-
2442670130
-
Proteomic patterns established with capillary electrophoresis and mass spectrometry for diagnostic purposes
-
Weissinger E.M., Wittke S., Kaiser T., et al. Proteomic patterns established with capillary electrophoresis and mass spectrometry for diagnostic purposes. Kidney Int 65 (2004) 2426
-
(2004)
Kidney Int
, vol.65
, pp. 2426
-
-
Weissinger, E.M.1
Wittke, S.2
Kaiser, T.3
-
39
-
-
33645747471
-
Predicting the clinical outcome of congenital unilateral ureteropelvic junction obstruction in newborn by urinary proteome analysis
-
Decramer S., Wittke S., Mischak H., et al. Predicting the clinical outcome of congenital unilateral ureteropelvic junction obstruction in newborn by urinary proteome analysis. Nat Med 12 (2006) 398
-
(2006)
Nat Med
, vol.12
, pp. 398
-
-
Decramer, S.1
Wittke, S.2
Mischak, H.3
-
40
-
-
0142250869
-
Proteomic profiling of urinary proteins in renal cancer by surface enhanced laser desorption ionization and neural-network analysis: identification of key issues affecting potential clinical utility
-
Rogers M.A., Clarke P., Noble J., et al. Proteomic profiling of urinary proteins in renal cancer by surface enhanced laser desorption ionization and neural-network analysis: identification of key issues affecting potential clinical utility. Cancer Res 63 (2003) 6971
-
(2003)
Cancer Res
, vol.63
, pp. 6971
-
-
Rogers, M.A.1
Clarke, P.2
Noble, J.3
-
41
-
-
46449092674
-
Cryotherapy for prostate cancer: what we know, what we need to know
-
Theodorescu D. Cryotherapy for prostate cancer: what we know, what we need to know. J Urol 180 (2008) 437
-
(2008)
J Urol
, vol.180
, pp. 437
-
-
Theodorescu, D.1
-
42
-
-
52049112613
-
Isolation and identification of potential urinary microparticle biomarkers of bladder cancer
-
Smalley D.M., Sheman N.E., Nelson K., et al. Isolation and identification of potential urinary microparticle biomarkers of bladder cancer. J Proteome Res 7 (2008) 2088
-
(2008)
J Proteome Res
, vol.7
, pp. 2088
-
-
Smalley, D.M.1
Sheman, N.E.2
Nelson, K.3
-
43
-
-
27144531588
-
Proteome analysis of gelatin-bound urinary proteins from patients with bladder cancers
-
Saito M., Kimoto M., Araki T., et al. Proteome analysis of gelatin-bound urinary proteins from patients with bladder cancers. Eur Urol 48 (2005) 865
-
(2005)
Eur Urol
, vol.48
, pp. 865
-
-
Saito, M.1
Kimoto, M.2
Araki, T.3
-
44
-
-
27744504444
-
Stage-dependent increase of orosomucoid and zinc-alpha2-glycoprotein in urinary bladder cancer
-
Irmak S., Tilki D., Heukeshoven J., et al. Stage-dependent increase of orosomucoid and zinc-alpha2-glycoprotein in urinary bladder cancer. Proteomics 5 (2005) 4296
-
(2005)
Proteomics
, vol.5
, pp. 4296
-
-
Irmak, S.1
Tilki, D.2
Heukeshoven, J.3
-
46
-
-
36348936819
-
Searching urinary tumor markers for bladder cancer using a two-dimensional differential gel electrophoresis (2D-DIGE) approach
-
Orenes-Pinero E., Corton M., Gonzalez-Peramato P., et al. Searching urinary tumor markers for bladder cancer using a two-dimensional differential gel electrophoresis (2D-DIGE) approach. J Proteome Res 6 (2007) 4440
-
(2007)
J Proteome Res
, vol.6
, pp. 4440
-
-
Orenes-Pinero, E.1
Corton, M.2
Gonzalez-Peramato, P.3
-
47
-
-
33244487021
-
Protein profiling of bladder cancer using the 2D-PAGE and SELDI-TOF-MS technique
-
Langbein S., Lehmann J., Harder A., et al. Protein profiling of bladder cancer using the 2D-PAGE and SELDI-TOF-MS technique. Technol Cancer Res Treat 5 (2006) 67
-
(2006)
Technol Cancer Res Treat
, vol.5
, pp. 67
-
-
Langbein, S.1
Lehmann, J.2
Harder, A.3
-
49
-
-
31544463826
-
Proteomic patterns and prediction of glomerulosclerosis and its mechanisms
-
Xu B.J., Shyr Y., Liang X., et al. Proteomic patterns and prediction of glomerulosclerosis and its mechanisms. J Am Soc Nephrol 16 (2005) 2967
-
(2005)
J Am Soc Nephrol
, vol.16
, pp. 2967
-
-
Xu, B.J.1
Shyr, Y.2
Liang, X.3
-
50
-
-
33750607144
-
Biomarker discovery by imaging mass spectrometry: transthyretin is a biomarker for gentamicin-induced nephrotoxicity in rat
-
Meistermann H., Norris J.L., Aerni H.R., et al. Biomarker discovery by imaging mass spectrometry: transthyretin is a biomarker for gentamicin-induced nephrotoxicity in rat. Mol Cell Proteomics 5 (2006) 1876
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 1876
-
-
Meistermann, H.1
Norris, J.L.2
Aerni, H.R.3
-
51
-
-
39749116756
-
Monitoring mouse prostate development by profiling and imaging mass spectrometry
-
Chaurand P., Rahman M.A., Hunt T., et al. Monitoring mouse prostate development by profiling and imaging mass spectrometry. Mol Cell Proteomics 7 (2008) 411
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 411
-
-
Chaurand, P.1
Rahman, M.A.2
Hunt, T.3
-
52
-
-
4043141477
-
Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research
-
Everley P.A., Krijgsveld J., Zetter B.R., et al. Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research. Mol Cell Proteomics 3 (2004) 729
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 729
-
-
Everley, P.A.1
Krijgsveld, J.2
Zetter, B.R.3
-
53
-
-
29544452310
-
A quantitative proteomic analysis of growth factor-induced compositional changes in lipid rafts of human smooth muscle cells
-
MacLellan D.L., Steen H., Adam R.M., et al. A quantitative proteomic analysis of growth factor-induced compositional changes in lipid rafts of human smooth muscle cells. Proteomics 5 (2005) 4733
-
(2005)
Proteomics
, vol.5
, pp. 4733
-
-
MacLellan, D.L.1
Steen, H.2
Adam, R.M.3
-
54
-
-
55049129918
-
A multiplexed quantitative strategy for membrane proteomics: opportunities for mining therapeutic targets for autosomal-dominant polycystic kidney disease
-
Han C.L., Chien C.W., Chen W.C., et al. A multiplexed quantitative strategy for membrane proteomics: opportunities for mining therapeutic targets for autosomal-dominant polycystic kidney disease. Mol Cell Proteomics 7 (2008) 1983
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1983
-
-
Han, C.L.1
Chien, C.W.2
Chen, W.C.3
-
55
-
-
57049104077
-
Novel MMP-9 substrates in cancer cells revealed by a label-free quantitative proteomics approach
-
Xu D., Suenaga N., Edelmann M.J., et al. Novel MMP-9 substrates in cancer cells revealed by a label-free quantitative proteomics approach. Mol Cell Proteomics 7 (2008) 2215
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 2215
-
-
Xu, D.1
Suenaga, N.2
Edelmann, M.J.3
|