-
1
-
-
0043269205
-
The RNA polymerase II core promoter
-
Smale,S.T. and Kadonaga,J.T. (2003) The RNA polymerase II core promoter. Annu. Rev. Biochem., 72, 449-479.
-
(2003)
Annu. Rev. Biochem
, vol.72
, pp. 449-479
-
-
Smale, S.T.1
Kadonaga, J.T.2
-
2
-
-
33947115777
-
Perspectives on the RNA polymerase II core promoter
-
Juven-Gershon,T., Hsu,J.Y. and Kadonaga,J.T. (2006) Perspectives on the RNA polymerase II core promoter. Biochem. Soc. Trans., 34, 1047-1050.
-
(2006)
Biochem. Soc. Trans
, vol.34
, pp. 1047-1050
-
-
Juven-Gershon, T.1
Hsu, J.Y.2
Kadonaga, J.T.3
-
3
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
Basehoar,A.D., Zanton,S.J. and Pugh,B.F. (2004) Identification and distinct regulation of yeast TATA box-containing genes. Cell, 116, 699-709.
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
4
-
-
0036239962
-
Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast
-
Mencia,M., Moqtaderi,Z., Geisberg,J.V., Kuras,L. and Struhl,K. (2002) Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast. Mol. Cell, 9, 823-833.
-
(2002)
Mol. Cell
, vol.9
, pp. 823-833
-
-
Mencia, M.1
Moqtaderi, Z.2
Geisberg, J.V.3
Kuras, L.4
Struhl, K.5
-
5
-
-
0012253746
-
Computational analysis of core promoters in the Drosophila genome
-
RESEARCH0087
-
Ohler,U., Liao,G.C., Niemann,H. and Rubin,G.M. (2002) Computational analysis of core promoters in the Drosophila genome. Genome Biol., 3, RESEARCH0087.
-
(2002)
Genome Biol
, vol.3
-
-
Ohler, U.1
Liao, G.C.2
Niemann, H.3
Rubin, G.M.4
-
6
-
-
17444371719
-
Synergy of human Pol II core promoter elements revealed by statistical sequence analysis
-
Gershenzon,N.I. and Ioshikhes,I.P. (2005) Synergy of human Pol II core promoter elements revealed by statistical sequence analysis. Bioinformatics, 21, 1295-1300.
-
(2005)
Bioinformatics
, vol.21
, pp. 1295-1300
-
-
Gershenzon, N.I.1
Ioshikhes, I.P.2
-
7
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
Kim,T.H., Barrera,L.O., Zheng,M., Qu,C., Singer,M.A., Richmond,T.A., Wu,Y., Green,R.D. and Ren,B. (2005) A high-resolution map of active promoters in the human genome. Nature, 436, 876-880.
-
(2005)
Nature
, vol.436
, pp. 876-880
-
-
Kim, T.H.1
Barrera, L.O.2
Zheng, M.3
Qu, C.4
Singer, M.A.5
Richmond, T.A.6
Wu, Y.7
Green, R.D.8
Ren, B.9
-
8
-
-
33846214719
-
Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters
-
Yang,C., Bolotin,E., Jiang,T., Sladek,F.M. and Martinez,E. (2007) Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters. Gene, 389, 52-65.
-
(2007)
Gene
, vol.389
, pp. 52-65
-
-
Yang, C.1
Bolotin, E.2
Jiang, T.3
Sladek, F.M.4
Martinez, E.5
-
9
-
-
0024557039
-
The "initiator" as a transcription control element
-
Smale,S.T. and Baltimore,D. (1989) The "initiator" as a transcription control element. Cell, 57, 103-113.
-
(1989)
Cell
, vol.57
, pp. 103-113
-
-
Smale, S.T.1
Baltimore, D.2
-
10
-
-
0033200098
-
DNA binding site selection by RNA polymerase II TAFs: A TAF(II)250-TAF(II)150 complex recognizes the initiator
-
Chalkley,G.E. and Verrijzer,C.P. (1999) DNA binding site selection by RNA polymerase II TAFs: A TAF(II)250-TAF(II)150 complex recognizes the initiator. EMBO J., 18, 4835-4845.
-
(1999)
EMBO J
, vol.18
, pp. 4835-4845
-
-
Chalkley, G.E.1
Verrijzer, C.P.2
-
11
-
-
0028345413
-
Direct recognition of initiator elements by a component of the transcription factor IID complex
-
Kaufmann,J. and Smale,S.T. (1994) Direct recognition of initiator elements by a component of the transcription factor IID complex. Genes Dev., 8, 821-829.
-
(1994)
Genes Dev
, vol.8
, pp. 821-829
-
-
Kaufmann, J.1
Smale, S.T.2
-
12
-
-
0029055811
-
Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II
-
Verrijzer,C.P., Chen,J.L., Yokomori,K. and Tjian,R. (1995) Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II. Cell, 81, 1115-1125.
-
(1995)
Cell
, vol.81
, pp. 1115-1125
-
-
Verrijzer, C.P.1
Chen, J.L.2
Yokomori, K.3
Tjian, R.4
-
13
-
-
0030669466
-
The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila
-
Burke,T.W. and Kadonaga,J.T. (1997) The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila. Genes Dev., 11, 3020-3031.
-
(1997)
Genes Dev
, vol.11
, pp. 3020-3031
-
-
Burke, T.W.1
Kadonaga, J.T.2
-
14
-
-
0032466113
-
The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box
-
Burke,T.W., Willy,P.J., Kutach,A.K., Butler,J.E. and Kadonaga,J.T. (1998) The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box. Cold Spring Harb. Symp. Quant. Biol., 63, 75-82.
-
(1998)
Cold Spring Harb. Symp. Quant. Biol
, vol.63
, pp. 75-82
-
-
Burke, T.W.1
Willy, P.J.2
Kutach, A.K.3
Butler, J.E.4
Kadonaga, J.T.5
-
15
-
-
26944492656
-
A core promoter element downstream of the TATA box that is recognized by TFIIB
-
Deng,W. and Roberts,S.G. (2005) A core promoter element downstream of the TATA box that is recognized by TFIIB. Genes Dev., 19, 2418-2423.
-
(2005)
Genes Dev
, vol.19
, pp. 2418-2423
-
-
Deng, W.1
Roberts, S.G.2
-
16
-
-
0031882652
-
New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB
-
Lagrange,T., Kapanidis,A.N., Tang,H., Reinberg,D. and Ebright,R.H. (1998) New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB. Genes Dev., 12, 34-44.
-
(1998)
Genes Dev
, vol.12
, pp. 34-44
-
-
Lagrange, T.1
Kapanidis, A.N.2
Tang, H.3
Reinberg, D.4
Ebright, R.H.5
-
17
-
-
27144506577
-
Functional characterization of core promoter elements: The downstream core element is recognized by TAF1
-
Lee,D.H., Gershenzon,N., Gupta,M., Ioshikhes,I.P., Reinberg,D. and Lewis,B.A. (2005) Functional characterization of core promoter elements: the downstream core element is recognized by TAF1. Mol. Cell Biol. 25, 9674-9686.
-
(2005)
Mol. Cell Biol
, vol.25
, pp. 9674-9686
-
-
Lee, D.H.1
Gershenzon, N.2
Gupta, M.3
Ioshikhes, I.P.4
Reinberg, D.5
Lewis, B.A.6
-
19
-
-
34447503929
-
Differential regulation of NF-kappaB by elongation factors is determined by core promoter type
-
Amir-Zilberstein,L., Ainbinder,E., Toube,L., Yamaguchi,Y., Handa,H. and Dikstein,R. (2007) Differential regulation of NF-kappaB by elongation factors is determined by core promoter type. Mol. Cell Biol., 27, 5246-5259.
-
(2007)
Mol. Cell Biol
, vol.27
, pp. 5246-5259
-
-
Amir-Zilberstein, L.1
Ainbinder, E.2
Toube, L.3
Yamaguchi, Y.4
Handa, H.5
Dikstein, R.6
-
20
-
-
1542314246
-
Elongation inhibition by DRB sensitivity-inducing factor is regulated by the A20 promoter via a novel negative element and NF-kappaB
-
Ainbinder,E., Amir-Zilberstein,L., Yamaguchi,Y., Handa,H. and Dikstein,R. (2004) Elongation inhibition by DRB sensitivity-inducing factor is regulated by the A20 promoter via a novel negative element and NF-kappaB. Mol. Cell Biol., 24, 2444-2454.
-
(2004)
Mol. Cell Biol
, vol.24
, pp. 2444-2454
-
-
Ainbinder, E.1
Amir-Zilberstein, L.2
Yamaguchi, Y.3
Handa, H.4
Dikstein, R.5
-
21
-
-
2942702012
-
Yin Yang 1 is a negative regulator of p53
-
Sui,G., Affar El,B., Shi,Y., Brignone,C., Wall,N.R., Yin,P., Donohoe,M., Luke,M.P., Calvo,D., Grossman,S.R. et al. (2004) Yin Yang 1 is a negative regulator of p53. Cell, 117, 859-872.
-
(2004)
Cell
, vol.117
, pp. 859-872
-
-
Sui, G.1
Affar El, B.2
Shi, Y.3
Brignone, C.4
Wall, N.R.5
Yin, P.6
Donohoe, M.7
Luke, M.P.8
Calvo, D.9
Grossman, S.R.10
-
22
-
-
38349163133
-
Interplay between E-box and NF-kappaB in regulation of A20 gene by DRB sensitivity-inducing factor (DSIF)
-
Amir-Zilberstein,L. and Dikstein,R. (2008) Interplay between E-box and NF-kappaB in regulation of A20 gene by DRB sensitivity-inducing factor (DSIF). J. Biol. Chem., 283, 1317-1323.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 1317-1323
-
-
Amir-Zilberstein, L.1
Dikstein, R.2
-
23
-
-
35548972057
-
Identification of a new cis-regulatory element of the terminal deoxynucleotidyl transferase gene in the 5′ region of the murine locus
-
Cherrier,M., D'Andon,M.F., Rougeon,F. and Doyen,N. (2008) Identification of a new cis-regulatory element of the terminal deoxynucleotidyl transferase gene in the 5′ region of the murine locus. Mol. Immunol., 45, 1009-1017.
-
(2008)
Mol. Immunol
, vol.45
, pp. 1009-1017
-
-
Cherrier, M.1
D'Andon, M.F.2
Rougeon, F.3
Doyen, N.4
-
24
-
-
7044249169
-
The role of TFIID, the initiator element and a novel 5′ TFIID binding site in the transcriptional control of the TATA-less human cytosolic phospholipase A2-alpha promoter
-
Cowan,M.J., Yao,X.L., Pawliczak,R., Huang,X., Logun,C., Madara,P., Alsaaty,S., Wu,T. and Shelhamer,J.H. (2004) The role of TFIID, the initiator element and a novel 5′ TFIID binding site in the transcriptional control of the TATA-less human cytosolic phospholipase A2-alpha promoter. Biochim. Biophys. Acta, 1680, 145-157.
-
(2004)
Biochim. Biophys. Acta
, vol.1680
, pp. 145-157
-
-
Cowan, M.J.1
Yao, X.L.2
Pawliczak, R.3
Huang, X.4
Logun, C.5
Madara, P.6
Alsaaty, S.7
Wu, T.8
Shelhamer, J.H.9
-
25
-
-
3042812467
-
A conserved initiator element on the mammalian poly(ADP-ribose) polymerase-1 promoters, in combination with flanking core elements, is necessary to obtain high transcriptional activity
-
Laniel,M.A., Poirier,G.G. and Guerin,S.L. (2004) A conserved initiator element on the mammalian poly(ADP-ribose) polymerase-1 promoters, in combination with flanking core elements, is necessary to obtain high transcriptional activity. Biochim. Biophys. Acta, 1679, 37-46.
-
(2004)
Biochim. Biophys. Acta
, vol.1679
, pp. 37-46
-
-
Laniel, M.A.1
Poirier, G.G.2
Guerin, S.L.3
-
26
-
-
13544270850
-
Spacing requirements for simultaneous recognition of the adenovirus major late promoter TATA AAAG box and initiator element
-
Ren,D., Nedialkov,Y.A., Li,F., Xu,D., Reimers,S., Finkelstein,A. and Burton,Z.F. (2005) Spacing requirements for simultaneous recognition of the adenovirus major late promoter TATA AAAG box and initiator element. Arch. Biochem. Biophys., 435, 347-362.
-
(2005)
Arch. Biochem. Biophys
, vol.435
, pp. 347-362
-
-
Ren, D.1
Nedialkov, Y.A.2
Li, F.3
Xu, D.4
Reimers, S.5
Finkelstein, A.6
Burton, Z.F.7
-
27
-
-
0037093454
-
Identification of an initiator-like element essential for the expression of the tissue inhibitor of metalloproteinases-4 (Timp-4) gene
-
Young,D.A., Phillips,B.W., Lundy,C., Nuttall,R.K., Hogan,A., Schultz,G.A., Leco,K.J., Clark,I.M. and Edwards,D.R. (2002) Identification of an initiator-like element essential for the expression of the tissue inhibitor of metalloproteinases-4 (Timp-4) gene. Biochem. J., 364, 89-99.
-
(2002)
Biochem. J
, vol.364
, pp. 89-99
-
-
Young, D.A.1
Phillips, B.W.2
Lundy, C.3
Nuttall, R.K.4
Hogan, A.5
Schultz, G.A.6
Leco, K.J.7
Clark, I.M.8
Edwards, D.R.9
-
28
-
-
0037430979
-
An initiator and its flanking elements function as a core promoter driving transcription of the Hepatopoietin gene
-
Zhao,Y., Tang,F., Cheng,J., Li,L., Xing,G., Zhu,Y., Zhang,L., Wei,H. and He,F. (2003) An initiator and its flanking elements function as a core promoter driving transcription of the Hepatopoietin gene. FEBS Lett. 540, 58-64.
-
(2003)
FEBS Lett
, vol.540
, pp. 58-64
-
-
Zhao, Y.1
Tang, F.2
Cheng, J.3
Li, L.4
Xing, G.5
Zhu, Y.6
Zhang, L.7
Wei, H.8
He, F.9
-
29
-
-
41549112389
-
Links between core promoter and basic gene features influence gene expression
-
Moshonov,S., Elfakess,R., Golan-Mashiach,M., Sinvani,H. and Dikstein,R. (2008) Links between core promoter and basic gene features influence gene expression. BMC Genomics, 9, 92.
-
(2008)
BMC Genomics
, vol.9
, pp. 92
-
-
Moshonov, S.1
Elfakess, R.2
Golan-Mashiach, M.3
Sinvani, H.4
Dikstein, R.5
-
30
-
-
0026072263
-
YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro
-
Seto,E., Shi,Y. and Shenk,T. (1991) YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro. Nature, 354, 241-245.
-
(1991)
Nature
, vol.354
, pp. 241-245
-
-
Seto, E.1
Shi, Y.2
Shenk, T.3
-
31
-
-
33745583768
-
A genetic signature of interspecies variations in gene expression
-
Tirosh,I., Weinberger,A., Carmi,M. and Barkai,N. (2006) A genetic signature of interspecies variations in gene expression. Nat. Genet. 38, 830-834.
-
(2006)
Nat. Genet
, vol.38
, pp. 830-834
-
-
Tirosh, I.1
Weinberger, A.2
Carmi, M.3
Barkai, N.4
-
32
-
-
34250785284
-
Genetic properties influencing the evolvability of gene expression
-
Landry,C.R., Lemos,B., Rifkin,S.A., Dickinson,W.J. and Hartl,D.L. (2007) Genetic properties influencing the evolvability of gene expression. Science, 317, 118-121.
-
(2007)
Science
, vol.317
, pp. 118-121
-
-
Landry, C.R.1
Lemos, B.2
Rifkin, S.A.3
Dickinson, W.J.4
Hartl, D.L.5
-
33
-
-
0024276524
-
Analysis of Sp1 in vivo reveals multiple transcriptional domains, including a novel glutamine-rich activation motif
-
Courey,A.J. and Tjian,R. (1988) Analysis of Sp1 in vivo reveals multiple transcriptional domains, including a novel glutamine-rich activation motif. Cell, 55, 887-898.
-
(1988)
Cell
, vol.55
, pp. 887-898
-
-
Courey, A.J.1
Tjian, R.2
-
34
-
-
0024290265
-
Distinct regions of Sp1 modulate DNA binding and transcriptional activation
-
Kadonaga,J.T., Courey,A.J., Ladika,J. and Tjian,R. (1988) Distinct regions of Sp1 modulate DNA binding and transcriptional activation. Science, 242, 1566-1570.
-
(1988)
Science
, vol.242
, pp. 1566-1570
-
-
Kadonaga, J.T.1
Courey, A.J.2
Ladika, J.3
Tjian, R.4
-
35
-
-
0028883811
-
Core promoter specificities of the Sp1 and VP16 transcriptional activation domains
-
Emami,K.H., Navarre,W.W. and Smale,S.T. (1995) Core promoter specificities of the Sp1 and VP16 transcriptional activation domains. Mol. Cell Biol., 15, 5906-5916.
-
(1995)
Mol. Cell Biol
, vol.15
, pp. 5906-5916
-
-
Emami, K.H.1
Navarre, W.W.2
Smale, S.T.3
-
36
-
-
0030986209
-
Accurate positioning of RNA polymerase II on a natural TATA-less promoter is independent of TATA-binding-protein-associated factors and initiator-binding proteins
-
Weis,L. and Reinberg,D. (1997) Accurate positioning of RNA polymerase II on a natural TATA-less promoter is independent of TATA-binding-protein-associated factors and initiator-binding proteins. Mol. Cell Biol., 17, 2973-2984.
-
(1997)
Mol. Cell Biol
, vol.17
, pp. 2973-2984
-
-
Weis, L.1
Reinberg, D.2
|