메뉴 건너뛰기




Volumn 41, Issue 2, 2009, Pages 180-193

Informatic resources for identifying and annotating structural RNA motifs

Author keywords

Bioinformatics; Informatics; Post transcrption; Ribonomics; RIP Chip; RNA; RNA binding proteins; Structure

Indexed keywords

INFORMATICS; POST-TRANSCRPTION; RIBONOMICS; RIP-CHIP; RNA-BINDING PROTEINS; STRUCTURE;

EID: 67749147275     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12033-008-9114-z     Document Type: Review
Times cited : (4)

References (75)
  • 1
    • 23144463910 scopus 로고    scopus 로고
    • RibEx: A web server for locating riboswitches and other conserved bacterial regulatory elements
    • C Abreu-Goodger E Merino 2005 RibEx: A web server for locating riboswitches and other conserved bacterial regulatory elements Nucleic Acids Research 33 Web Server issue W690 W692
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB SERVER ISSUE
    • Abreu-Goodger, C.1    Merino, E.2
  • 2
    • 4444378880 scopus 로고    scopus 로고
    • Conserved regulatory motifs in bacteria: Riboswitches and beyond
    • DOI 10.1016/j.tig.2004.08.003, PII S0168952504002227
    • C Abreu-Goodger 2004 Conserved regulatory motifs in bacteria: Riboswitches and beyond Trends in Genetics: TIG 20 10 475 479 10.1016/j.tig.2004.08.003 (Pubitemid 39201066)
    • (2004) Trends in Genetics , vol.20 , Issue.10 , pp. 475-479
    • Abreu-Goodger, C.1    Ontiveros-Palacios, N.2    Ciria, R.3    Merino, E.4
  • 3
    • 33744945759 scopus 로고    scopus 로고
    • Identification of consensus RNA secondary structures using suffix arrays
    • DOI 10.1186/1471-2105-7-244
    • M Anwar T Nguyen M Turcotte 2006 Identification of consensus RNA secondary structures using suffix arrays BMC Bioinformatics 7 244 10.1186/1471-2105-7-244 (Pubitemid 43842153)
    • (2006) BMC Bioinformatics , vol.7 , pp. 244
    • Anwar, M.1    Nguyen, T.2    Turcotte, M.3
  • 5
    • 34548348538 scopus 로고    scopus 로고
    • Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
    • DOI 10.1186/1471-2105-8-271
    • M Bauer GW Klau K Reinert 2007 Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization BMC Bioinformatics 8 271 10.1186/1471-2105-8-271 (Pubitemid 47335143)
    • (2007) BMC Bioinformatics , vol.8 , pp. 271
    • Bauer, M.1    Klau, G.W.2    Reinert, K.3
  • 6
    • 0026742978 scopus 로고
    • The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids
    • HM Berman 1992 The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids Biophysical Journal 63 3 751 759
    • (1992) Biophysical Journal , vol.63 , Issue.3 , pp. 751-759
    • Berman, H.M.1
  • 7
    • 33344469705 scopus 로고    scopus 로고
    • RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers
    • DOI 10.1261/rna.2164906
    • E Bindewald BA Shapiro 2006 RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers RNA (New York, N.Y.) 12 3 342 352 10.1261/rna.2164906 (Pubitemid 43290863)
    • (2006) RNA , vol.12 , Issue.3 , pp. 342-352
    • Bindewald, E.1    Shapiro, B.A.2
  • 8
    • 38549083634 scopus 로고    scopus 로고
    • RNAJunction: A database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
    • DOI 10.1093/nar/gkm842
    • E Bindewald 2008 RNAJunction: A database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign Nucleic Acids Research 36 Database issue D392 D397 10.1093/nar/gkm842 (Pubitemid 351149755)
    • (2008) Nucleic Acids Research , vol.36 , Issue.SUPPL. 1
    • Bindewald, E.1    Hayes, R.2    Yingling, Y.G.3    Kasprzak, W.4    Shapiro, B.A.5
  • 9
    • 33747840719 scopus 로고    scopus 로고
    • INFO-RNA - A fast approach to inverse RNA folding
    • DOI 10.1093/bioinformatics/btl194
    • A Busch R Backofen 2006 INFO-RNA-A fast approach to inverse RNA folding Bioinformatics (Oxford, England) 22 15 1823 1831 10.1093/bioinformatics/btl194 (Pubitemid 44283026)
    • (2006) Bioinformatics , vol.22 , Issue.15 , pp. 1823-1831
    • Busch, A.1    Backofen, R.2
  • 10
    • 33747857387 scopus 로고    scopus 로고
    • RNAMST: Efficient and flexible approach for identifying RNA structural homologs
    • T Chang 2006 RNAMST: Efficient and flexible approach for identifying RNA structural homologs Nucleic Acids Research 34 Web Server issue W423 W428
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB SERVER ISSUE
    • Chang, T.1
  • 12
    • 33745612985 scopus 로고    scopus 로고
    • StrAl: Progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
    • DOI 10.1093/bioinformatics/btl142
    • D Dalli 2006 STRAL: Progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time Bioinformatics (Oxford, England) 22 13 1593 1599 10.1093/bioinformatics/btl142 (Pubitemid 43985292)
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1593-1599
    • Dalli, D.1    Wilm, A.2    Mainz, I.3    Steger, G.4
  • 13
    • 0141515775 scopus 로고    scopus 로고
    • DDBRNA: Detection of conserved secondary structures in multiple alignments
    • DOI 10.1093/bioinformatics/btg229
    • D di Bernardo T Down T Hubbard 2003 ddbRNA: Detection of conserved secondary structures in multiple alignments Bioinformatics (Oxford, England) 19 13 1606 1611 10.1093/bioinformatics/btg229 (Pubitemid 37121147)
    • (2003) Bioinformatics , vol.19 , Issue.13 , pp. 1606-1611
    • Di Bernardo, D.1    Down, T.2    Hubbard, T.3
  • 14
    • 46249114849 scopus 로고    scopus 로고
    • A max-margin model for efficient simultaneous alignment and folding of RNA sequences
    • DOI 10.1093/bioinformatics/btn177
    • CB Do C Foo S Batzoglou 2008 A max-margin model for efficient simultaneous alignment and folding of RNA sequences Bioinformatics (Oxford, England) 24 13 i68 i76 10.1093/bioinformatics/btn177 (Pubitemid 351911659)
    • (2008) Bioinformatics , vol.24 , Issue.13
    • Do, C.B.1    Foo, C.-S.2    Batzoglou, S.3
  • 15
    • 42949162551 scopus 로고    scopus 로고
    • Bioinformatic tools for studying post-transcriptional gene regulation: The UAlbany TUTR collection and other informatic resources
    • 10.1007/978-1-59745-033-1-3
    • F Doyle 2008 Bioinformatic tools for studying post-transcriptional gene regulation: The UAlbany TUTR collection and other informatic resources Methods in Molecular Biology (Clifton, N.J.) 419 39 52 10.1007/978-1-59745-033-1-3
    • (2008) Methods in Molecular Biology (Clifton, N.J.) , vol.419 , pp. 39-52
    • Doyle, F.1
  • 16
    • 0031438685 scopus 로고    scopus 로고
    • Searching for patterns in genomic data
    • DOI 10.1016/S0168-9525(97)01347-4
    • M Dsouza N Larsen R Overbeek 1997 Searching for patterns in genomic data Trends in Genetics: TIG 13 12 497 498 10.1016/S0168-9525(97)01347-4 (Pubitemid 28004924)
    • (1997) Trends in Genetics , vol.13 , Issue.12 , pp. 497-498
    • Dsouza, M.1    Larsen, N.2    Overbeek, R.3
  • 18
    • 13344262673 scopus 로고    scopus 로고
    • A comprehensive comparison of comparative RNA structure prediction approaches
    • DOI 10.1186/1471-2105-5-140
    • P Gardner R Giegerich 2004 A comprehensive comparison of comparative RNA structure prediction approaches BMC Bioinformatics 5 1 140 10.1186/1471-2105-5- 140 (Pubitemid 40198135)
    • (2004) BMC Bioinformatics , vol.5 , pp. 140
    • Gardner, P.P.1    Giegerich, R.2
  • 19
    • 0035834489 scopus 로고    scopus 로고
    • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
    • DOI 10.1006/jmbi.2001.5102
    • D Gautheret A Lambert 2001 Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles Journal of Molecular Biology 313 5 1003 1011 10.1006/jmbi.2001.5102 (Pubitemid 33081896)
    • (2001) Journal of Molecular Biology , vol.313 , Issue.5 , pp. 1003-1011
    • Gautheret, D.1    Lambert, A.2
  • 20
    • 13444252847 scopus 로고    scopus 로고
    • Rfam: Annotating non-coding RNAs in complete genomes
    • S Griffiths-Jones 2005 Rfam: Annotating non-coding RNAs in complete genomes Nucleic Acids Research 33 suppl 1 D121 D124
    • (2005) Nucleic Acids Research , vol.33 , Issue.SUPPL. 1
    • Griffiths-Jones, S.1
  • 21
    • 33644750115 scopus 로고    scopus 로고
    • MiRBase: MicroRNA sequences, targets and gene nomenclature
    • S Griffiths-Jones 2006 miRBase: MicroRNA sequences, targets and gene nomenclature Nucleic Acids Research 34 suppl 1 D140 D144
    • (2006) Nucleic Acids Research , vol.34 , Issue.SUPPL. 1
    • Griffiths-Jones, S.1
  • 22
    • 33749845559 scopus 로고    scopus 로고
    • Mining frequent stem patterns from unaligned RNA sequences
    • DOI 10.1093/bioinformatics/btl431
    • M Hamada 2006 Mining frequent stem patterns from unaligned RNA sequences Bioinformatics (Oxford, England) 22 20 2480 2487 10.1093/bioinformatics/btl431 (Pubitemid 44560754)
    • (2006) Bioinformatics , vol.22 , Issue.20 , pp. 2480-2487
    • Hamada, M.1    Tsuda, K.2    Kudo, T.3    Kin, T.4    Asai, K.5
  • 23
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • IL Hofacker 2003 Vienna RNA secondary structure server Nucleic Acids Research 31 13 3429 3431
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3429-3431
    • Hofacker, I.L.1
  • 24
    • 67749145005 scopus 로고    scopus 로고
    • RNA secondary structure analysis using the Vienna RNA package
    • Andreas D. Baxevanis [et Al, Chapter 12, Unit 12.2]
    • Hofacker, I. L. (2004). RNA secondary structure analysis using the Vienna RNA package. Current Protocols in Bioinformatics/Editoral Board, Andreas D. Baxevanis [et Al, Chapter 12, Unit 12.2].
    • (2004) Current Protocols in Bioinformatics/Editoral Board
    • Hofacker I., .L.1
  • 27
    • 25444433586 scopus 로고    scopus 로고
    • Accelerated probabilistic inference of RNA structure evolution
    • I Holmes 2005 Accelerated probabilistic inference of RNA structure evolution BMC Bioinformatics 6 73
    • (2005) BMC Bioinformatics , vol.6 , pp. 73
    • Holmes, I.1
  • 28
    • 37249037158 scopus 로고    scopus 로고
    • RNAspa: A shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
    • Y Horesh 2007 RNAspa: A shortest path approach for comparative prediction of the secondary structure of ncRNA molecules BMC Bioinformatics 8 366
    • (2007) BMC Bioinformatics , vol.8 , pp. 366
    • Horesh, Y.1
  • 29
    • 0041620360 scopus 로고    scopus 로고
    • GPRM: A genetic programming approach to finding common RNA secondary structure elements
    • Y Hu 2003 GPRM: A genetic programming approach to finding common RNA secondary structure elements Nucleic Acids Research 31 13 3446 3449
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3446-3449
    • Hu, Y.1
  • 30
    • 33747821745 scopus 로고    scopus 로고
    • RegRNA: An integrated web server for identifying regulatory RNA motifs and elements
    • H Huang 2006 RegRNA: An integrated web server for identifying regulatory RNA motifs and elements Nucleic Acids Research 34 Web Server issue W429 W434
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB SERVER ISSUE
    • Huang, H.1
  • 31
    • 33644873202 scopus 로고    scopus 로고
    • Transterm-extended search facilities and improved integration with other databases
    • GH Jacobs 2006 Transterm-extended search facilities and improved integration with other databases Nucleic Acids Research 34 Database issue D37 D40
    • (2006) Nucleic Acids Research , vol.34 , Issue.DATABASE ISSUE
    • Jacobs, G.H.1
  • 32
    • 3543051100 scopus 로고    scopus 로고
    • A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences
    • Y Ji X Xu GD Stormo 2004 A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences Bioinformatics (Oxford, England) 20 10 1591 1602
    • (2004) Bioinformatics (Oxford, England) , vol.20 , Issue.10 , pp. 1591-1602
    • Ji, Y.1    Xu, X.2    Stormo, G.D.3
  • 33
    • 44149125756 scopus 로고    scopus 로고
    • Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    • K Katoh H Toh 2008 Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework BMC Bioinformatics 9 212
    • (2008) BMC Bioinformatics , vol.9 , pp. 212
    • Katoh, K.1    Toh, H.2
  • 35
    • 33847262911 scopus 로고    scopus 로고
    • Robust prediction of consensus secondary structures using averaged base pairing probability matrices
    • H Kiryu T Kin K Asai 2007 Robust prediction of consensus secondary structures using averaged base pairing probability matrices Bioinformatics (Oxford, England) 23 4 434 441
    • (2007) Bioinformatics (Oxford, England) , vol.23 , Issue.4 , pp. 434-441
    • Kiryu, H.1    Kin, T.2    Asai, K.3
  • 36
    • 34547844102 scopus 로고    scopus 로고
    • Murlet: A practical multiple alignment tool for structural RNA sequences
    • H Kiryu 2007 Murlet: A practical multiple alignment tool for structural RNA sequences Bioinformatics (Oxford, England) 23 13 1588 1598
    • (2007) Bioinformatics (Oxford, England) , vol.23 , Issue.13 , pp. 1588-1598
    • Kiryu, H.1
  • 37
    • 2942544566 scopus 로고    scopus 로고
    • RSEARCH: Finding homologs of single structured RNA sequences
    • RJ Klein SR Eddy 2003 RSEARCH: Finding homologs of single structured RNA sequences BMC Bioinformatics 4 44
    • (2003) BMC Bioinformatics , vol.4 , pp. 44
    • Klein, R.J.1    Eddy, S.R.2
  • 38
    • 4344641945 scopus 로고    scopus 로고
    • BayesFold: Rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences
    • R Knight A Birmingham M Yarus 2004 BayesFold: Rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences RNA (New York, N.Y.) 10 9 1323 1336
    • (2004) RNA (New York, N.Y.) , vol.10 , Issue.9 , pp. 1323-1336
    • Knight, R.1    Birmingham, A.2    Yarus, M.3
  • 39
    • 0043123155 scopus 로고    scopus 로고
    • Pfold: RNA secondary structure prediction using stochastic context-free grammars
    • B Knudsen J Hein 2003 Pfold: RNA secondary structure prediction using stochastic context-free grammars Nucleic Acids Research 31 13 3423 3428
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3423-3428
    • Knudsen, B.1    Hein, J.2
  • 40
    • 25444444171 scopus 로고    scopus 로고
    • Computing expectation values for RNA motifs using discrete convolutions
    • A Lambert 2005 Computing expectation values for RNA motifs using discrete convolutions BMC Bioinformatics 6 118
    • (2005) BMC Bioinformatics , vol.6 , pp. 118
    • Lambert, A.1
  • 43
    • 33644875300 scopus 로고    scopus 로고
    • SnoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
    • L Lestrade MJ Weber 2006 snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs Nucleic Acids Research 34 Database issue D158 D162
    • (2006) Nucleic Acids Research , vol.34 , Issue.DATABASE ISSUE
    • Lestrade, L.1    Weber, M.J.2
  • 44
    • 36949011603 scopus 로고    scopus 로고
    • MASTR: Multiple alignment and structure prediction of non-coding RNAs using simulated annealing
    • S Lindgreen PP Gardner A Krogh 2007 MASTR: Multiple alignment and structure prediction of non-coding RNAs using simulated annealing Bioinformatics (Oxford, England) 23 24 3304 3311
    • (2007) Bioinformatics (Oxford, England) , vol.23 , Issue.24 , pp. 3304-3311
    • Lindgreen, S.1    Gardner, P.P.2    Krogh, A.3
  • 45
    • 25444512062 scopus 로고    scopus 로고
    • A method for aligning RNA secondary structures and its application to RNA motif detection
    • J Liu 2005 A method for aligning RNA secondary structures and its application to RNA motif detection BMC Bioinformatics 6 89
    • (2005) BMC Bioinformatics , vol.6 , pp. 89
    • Liu, J.1
  • 46
    • 0035890840 scopus 로고    scopus 로고
    • RNAMotif, an RNA secondary structure definition and search algorithm
    • TJ Macke 2001 RNAMotif, an RNA secondary structure definition and search algorithm Nucleic Acids Research 29 22 4724 4735
    • (2001) Nucleic Acids Research , vol.29 , Issue.22 , pp. 4724-4735
    • MacKe, T.J.1
  • 48
    • 34548443728 scopus 로고    scopus 로고
    • SimulFold: Simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework
    • IM Meyer I Miklós 2007 SimulFold: Simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework PLoS Computational Biology 3 8 e149
    • (2007) PLoS Computational Biology , vol.3 , Issue.8 , pp. 149
    • Meyer, I.M.1    Miklós, I.2
  • 49
    • 13444301473 scopus 로고    scopus 로고
    • UTRdb and UTRsite: A collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
    • F Mignone 2005 UTRdb and UTRsite: A collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs Nucleic Acids Research 33 suppl-1 D141 D146
    • (2005) Nucleic Acids Research , vol.33 , Issue.SUPPL-1
    • Mignone, F.1
  • 50
    • 48449091838 scopus 로고    scopus 로고
    • R-Coffee: A web server for accurately aligning noncoding RNA sequences
    • S Moretti 2007 R-Coffee: A web server for accurately aligning noncoding RNA sequences Nucleic Acids Research 36 Web Server issue W10 W13
    • (2007) Nucleic Acids Research , vol.36 , Issue.WEB SERVER ISSUE
    • Moretti, S.1
  • 51
    • 2942694026 scopus 로고    scopus 로고
    • RNAProfile: An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
    • G Pavesi 2004 RNAProfile: An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences Nucleic Acids Research 32 10 3258 3269
    • (2004) Nucleic Acids Research , vol.32 , Issue.10 , pp. 3258-3269
    • Pavesi, G.1
  • 52
    • 33646272409 scopus 로고    scopus 로고
    • Identification and classification of conserved RNA secondary structures in the human genome
    • JS Pedersen 2006 Identification and classification of conserved RNA secondary structures in the human genome PLoS Computational Biology 2 4 e33
    • (2006) PLoS Computational Biology , vol.2 , Issue.4 , pp. 33
    • Pedersen, J.S.1
  • 53
    • 0033198381 scopus 로고    scopus 로고
    • Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNAs
    • G Pesole S Liuni 1999 Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNAs Trends in Genetics: TIG 15 9 378
    • (1999) Trends in Genetics: TIG , vol.15 , Issue.9 , pp. 378
    • Pesole, G.1    Liuni, S.2
  • 55
    • 0003157183 scopus 로고    scopus 로고
    • Noncoding RNA gene detection using comparative sequence analysis
    • E Rivas SR Eddy 2001 Noncoding RNA gene detection using comparative sequence analysis BMC Bioinformatics 2 8
    • (2001) BMC Bioinformatics , vol.2 , pp. 8
    • Rivas, E.1    Eddy, S.R.2
  • 56
    • 33645376746 scopus 로고    scopus 로고
    • The subviral RNA Database: A toolbox for viroids, the hepatitis delta virus and satellite RNAs research
    • L Rocheleau M Pelchat 2006 The subviral RNA Database: A toolbox for viroids, the hepatitis delta virus and satellite RNAs research BMC Microbiology 6 24
    • (2006) BMC Microbiology , vol.6 , pp. 24
    • Rocheleau, L.1    Pelchat, M.2
  • 57
    • 0347724163 scopus 로고    scopus 로고
    • An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
    • J Ruan GD Stormo W Zhang 2004 An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots Bioinformatics (Oxford, England) 20 1 58 66
    • (2004) Bioinformatics (Oxford, England) , vol.20 , Issue.1 , pp. 58-66
    • Ruan, J.1    Stormo, G.D.2    Zhang, W.3
  • 58
    • 4944232234 scopus 로고    scopus 로고
    • Pair hidden Markov models on tree structures
    • Y Sakakibara 2003 Pair hidden Markov models on tree structures Bioinformatics (Oxford, England) 19 Suppl 1 i232 i240
    • (2003) Bioinformatics (Oxford, England) , vol.19 , Issue.SUPPL 1
    • Sakakibara, Y.1
  • 60
    • 24044519380 scopus 로고    scopus 로고
    • MARNA: Multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons
    • S Siebert R Backofen 2005 MARNA: Multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons Bioinformatics (Oxford, England) 21 16 3352 3359
    • (2005) Bioinformatics (Oxford, England) , vol.21 , Issue.16 , pp. 3352-3359
    • Siebert, S.1    Backofen, R.2
  • 61
    • 32544440797 scopus 로고    scopus 로고
    • RNAshapes: An integrated RNA analysis package based on abstract shapes
    • P Steffen 2006 RNAshapes: An integrated RNA analysis package based on abstract shapes Bioinformatics (Oxford, England) 22 4 500 503
    • (2006) Bioinformatics (Oxford, England) , vol.22 , Issue.4 , pp. 500-503
    • Steffen, P.1
  • 62
    • 41749122381 scopus 로고    scopus 로고
    • A fast structural multiple alignment method for long RNA sequences
    • Y Tabei 2007 A fast structural multiple alignment method for long RNA sequences BMC Bioinformatics 9 33
    • (2007) BMC Bioinformatics , vol.9 , pp. 33
    • Tabei, Y.1
  • 63
    • 33748672893 scopus 로고    scopus 로고
    • Searching RNA motifs and their intermolecular contacts with constraint networks
    • P Thébault 2006 Searching RNA motifs and their intermolecular contacts with constraint networks Bioinformatics (Oxford, England) 22 17 2074 2080
    • (2006) Bioinformatics (Oxford, England) , vol.22 , Issue.17 , pp. 2074-2080
    • Thébault, P.1
  • 64
    • 36549049306 scopus 로고    scopus 로고
    • Comparative analysis of RNA genes: The caRNAc software
    • H Touzet 2007 Comparative analysis of RNA genes: The caRNAc software Methods in Molecular Biology (Clifton, N.J.) 395 465 474
    • (2007) Methods in Molecular Biology (Clifton, N.J.) , vol.395 , pp. 465-474
    • Touzet, H.1
  • 67
    • 34247598415 scopus 로고    scopus 로고
    • Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
    • S Will 2007 Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering PLoS Computational Biology 3 4 e65
    • (2007) PLoS Computational Biology , vol.3 , Issue.4 , pp. 65
    • Will, S.1
  • 68
    • 44349140636 scopus 로고    scopus 로고
    • R-Coffee: A method for multiple alignment of non-coding RNA
    • A Wilm DG Higgins C Notredame 2007 R-Coffee: A method for multiple alignment of non-coding RNA Nucleic Acids Research 36 9 e52
    • (2007) Nucleic Acids Research , vol.36 , Issue.9 , pp. 52
    • Wilm, A.1    Higgins, D.G.2    Notredame, C.3
  • 69
    • 44649166879 scopus 로고    scopus 로고
    • ConStruct: Improved construction of RNA consensus structures
    • A Wilm K Linnenbrink G Steger 2007 ConStruct: Improved construction of RNA consensus structures BMC Bioinformatics 9 219
    • (2007) BMC Bioinformatics , vol.9 , pp. 219
    • Wilm, A.1    Linnenbrink, K.2    Steger, G.3
  • 70
    • 33846056836 scopus 로고    scopus 로고
    • Sno/scaRNAbase: A curated database for small nucleolar RNAs and cajal body-specific RNAs
    • J Xie 2007 Sno/scaRNAbase: A curated database for small nucleolar RNAs and cajal body-specific RNAs Nucleic Acids Research 35 Database issue D183 D187
    • (2007) Nucleic Acids Research , vol.35 , Issue.DATABASE ISSUE
    • Xie, J.1
  • 71
    • 34548131258 scopus 로고    scopus 로고
    • RNA sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment
    • X Xu Y Ji GD Stormo 2007 RNA sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment Bioinformatics (Oxford, England) 23 15 1883 1891
    • (2007) Bioinformatics (Oxford, England) , vol.23 , Issue.15 , pp. 1883-1891
    • Xu, X.1    Ji, Y.2    Stormo, G.D.3
  • 72
    • 34547995219 scopus 로고    scopus 로고
    • RScan: Fast searching structural similarities for structured RNAs in large databases
    • C Xue G Liu 2007 RScan: Fast searching structural similarities for structured RNAs in large databases BMC Genomics 8 257
    • (2007) BMC Genomics , vol.8 , pp. 257
    • Xue, C.1    Liu, G.2
  • 73
    • 32544452741 scopus 로고    scopus 로고
    • CMfinder-A covariance model based RNA motif finding algorithm
    • Z Yao Z Weinberg WL Ruzzo 2006 CMfinder-A covariance model based RNA motif finding algorithm Bioinformatics (Oxford, England) 22 4 445 452
    • (2006) Bioinformatics (Oxford, England) , vol.22 , Issue.4 , pp. 445-452
    • Yao, Z.1    Weinberg, Z.2    Ruzzo, W.L.3
  • 75
    • 38549132349 scopus 로고    scopus 로고
    • GISSD: Group i Intron Sequence and Structure Database
    • Y Zhou 2007 GISSD: Group I Intron Sequence and Structure Database Nucleic Acids Research 36 Database issue D31 D37
    • (2007) Nucleic Acids Research , vol.36 , Issue.DATABASE ISSUE
    • Zhou, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.