메뉴 건너뛰기




Volumn 76, Issue 3, 2009, Pages 598-607

Gene ontology functional annotations at the structural domain level

Author keywords

Functional annotation; Gene ontology; Protein domain; Protein function; SCOP

Indexed keywords

ELONGATION FACTOR 1ALPHA; GENE PRODUCT; PROTEIN TYROSINE KINASE; TRYPTOPHAN SYNTHASE;

EID: 68049117332     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22373     Document Type: Article
Times cited : (12)

References (17)
  • 1
    • 0035816218 scopus 로고    scopus 로고
    • Domain combinations in archaeal, eubacterial and eukaryotic proteomes
    • Apic G, Gough J, Teichmann SA. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J Mol Biol 2001;310:311-325.
    • (2001) J Mol Biol , vol.310 , pp. 311-325
    • Apic, G.1    Gough, J.2    Teichmann, S.A.3
  • 3
    • 33846059668 scopus 로고    scopus 로고
    • The generation of new protein functions by the combination of domains
    • Bashton M, Chothia C. The generation of new protein functions by the combination of domains. Structure 2007;15:85-99.
    • (2007) Structure , vol.15 , pp. 85-99
    • Bashton, M.1    Chothia, C.2
  • 4
    • 0346801873 scopus 로고    scopus 로고
    • Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R. The gene ontology (GO) database and informatics resource. Nucleic Acids Res 2004;32 (Database issue):D258-D261.
    • Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R. The gene ontology (GO) database and informatics resource. Nucleic Acids Res 2004;32 (Database issue):D258-D261.
  • 6
    • 0037251964 scopus 로고    scopus 로고
    • Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 2003;31:315-318.
    • Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 2003;31:315-318.
  • 7
    • 33846044585 scopus 로고    scopus 로고
    • The SUPERFAMILY database in 2007: Families and functions
    • Database issue:D308-313
    • Wilson D, Madera M, Vogel C, Chothia C, Gough J. The SUPERFAMILY database in 2007: families and functions. Nucleic Acids Res 2007;35 (Database issue):D308-313.
    • (2007) Nucleic Acids Res , pp. 35
    • Wilson, D.1    Madera, M.2    Vogel, C.3    Chothia, C.4    Gough, J.5
  • 8
    • 33846086102 scopus 로고    scopus 로고
    • Searchlight on domains
    • Riley M. Searchlight on domains. Structure 2007;15:1-2.
    • (2007) Structure , vol.15 , pp. 1-2
    • Riley, M.1
  • 11
    • 84860194908 scopus 로고    scopus 로고
    • Available at
    • The Superligands Server. Available at http://bioinf.charite.de/ superligands.
    • The Superligands Server
  • 12
    • 0036249270 scopus 로고    scopus 로고
    • Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings
    • Holliday JD, Hu CY, Willett P. Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings. Comb Chem High Throughput Screen 2002;5:155-166.
    • (2002) Comb Chem High Throughput Screen , vol.5 , pp. 155-166
    • Holliday, J.D.1    Hu, C.Y.2    Willett, P.3
  • 15
    • 0038437326 scopus 로고    scopus 로고
    • Available at
    • Wikipedia. ROC Analysis. Available at http://en.wikipedia.org/wiki/ Receiver-operating-characteristic.
    • ROC Analysis
  • 16
    • 13244268370 scopus 로고    scopus 로고
    • GOtcha: A new method for prediction of protein function assessed by the annotation of seven genomes
    • Martin DM, Berriman M, Barton GJ. GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinformatics 2004;5:178.
    • (2004) BMC Bioinformatics , vol.5 , pp. 178
    • Martin, D.M.1    Berriman, M.2    Barton, G.J.3
  • 17
    • 13444254300 scopus 로고    scopus 로고
    • PDBsum more: New summaries and analyses of the known 3D structures of proteins and nucleic acids
    • Laskowski RA, Chistyakov VV, Thornton JM. PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res 2005;33:D266-D268.
    • (2005) Nucleic Acids Res , vol.33
    • Laskowski, R.A.1    Chistyakov, V.V.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.