-
1
-
-
28844492648
-
Protein surface analysis for function annotation in high-throughput structural genomics pipeline
-
Binkowski,T.A., Joachimiak,A. and Liang,J. (2005) Protein surface analysis for function annotation in high-throughput structural genomics pipeline. Protein Sci., 14, 2972-2981.
-
(2005)
Protein Sci
, vol.14
, pp. 2972-2981
-
-
Binkowski, T.A.1
Joachimiak, A.2
Liang, J.3
-
2
-
-
51349090017
-
-
Sael,L., Li,B., La,D., Fang,Y., Ramani,K., Rustamov,R. and Kihara,D. (2008) Fast protein tertiary structure retrieval based on global surface shape similarity. Proteins, 72, 1259-1273.
-
Sael,L., Li,B., La,D., Fang,Y., Ramani,K., Rustamov,R. and Kihara,D. (2008) Fast protein tertiary structure retrieval based on global surface shape similarity. Proteins, 72, 1259-1273.
-
-
-
-
3
-
-
18744394070
-
Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites
-
Laurie,A.T. and Jackson,R.M. (2005) Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites. Bioinformatics 21, 1908-1916.
-
(2005)
Bioinformatics
, vol.21
, pp. 1908-1916
-
-
Laurie, A.T.1
Jackson, R.M.2
-
4
-
-
0041842509
-
Identification of protein biochemical functions by similarity search using the molecular surface database eF-site
-
Kinoshita,K. and Nakamura,H. (2003) Identification of protein biochemical functions by similarity search using the molecular surface database eF-site. Protein Sci., 12, 1589-1595.
-
(2003)
Protein Sci
, vol.12
, pp. 1589-1595
-
-
Kinoshita, K.1
Nakamura, H.2
-
5
-
-
0346494936
-
SURFACE: A database of protein surface regions for functional annotation
-
Ferre,F., Ausiello,G., Zanzoni,A. and Helmer-Citterich,M. (2004) SURFACE: A database of protein surface regions for functional annotation. Nucleic Acids Res., 32, D240-D244.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Ferre, F.1
Ausiello, G.2
Zanzoni, A.3
Helmer-Citterich, M.4
-
6
-
-
67849109034
-
Identification of protein functional surfaces by the concept of a split pocket
-
Epub ahead of print
-
Tseng,Y.Y. and Li,W.H. (2009) Identification of protein functional surfaces by the concept of a split pocket. Proteins, [Epub ahead of print].
-
(2009)
Proteins
-
-
Tseng, Y.Y.1
Li, W.H.2
-
7
-
-
85053919378
-
Measuring proteins and voids in proteins
-
Edelsbrunner,H., Facello,M., Fu,P. and Liang,J. (1995) Measuring proteins and voids in proteins. Proc. Ann. Hawaii Int. Conf. Syst. Sci., 5, 256-264.
-
(1995)
Proc. Ann. Hawaii Int. Conf. Syst. Sci
, vol.5
, pp. 256-264
-
-
Edelsbrunner, H.1
Facello, M.2
Fu, P.3
Liang, J.4
-
8
-
-
0002052671
-
On the definition and the construction of pockets in macromolecules
-
Edelsbrunner,H., Facello,M. and Liang,J. (1998) On the definition and the construction of pockets in macromolecules. Discrete Appl. Math. 88, 83-102.
-
(1998)
Discrete Appl. Math
, vol.88
, pp. 83-102
-
-
Edelsbrunner, H.1
Facello, M.2
Liang, J.3
-
10
-
-
67849123365
-
De.ning and characterizing protein surface using alpha shapes
-
Epub ahead of print
-
Albou,L.P., Schwarz,B., Poch,O., Wurtz,J.M. and Moras,D. (2008) De.ning and characterizing protein surface using alpha shapes. Proteins, [Epub ahead of print].
-
(2008)
Proteins
-
-
Albou, L.P.1
Schwarz, B.2
Poch, O.3
Wurtz, J.M.4
Moras, D.5
-
11
-
-
0042890523
-
Inferring functional relationships of proteins from local sequence and spatial surface patterns
-
Binkowski,T.A., Adamian,L. and Liang,J. (2003) Inferring functional relationships of proteins from local sequence and spatial surface patterns. J. Mol. Biol., 332, 505-526.
-
(2003)
J. Mol. Biol
, vol.332
, pp. 505-526
-
-
Binkowski, T.A.1
Adamian, L.2
Liang, J.3
-
12
-
-
61649106689
-
Predicting protein function and binding profile via matching of local evolutionary and geometric surface patterns
-
Tseng,Y.Y., Dundas,J. and Liang,J. (2009) Predicting protein function and binding profile via matching of local evolutionary and geometric surface patterns. J. Mol. Biol., 387, 451-464.
-
(2009)
J. Mol. Biol
, vol.387
, pp. 451-464
-
-
Tseng, Y.Y.1
Dundas, J.2
Liang, J.3
-
13
-
-
30744465573
-
Estimation of amino acid residue substitution rates at local spatial regions and application in protein function inference: A Bayesian Monte Carlo approach
-
Tseng,Y.Y. and Liang,J. (2006) Estimation of amino acid residue substitution rates at local spatial regions and application in protein function inference: A Bayesian Monte Carlo approach. Mol. Biol. Evol. 23, 421-436.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 421-436
-
-
Tseng, Y.Y.1
Liang, J.2
-
14
-
-
0032190305
-
Analytical shape computation of macromolecules: I. molecular area and volume through alpha shape
-
Liang,J., Edelsbrunner,H., Fu,P., Sudhakar,P.V. and Subramaniam,S. (1998) Analytical shape computation of macromolecules: I. molecular area and volume through alpha shape. Proteins, 33, 1-17.
-
(1998)
Proteins
, vol.33
, pp. 1-17
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
15
-
-
0031687653
-
Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design
-
Liang,J., Edelsbrunner,H. and Woodward,C. (1998) Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design. Protein Sci., 7, 1884-1897.
-
(1998)
Protein Sci
, vol.7
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
16
-
-
33747818007
-
CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
-
Dundas,J., Ouyang,Z., Tseng,J., Binkowski,A., Turpaz,Y. and Liang,J. (2006) CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res., 34, W116-W118.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
17
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander,C. and Schneider,R. (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 9, 56-68.
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
18
-
-
0033001789
-
Crystal structures of c-Src reveal features of its autoinhibitory mechanism
-
Xu,W., Doshi,A., Lei,M., Eck,M.J. and Harrison,S.C. (1999) Crystal structures of c-Src reveal features of its autoinhibitory mechanism. Mol. Cell, 3, 629-638.
-
(1999)
Mol. Cell
, vol.3
, pp. 629-638
-
-
Xu, W.1
Doshi, A.2
Lei, M.3
Eck, M.J.4
Harrison, S.C.5
-
19
-
-
0013133162
-
A new test set for validating predictions of protein-ligand interaction
-
Nissink,J.W., Murray,C., Hartshorn,M., Verdonk,M.L., Cole,J.C. and Taylor,R. (2002) A new test set for validating predictions of protein-ligand interaction. Proteins, 49, 457-471.
-
(2002)
Proteins
, vol.49
, pp. 457-471
-
-
Nissink, J.W.1
Murray, C.2
Hartshorn, M.3
Verdonk, M.L.4
Cole, J.C.5
Taylor, R.6
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