Isolation and characterization of glyceraldehyde-3-phosphate dehydrogenase gene of Trichoderma virens UKM1

Biotechnology

Volumn 8, Issue 2, 2009, Pages 194-203

  Oh, S S L ^a   Bakar, F D A ^a   Adnan, A M ^a   Mahadi, N M ^b   Hassan, O ^a   Murad, A M A ^a  

^a UNIVERSITI KEBANGSAAN MALAYSIA   (Malaysia)

^b MALAYSIA GENOME INSTITUTE   (Malaysia)

Author keywords

Glyceraldehyde 3 phosphate dehydrogenase; Promoter; Trichoderma virens

Indexed keywords

AMINO ACID SEQUENCE; CDNA SEQUENCE; DNA WALKING; EXPRESSED SEQUENCE TAGS; FILAMENTOUS FUNGI; FLANKING REGIONS; FLANKING SEQUENCE; GENE SEQUENCES; GENETIC TOOLS; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; HETEROLOGOUS GENES; ISOLATION AND CHARACTERIZATION; NON-CODING REGION; OPEN READING FRAME; PHYLOGENETIC ANALYSIS; POLYPEPTIDE CHAIN; PROMOTER; REVERSE TRANSCRIPTION-POLYMERASE CHAIN REACTION; SEQUENCE COMPARISONS; TRANSCRIPTION START SITE; TRICHODERMA VIRENS;

AMINATION; AMINES; AMINO ACIDS; ENZYMES; FUNGI; NUCLEIC ACIDS; ORGANIC ACIDS; TRANSCRIPTION;

GENES;

ASCOMYCOTA; FUNGI; HYPOCREA VIRENS; TRICHODERMA;

EID: 68049135796     PISSN: 1682296X     EISSN: 16822978     Source Type: Journal    
DOI: 10.3923/biotech.2009.194.203     Document Type: Article

References (40)

1. Abd-Aziz, S., C. C. Fernandez, M. M. Salleh, R. M. Illias and M. A. Hassan, 2008a. Effect of agitation and aeration rates on chitinase production Using Trichoderma virens UKM1 in 2-1 stirred tank reactor. Applied Biochem. Biotechnol., 150:193-204.
2. Abd-Aziz, S., L. S. Teoh, N. Alitheen, N. Shahab and K. Kamaruddin, 2008b. Microbial degradation of chitin materials by Trichoderma virens UKM1. J. Biol. Sci., 8:52-59.
3. Baek, J. M., C. R. Howell and C. M. Kenerley, 1999. The role of extracellular chitinase from Trichoderma virens Gv29-8 in the biocontrol of Rhizoctonia solani. Curr. Genet., 35:41-50.
4. Barbosa, M. S., S. N. Ba'o, P. F. Andreotti, F. P. De Faria, M. S. S. Felipe, L. D. S. Feitosa, M. J. S. Mendes-Giannini and C. M. D. A. Soares, 2006. Glyceraldehyde-3-phosphate dehydrogenase of Paracoccidioides brasiliensis is a cell surface protein involved in fungal adhesion to extracellular matrix proteins and interaction with cells. Infect. Immunol., 74:382-389.
5. Chet, I. and L. Chernin, 2002. Biocontrol, Microbial Agents in Soil. In: Encyclopedia of Environmental Microbiology, Bitton, G. (Ed.). Wiley, New York.
6. Djonovic, S., M. Pozo, L. J. Dangott, C. R. Howell and CM. Kenerley, 2006. Sml, a proteinaceous elicitor secreted by the biocontrol fungus Trichoderma virens induces plant defense responses and systemic resistance. Mol. Plant Microbe Interact, 19:838-853.
7. Douhan, G. W. and D. M. Rizzo, 2005. Phylogenetic divergence in a local population of the ectomycorrhizal fungus Cenococcum geophilum. New Phytol., 166:263-271.
8. Emanuelsson, O., S. Brunak, G. von Heijne and H. Nielsen, 2007. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protocols, 2:953-971.
9. Fei, X., M. W. Zhao and Y. X. Li, 2006. Cloning and sequence analysis of a glyceraldehyde-3-phosphate dehydrogenase gene from Ganoderma lucidum. J. Microbiol., 44:512-522.
10. Felsenstein, J. and G. A. Churchill, 1996. A Hidden Markov Model approach to variation among sites in rates of evolution. Mol. Biol. Evol., 13:93-104.
11. Fravel, D., 2005. Commercialization and implementation of biocontrol. Annu. Rev. Phytopathol., 43:337-359.
12. Goudout-Crozel, V., D. Caillol, M. Djabali and A. J. Dessein, 2004. The major parasite surface antigen associated with human resistence to schistosomiasis is a 37 kDa glyceraldehyde-3-P-dehydrogenase. J. Exp. Med., 170:2065-2074.
13. Halaouli, S., E. Record, L. Casalot, M. Hamdi, J. C. Sigoillot, M. Asther and A. Lomascolo, 2006. Cloning and characterization of a tyrosinase gene from the white-rot fungus Pycnoporus sanguineus and overproduction of the recombinant protein in Aspergillus niger. Applied Microbiol. Biotechnol., 70:580-589.
14. Harman, G. E., C. R. Howell, A. Viterbo, I. Chet and M. Lorito, 2004. Trichoderma species-opportunistic, avirulent plant symbionts. Nat. Rev. Microbiol., 2:43-56.
15. Harmsen, M. C., F. H. J. Schuren, S. M. Moukha, CM. Van Zuilen, P. J. Punt and J. G. H. Wessels, 1992. Sequence analysis of the glyceraldehyde-3- phosphate dehydrogenase genes from the basidiomycetes Schizophyllum commune, Phanerochaete chrysosporium and Agaricus bisporus. Curr. Genet., 22:447-454.
16. Holland, J. P. and M. J. Holland, 1979. The primary structure of a glyceraldehyde-3-phosphate dehydrogenase gene from Saccharomyces cerevisiae. J. Biol. Chem., 254:9839-9845.
17. Hutchinson, C. M., 1999. Trichoderma virens-inoculated composted chicken manure for biological weed control. Biol. Control, 16:217-222.
18. Johannesson, H. and J. Stenlid, 2003. Molecular markers reveal genetic isolation and phylogeography of the S and F intersterility groups of the wood-decay fungus Heterobasidium annosum. Mol. Phylogenet. Evol., 29:94-101.
19. Kilaru, S. and U. Kües, 2005. Comparison of GPD genes and their protein products in basidiomycetes. Fungal Genet. Newslett., 52:18-23.
20. Kozak, M., 1989. The scanning model for translation: An update. J. Cell Biol., 108:229-241.
21. Kumar, S., K. Tamura and M. Nei, 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform., 5:150-163.
22. Laliotis, G. P., I. Bizelis, A. Argyrokastritis and E. Rogdakis, 2007. Cloning, characterization and computational analysis of the 5' regulatory region of ovine glucose 6-phosphate dehydrogenase gene. Comp. Biochem. Physiol. Biochem. Mol. Biol., 147:627-634.
23. Larkin, M. A., G. Blackshields, N. P. Brown, R. Chenna and P. A McGettigan et al., 2007. Clustal W and Clustal X version 2.0. Bioinformatics, 23:2947-2948.
24. Larsen, G. G., K. F. Appel, A. M. Wolff, J. Nielsen and J. Arnau, 2004. Characterization of the Mucor circinelloides regulated promoter GPDlp. Curr. Genet., 45:225-234.
25. Menéndez, C., L. Herna'ndez, A. Banguela and J. Pai's, 2004. Functional production and secretion of the Gluconacetobacter diazotrophicus fructosereleasing exo-levanase (LsdB) in Pichia pastoris. Enzyme Microbial. Technol., 34:446-452.
26. Meyer, S. L. F., D. P. Roberts, D. J. Chitwood, L. K. Carta, R. D. Lumsden and W. L. Mao, 2001. Application of Burkholderia cepacia and Trichoderma virens, alone and in combinations, against Meloidogyne incognita on bell pepper. Nematropica, 31:75-86.
27. Modun, B. and P. Williams, 1999. The staphylococcal transferrin-binding protein is a cell wall glyceraldehyde-3-phosphate dehydrogenase. Infect. Immunol, 67:1086-1092.
28. Nitta, Y., Y. Miyazaki, M. Nakamura, Y. Iimura, K. Shishido, S. Kajita and N. Morohoshi, 2004. Molecular cloning of the promoter region of the glyceraldehyde-3-phosphate dehydrogenase gene that contributes to the construction of a new transformation system in Coriolus versicolor. Mycoscience, 45:131-136.
29. Olsen, K. W., D. Moras and M. G. Rossmann, 1975. Sequence variability and structure of D glyceraldehyde-3-phosphate dehydrogenase. J. Biol. Chem., 250:9313-9321.
30. Pich, U. and I. Schubert 1993. Mediprep method for isolation of DNA from plant samples with a high content of polyphenolics. Nucl. Acids Res., 21:3328-3328.
31. Punt, P. J., M. A. Dingemanse, B. J. M. Jacobs-Meijsing, P. H. Pouwels, C. A. M. J. J. van den Hondel, 1988. Isolation and characterization of the glyceraldehyde-3-phosphate dehydrogenase gene of Aspergillus nidulans. Gene, 69:49-57.
32. Sambrook, J. and D. W. Russell, 2001. Molecular Cloning: A Laboratory Manual. 3rd Edn, Cold Spring Harbor Laboratory Press, New York.
33. Smith, T. L., 1989. Disparate evolution of yeasts and filamentous fungi indicated by phylogenetic analysis of glyceraldehyde-3-phosphate dehydrogenase genes. Proc. Natl. Acad. Sci. USA., 86:7063-7066.
34. Smith, T. L. and S. A. Leong, 1990. Isolation and characterization of an Ustilago maydis glyceraldehyde-3-phosphate dehydrogenaseencoding gene. Gene, 93:111-117.
35. Stanke, M., R. Steinkamp, S. Waack and B. Morgenstern, 2004. AUGUSTUS: A web server for gene finding in eukaryotes. Nucl. Acids Res., 32:309-312.
36. Templeton, M. D., E. H. Rikkerink, S. L. Solon and R. N. Crowhurst, 1992. Cloning and molecular characterization of the glyceraldehyde-3-phosphate dehydrogenase-encoding gene and cDNA from the plant pathogenic fungus Glomerella cingulata. Gene, 122:225-230.
37. Vassileva, A., D. A. Chugh, S. Swaminathan and N. Khanna, 2001. Expression of hepatitis B surface antigen in the methylotrophic yeast Pichia pastoris using the GAP promoter. J. Biotechnol., 88:21-35.
38. Vastag, M., Z. Kasza, K. ACS, T. Papp, H. Schwab and C. Vagvolgyi, 2004. Cloning and sequence analysis of the glyceraldehyde-3-phosphate dehydrogenase gene from the zygomycetes fungus Rhizomucor miehei. Antonie van Leeuwenhoek, 86:111-119.
39. Wahle, E. and U. Ruegsegger, 1999. 3'-End processes of pre-mRNA in eukaryotes. FEMS Microbiol. Rev., 23:277-295.
40. Xu, B., J. R. Wild and CM. Kenerley, 1996. Enhanced expression of a bacterial gene for pesticide degradation in a common soil fungus. J. Ferment. Bioeng., 81:473-481.