-
1
-
-
34247523662
-
Reverse gyrase: An insight into the role of DNA-topoisomerases
-
Nadal,M. (2007) Reverse gyrase: An insight into the role of DNA-topoisomerases. Biochimie, 89, 447-455.
-
(2007)
Biochimie
, vol.89
, pp. 447-455
-
-
Nadal, M.1
-
2
-
-
59749083930
-
Reverse gyrase and genome stability in hyperthermophilic organisms
-
Perugino,G., Valenti,A., D'amaro,A., Rossi,M. and Ciaramella,M. (2009) Reverse gyrase and genome stability in hyperthermophilic organisms. Biochem. Soc. Trans., 37, 69-73.
-
(2009)
Biochem. Soc. Trans
, vol.37
, pp. 69-73
-
-
Perugino, G.1
Valenti, A.2
D'amaro, A.3
Rossi, M.4
Ciaramella, M.5
-
3
-
-
0036574857
-
A hot story from comparative genomics: Reverse gyrase is the only hyperthermophile-specific protein
-
Forterre,P. (2002) A hot story from comparative genomics: Reverse gyrase is the only hyperthermophile-specific protein. Trends Genet., 18, 236-237.
-
(2002)
Trends Genet
, vol.18
, pp. 236-237
-
-
Forterre, P.1
-
4
-
-
34250896106
-
Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggest a complex hystory of vertical inheritance and lateral gene transfers
-
Brochier-Armanet,C. and Forterre,P. (2006) Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggest a complex hystory of vertical inheritance and lateral gene transfers. Archaea 2, i-xi.
-
(2006)
Archaea
, vol.2
-
-
Brochier-Armanet, C.1
Forterre, P.2
-
5
-
-
3042814762
-
Reverse gyrase is not a prerequisite for hyperthermophilic life
-
Atomi,H., Matsumi,R. and Imanaka,T. (2004) Reverse gyrase is not a prerequisite for hyperthermophilic life. J. Bacteriol., 186, 4829-4833.
-
(2004)
J. Bacteriol
, vol.186
, pp. 4829-4833
-
-
Atomi, H.1
Matsumi, R.2
Imanaka, T.3
-
6
-
-
61449257456
-
-
Campbell,B.J., Smith,J.L., Hanson,T.E., Klotz,M.G., Stein,L.Y., Lee,C.K., Wu,D., Robinson,J.M., Khouri,H.M., Eisen,J.A. et al. (2009) Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet., e1000362.
-
Campbell,B.J., Smith,J.L., Hanson,T.E., Klotz,M.G., Stein,L.Y., Lee,C.K., Wu,D., Robinson,J.M., Khouri,H.M., Eisen,J.A. et al. (2009) Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet., e1000362.
-
-
-
-
7
-
-
49249126751
-
Dissection of reverse gyrase activities: Insight into the evolution of a thermostable molecular machine
-
Valenti,A., Perugino,G., D'Amaro,A., Cacace,A., Napoli,A., Rossi,M. and Ciaramella,M. (2008) Dissection of reverse gyrase activities: Insight into the evolution of a thermostable molecular machine. Nucleic Acids Res., 36, 4587-4597.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4587-4597
-
-
Valenti, A.1
Perugino, G.2
D'Amaro, A.3
Cacace, A.4
Napoli, A.5
Rossi, M.6
Ciaramella, M.7
-
8
-
-
4043143584
-
Reverse gyrase recruitment to DNA after UV light irradiation in Sulfolobus solfataricus
-
Napoli,A., Valenti,A., Salerno,V., Nadal,M., Garnier,F., Rossi,M. and Ciaramella,M. (2004) Reverse gyrase recruitment to DNA after UV light irradiation in Sulfolobus solfataricus. J. Biol. Chem., 279, 33192-33198.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 33192-33198
-
-
Napoli, A.1
Valenti, A.2
Salerno, V.3
Nadal, M.4
Garnier, F.5
Rossi, M.6
Ciaramella, M.7
-
9
-
-
13744263542
-
Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus
-
Napoli,A., Valenti,A., Salerno,V., Nadal,M., Garnier,F., Rossi,M. and Ciaramella,M. (2005) Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus. Nucleic Acids Res., 33, 564-576.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 564-576
-
-
Napoli, A.1
Valenti, A.2
Salerno, V.3
Nadal, M.4
Garnier, F.5
Rossi, M.6
Ciaramella, M.7
-
10
-
-
33645925663
-
Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus
-
Valenti,A., Napoli,A., Ferrara,M.C., Nadal,M., Rossi,M. and Ciaramella,M. (2006) Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus. Nucleic Acids Res., 34, 2098-2108.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2098-2108
-
-
Valenti, A.1
Napoli, A.2
Ferrara, M.C.3
Nadal, M.4
Rossi, M.5
Ciaramella, M.6
-
11
-
-
33750344433
-
Environmental stress and lesion-bypass DNA polymerases
-
Nohmi,T. (2006) Environmental stress and lesion-bypass DNA polymerases. Annu. Rev Microbiol., 60, 231-253.
-
(2006)
Annu. Rev Microbiol
, vol.60
, pp. 231-253
-
-
Nohmi, T.1
-
12
-
-
43849111224
-
Lesion processing: High-fidelity versus lesion-bypass DNA polymerases
-
Broyde,S., Wang,L., Rechkoblit,O., Geacintov,N.E. and Patel,D.J. (2008) Lesion processing: High-fidelity versus lesion-bypass DNA polymerases. Trends Biochem. Sci., 33, 209-219.
-
(2008)
Trends Biochem. Sci
, vol.33
, pp. 209-219
-
-
Broyde, S.1
Wang, L.2
Rechkoblit, O.3
Geacintov, N.E.4
Patel, D.J.5
-
13
-
-
34249941966
-
Translesion synthesis: Y-family polymerases and the polymerase switch
-
Lehmann,A.R., Niimi,A., Ogi,T., Brown,S., Sabbioneda,S., Wing,JF., Kannouche,PL. and Green,C.M. (2007) Translesion synthesis: Y-family polymerases and the polymerase switch. DNA Repair, 6, 891-899.
-
(2007)
DNA Repair
, vol.6
, pp. 891-899
-
-
Lehmann, A.R.1
Niimi, A.2
Ogi, T.3
Brown, S.4
Sabbioneda, S.5
Wing, J.F.6
Kannouche, P.L.7
Green, C.M.8
-
14
-
-
19444383801
-
Trading places: How do DNA polymerases switch during translesion DNA synthesis?
-
Friedberg,E.C., Lehmann,A.R. and Fuchs,R.P.P. (2005) Trading places: How do DNA polymerases switch during translesion DNA synthesis? Mol. Cell 18, 499-505.
-
(2005)
Mol. Cell
, vol.18
, pp. 499-505
-
-
Friedberg, E.C.1
Lehmann, A.R.2
Fuchs, R.P.P.3
-
15
-
-
33846695786
-
Y-family DNA polymerases in Escherichia coli
-
Jarosz,D.F., Beuning,P.J., Cohen,S.E. and Walker,G.C. (2007) Y-family DNA polymerases in Escherichia coli. Trends Microbiol., 15, 70-77.
-
(2007)
Trends Microbiol
, vol.15
, pp. 70-77
-
-
Jarosz, D.F.1
Beuning, P.J.2
Cohen, S.E.3
Walker, G.C.4
-
16
-
-
0035812849
-
Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication
-
Ling,H., Boudsocq,F., Woodgate,R. and Yang,W. (2001) Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication. Cell, 107, 91-102.
-
(2001)
Cell
, vol.107
, pp. 91-102
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
17
-
-
0034762679
-
Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus
-
Silvian,L.F., Toth,E.A., Pham,P., Goodman,M.F. and Ellenberger,T. (2001) Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus. Nat. Struct. Biol., 11, 984-989.
-
(2001)
Nat. Struct. Biol
, vol.11
, pp. 984-989
-
-
Silvian, L.F.1
Toth, E.A.2
Pham, P.3
Goodman, M.F.4
Ellenberger, T.5
-
18
-
-
0034857266
-
Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain
-
Zhou,B.L., Pata,J.D. and Steitz,T.A. (2001) Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain. Mol. Cell, 8, 427-437.
-
(2001)
Mol. Cell
, vol.8
, pp. 427-437
-
-
Zhou, B.L.1
Pata, J.D.2
Steitz, T.A.3
-
19
-
-
0035890599
-
Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): An archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta
-
Boudsocq,F., Iwai,S., Hanaoka,F. and Woodgate,R. (2001) Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): An archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta. Nucleic Acids Res., 29, 4607-4616.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4607-4616
-
-
Boudsocq, F.1
Iwai, S.2
Hanaoka, F.3
Woodgate, R.4
-
20
-
-
0037368828
-
Erroneous incorporation of oxidized DNA precursors by Y-family DNA polymerases
-
Shimizu,M., Gruz,P., Kamiya,H., Kim,S.R., Pisani,F.M., Masutani,C., Kanke,Y., Harashima,H., Hanaoka,F. and Nohmi,T. (2003) Erroneous incorporation of oxidized DNA precursors by Y-family DNA polymerases. EMBO Rep., 4, 269-273.
-
(2003)
EMBO Rep
, vol.4
, pp. 269-273
-
-
Shimizu, M.1
Gruz, P.2
Kamiya, H.3
Kim, S.R.4
Pisani, F.M.5
Masutani, C.6
Kanke, Y.7
Harashima, H.8
Hanaoka, F.9
Nohmi, T.10
-
21
-
-
0242317687
-
Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus
-
Grúz,P., Shimizu,M., Pisani,F.M., De Felice,M., Kanke,Y. and Nohmi,T. (2003) Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus. Nucleic Acids Res., 31, 4024-4030.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4024-4030
-
-
Grúz, P.1
Shimizu, M.2
Pisani, F.M.3
De Felice, M.4
Kanke, Y.5
Nohmi, T.6
-
22
-
-
63649090634
-
Versatility of Y-family Sulfolobus solfataricus DNA Polymerase Dpo4 in Translesion Synthesis Past Bulky N2-Alkylguanine Adducts
-
Zhang,H., Eoff,R.L., Kozekov,I.D., Rizzo,C.J., Egli,M. and Guengerich,F.P. (2009). Versatility of Y-family Sulfolobus solfataricus DNA Polymerase Dpo4 in Translesion Synthesis Past Bulky N2-Alkylguanine Adducts. J. Biol. Chem., 6, 3563-3576.
-
(2009)
J. Biol. Chem
, vol.6
, pp. 3563-3576
-
-
Zhang, H.1
Eoff, R.L.2
Kozekov, I.D.3
Rizzo, C.J.4
Egli, M.5
Guengerich, F.P.6
-
23
-
-
58449104506
-
Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA
-
Xing,G., Kirouac,K., Shin,Y.J., Bell,S.D. and Ling,H. (2009) Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA. Mol. Microbiol., 71, 678-691.
-
(2009)
Mol. Microbiol
, vol.71
, pp. 678-691
-
-
Xing, G.1
Kirouac, K.2
Shin, Y.J.3
Bell, S.D.4
Ling, H.5
-
24
-
-
0035861667
-
Synthetic activity of Sso DNA polymerase Y1, an archaeal DinB-like DNA polymerase, is stimulated by processivity factors proliferating cell nuclear antigen and replication factor
-
Grúz,P., Pisani,F.M., Shimizu,M., Yamada,M., Hayashi,I., Morikawa,K. and Nohmi,T. (2001) Synthetic activity of Sso DNA polymerase Y1, an archaeal DinB-like DNA polymerase, is stimulated by processivity factors proliferating cell nuclear antigen and replication factor C. J. Biol. Chem., 276, 47394-473401.
-
(2001)
C. J. Biol. Chem
, vol.276
, pp. 47394-473401
-
-
Grúz, P.1
Pisani, F.M.2
Shimizu, M.3
Yamada, M.4
Hayashi, I.5
Morikawa, K.6
Nohmi, T.7
-
25
-
-
0035865799
-
Identification and properties of the crenarchaeal single-stranded DNA binding protein from Sulfolobus solfataricus
-
Wadsworth,R.I. and White,M.F. (2001) Identification and properties of the crenarchaeal single-stranded DNA binding protein from Sulfolobus solfataricus. Nucleic Acids Res., 29, 914-920.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 914-920
-
-
Wadsworth, R.I.1
White, M.F.2
-
26
-
-
0026720484
-
A DNA polymerase from the archaeon Sulfolobus solfataricus shows sequence similarity to family B DNA polymerases
-
Pisani,F.M., De Martino,C. and Rossi,M. (1992) A DNA polymerase from the archaeon Sulfolobus solfataricus shows sequence similarity to family B DNA polymerases. Nucleic Acids Res., 20, 2711-2716.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2711-2716
-
-
Pisani, F.M.1
De Martino, C.2
Rossi, M.3
-
27
-
-
33847255445
-
Biochemical evidence of a physical interaction between Sulfolobus solfataricus B-family and Y-family DNA polymerases
-
De Felice,M., Medagli,B., Esposito,L., De Falco,M., Pucci,B., Rossi,M., Grùz,P., Nohmi,T. and Pisani,F.M. (2007) Biochemical evidence of a physical interaction between Sulfolobus solfataricus B-family and Y-family DNA polymerases. Extremophiles, 11, 277-282.
-
(2007)
Extremophiles
, vol.11
, pp. 277-282
-
-
De Felice, M.1
Medagli, B.2
Esposito, L.3
De Falco, M.4
Pucci, B.5
Rossi, M.6
Grùz, P.7
Nohmi, T.8
Pisani, F.M.9
-
28
-
-
54249147462
-
The prefoldin of the crenarchaeon Sulfolobus solfataricus
-
D'Amaro,A., Valenti,A, Napoli,A., Rossi,M. and Ciaramella (2008) The prefoldin of the crenarchaeon Sulfolobus solfataricus. Protein Peptide Lett., 15, 1055-1062.
-
(2008)
Protein Peptide Lett
, vol.15
, pp. 1055-1062
-
-
D'Amaro, A.1
Valenti, A.2
Napoli, A.3
Rossi, M.4
Ciaramella5
-
29
-
-
2342516683
-
Physical and functional interaction of the archaeal single-stranded DNA-binding protein SSB with RNA polymerase
-
Richard,D.J., Bell,S.D. and White,M.F. (2004) Physical and functional interaction of the archaeal single-stranded DNA-binding protein SSB with RNA polymerase. Nucleic Acids Res., 32, 1065-10674.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1065-10674
-
-
Richard, D.J.1
Bell, S.D.2
White, M.F.3
-
30
-
-
2342487313
-
Analysis of the unwinding activity of the dimeric RECQ1 helicase in the presence of human replication protein A
-
Cui,S., Arosio,D., Doherty,K.M., Brosh,R.M. Jr., Falaschi,A. and Vindigni,A (2004) Analysis of the unwinding activity of the dimeric RECQ1 helicase in the presence of human replication protein A. Nucleic Acids Res., 32, 2158-2170.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2158-2170
-
-
Cui, S.1
Arosio, D.2
Doherty, K.M.3
Brosh Jr., R.M.4
Falaschi, A.5
Vindigni, A.6
-
31
-
-
55949089364
-
ranscriptional analysis of the two reverse gyrase encoding genes of Sulfolobus solfataricus P2 in relation to the growth phases and temperature conditions
-
Garnier,F. and Nadal,M.T. (2008) ranscriptional analysis of the two reverse gyrase encoding genes of Sulfolobus solfataricus P2 in relation to the growth phases and temperature conditions. Extremophiles, 12, 799-809.
-
(2008)
Extremophiles
, vol.12
, pp. 799-809
-
-
Garnier, F.1
Nadal, M.T.2
-
32
-
-
26244442261
-
DNA damage detection by an archaeal single-stranded DNA-binding protein
-
Cubeddu,L. and White,M.F. (2005) DNA damage detection by an archaeal single-stranded DNA-binding protein. J. Mol. Biol., 353, 507-516.
-
(2005)
J. Mol. Biol
, vol.353
, pp. 507-516
-
-
Cubeddu, L.1
White, M.F.2
-
33
-
-
0037119393
-
Studies of a positive supercoiling machine. Nucleotide hydrolysis and a multifunctional "latch" in the mechanism of reverse gyrase
-
Rodriguez,A.C. (2002) Studies of a positive supercoiling machine. Nucleotide hydrolysis and a multifunctional "latch" in the mechanism of reverse gyrase. J. Biol. Chem., 277, 29865-29873.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 29865-29873
-
-
Rodriguez, A.C.1
-
34
-
-
24644443795
-
Distinct mechanisms of cis-syn thymine dimer bypass by Dpo4 and DNA polymerase eta
-
Johnson,R.E., Prakash,L. and Prakash,S. (2005) Distinct mechanisms of cis-syn thymine dimer bypass by Dpo4 and DNA polymerase eta. Proc. Natl Acad. Sci. USA, 102, 12359-12364.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 12359-12364
-
-
Johnson, R.E.1
Prakash, L.2
Prakash, S.3
-
35
-
-
0035902560
-
Roles of DNA polymerases V and II in SOS-induced error-prone and error-free repair in Escherichia coli
-
Pham,P., Rangarajan,S., Woodgate,R. and Goodman,M.F. (2001) Roles of DNA polymerases V and II in SOS-induced error-prone and error-free repair in Escherichia coli. Proc. Natl Acad. Sci. USA, Jul 15, 8350-8354.
-
(2001)
Proc. Natl Acad. Sci. USA, Jul 15
, pp. 8350-8354
-
-
Pham, P.1
Rangarajan, S.2
Woodgate, R.3
Goodman, M.F.4
-
36
-
-
58449112244
-
Spontaneous mutagenesis is elevated in protease-defective cells
-
Al Mamun,A.A. and Humayun,M.Z. (2009) Spontaneous mutagenesis is elevated in protease-defective cells. Mol. Microbiol., 71, 629-639.
-
(2009)
Mol. Microbiol
, vol.71
, pp. 629-639
-
-
Al Mamun, A.A.1
Humayun, M.Z.2
-
37
-
-
0029790056
-
Regulation of SOS mutagenesis by proteolysis
-
Frank,EG., Ennis,DG., Gonzalez,M., Levine,AS. and Woodgate,R. (1996) Regulation of SOS mutagenesis by proteolysis. Proc. Natl Acad. Sci. USA, Sep 19, 10291-10296.
-
(1996)
Proc. Natl Acad. Sci. USA, Sep 19
, pp. 10291-10296
-
-
Frank, E.G.1
Ennis, D.G.2
Gonzalez, M.3
Levine, A.S.4
Woodgate, R.5
-
38
-
-
0032535038
-
Lon-mediated proteolysis of the Escherichia coli UmuD mutagenesis protein: In vitro degradation and identification of residues required for proteolysis
-
Dec 24
-
Gonzalez,M., Frank,E.G., Levine,A.S. and Woodgate,R. (1998) Lon-mediated proteolysis of the Escherichia coli UmuD mutagenesis protein: In vitro degradation and identification of residues required for proteolysis. Genes Dev., Dec 24, 3889-3899.
-
(1998)
Genes Dev
, pp. 3889-3899
-
-
Gonzalez, M.1
Frank, E.G.2
Levine, A.S.3
Woodgate, R.4
-
39
-
-
0034596991
-
Subunit-specific degradation of the UmuD/D' heterodimer by the ClpXP protease: The role of trans recognition in UmuD' stability
-
Gonzalez,M., Rasulova,F., Maurizi,M.R. and Woodgate,R. (2000) Subunit-specific degradation of the UmuD/D' heterodimer by the ClpXP protease: The role of trans recognition in UmuD' stability. EMBO J. 19, 5251-5258.
-
(2000)
EMBO J
, vol.19
, pp. 5251-5258
-
-
Gonzalez, M.1
Rasulova, F.2
Maurizi, M.R.3
Woodgate, R.4
-
40
-
-
57749101303
-
Regulated proteolysis of DNA polymerase eta during the DNA-damage response in C. elegans
-
Kim,S.H. and Michael,W.M. (2008) Regulated proteolysis of DNA polymerase eta during the DNA-damage response in C. elegans. Mol. Cell, 32 757-766.
-
(2008)
Mol. Cell
, vol.32
, pp. 757-766
-
-
Kim, S.H.1
Michael, W.M.2
|