메뉴 건너뛰기




Volumn 395, Issue , 2007, Pages 465-473

Comparative analysis of RNA genes: The caRNAc software

(1)  Touzet, Hélène a  

a NONE

Author keywords

Comparative analysis; In silico folding; RNA; Structure prediction; Thermodynamic model

Indexed keywords

RNA;

EID: 36549049306     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-514-8:465     Document Type: Article
Times cited : (4)

References (15)
  • 1
    • 0035656688 scopus 로고    scopus 로고
    • Non-coding RNA genes and the modern RNA world
    • Eddy, S. R. (2001) Non-coding RNA genes and the modern RNA world. Nat. Rev. Gen. 2, 919-929.
    • (2001) Nat. Rev. Gen , vol.2 , pp. 919-929
    • Eddy, S.R.1
  • 2
    • 8344234215 scopus 로고    scopus 로고
    • How do RNA folding algorithms work
    • Eddy, S. R. (2004) How do RNA folding algorithms work. Nat. Biotechnol. 22, 1457-1458.
    • (2004) Nat. Biotechnol , vol.22 , pp. 1457-1458
    • Eddy, S.R.1
  • 3
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 4
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • Barciszewski, J. and Clark, B.F.C, eds, Kluwer Academic Publishers, Dordrecht/Norwell, MA
    • Zuker, M., Mathews, D. H., and Turner, D. H. (1999) Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide, in RNA Biochemistry and Biotechnology, (Barciszewski, J. and Clark, B.F.C., eds.), Kluwer Academic Publishers, Dordrecht/Norwell, MA.
    • (1999) RNA Biochemistry and Biotechnology
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3
  • 5
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker, I. L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res. 31, 3429-3431.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 6
    • 28744440207 scopus 로고    scopus 로고
    • Comparative analysis of RNA secondary structure: The 6S RNA
    • Bindereif, A, Hartmann, R, Schön, A, and Westhof, E, eds, Wiley-VCH, Weinheim, Germany
    • Brown, J. W. and Ellis, J. C. (2005) Comparative analysis of RNA secondary structure: the 6S RNA, in Handbook of RN A Biochemistry, (Bindereif, A., Hartmann, R., Schön, A., and Westhof, E., eds.), Wiley-VCH, Weinheim, Germany.
    • (2005) Handbook of RN A Biochemistry
    • Brown, J.W.1    Ellis, J.C.2
  • 7
    • 17844386108 scopus 로고    scopus 로고
    • A benchmark of multiple sequence alignment programs upon structural RNAs
    • Gardner, P., Wilm, A., and Washietl, S. (2005) A benchmark of multiple sequence alignment programs upon structural RNAs. Nucleic Acids Res. 33, 2433-2439.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2433-2439
    • Gardner, P.1    Wilm, A.2    Washietl, S.3
  • 8
    • 0037252550 scopus 로고    scopus 로고
    • Finding the common structure shared by two homologous RNAs
    • Perriquet, O., Touzet, H., and Dauchet, M. (2003) Finding the common structure shared by two homologous RNAs. Bioinformatics 19, 108-116.
    • (2003) Bioinformatics , vol.19 , pp. 108-116
    • Perriquet, O.1    Touzet, H.2    Dauchet, M.3
  • 9
    • 3242882720 scopus 로고    scopus 로고
    • CARNAC: Folding families of non coding RNAs
    • Touzet, H. and Perriquet, O. (2004) CARNAC: folding families of non coding RNAs. Nucleic Acids Res. 142, W142-W145.
    • (2004) Nucleic Acids Res , vol.142
    • Touzet, H.1    Perriquet, O.2
  • 10
    • 13344262673 scopus 로고    scopus 로고
    • A comprehensive comparison of comparative RNA structure prediction approaches
    • Gardner, P. and Giegerich, R. (2005) A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics 5, 140.
    • (2005) BMC Bioinformatics , vol.5 , pp. 140
    • Gardner, P.1    Giegerich, R.2
  • 11
    • 0023984838 scopus 로고
    • An improved algorithm for nucleic acid secondary structure display
    • Bruccoleri, R. and Heinrich, G. (1988) An improved algorithm for nucleic acid secondary structure display. Comput. Appl. Biosci. 4, 167-173.
    • (1988) Comput. Appl. Biosci , vol.4 , pp. 167-173
    • Bruccoleri, R.1    Heinrich, G.2
  • 12
    • 0036301332 scopus 로고    scopus 로고
    • Secondary structure prediction for aligned RNA sequences
    • Hofacker, I. L., Fekete, M., and Stadler, P. F. (2002) Secondary structure prediction for aligned RNA sequences. J. Mol. Biol. 319, 1059-1066.
    • (2002) J. Mol. Biol , vol.319 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.F.3
  • 13
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive-multiple sequence alignment through sequence weighting.position- specific gap penalties and weight matrix choice
    • Higgins, D., Thompson, J., Gibson, T., Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive-multiple sequence alignment through sequence weighting.position- specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3    Thompson, J.D.4    Higgins, D.G.5    Gibson, T.J.6
  • 14
    • 23144463133 scopus 로고    scopus 로고
    • Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
    • Xayaphoummine, A., Bucher, T., and Isambert, H. (2005) Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots, Nucleic Acid Res. 33, 605-610.
    • (2005) Nucleic Acid Res , vol.33 , pp. 605-610
    • Xayaphoummine, A.1    Bucher, T.2    Isambert, H.3
  • 15
    • 3543051100 scopus 로고    scopus 로고
    • A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences
    • Ji, Y., Xu, X., and Stormo, G. D. (2004) A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. Bioinformatics 20, 1591-1602.
    • (2004) Bioinformatics , vol.20 , pp. 1591-1602
    • Ji, Y.1    Xu, X.2    Stormo, G.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.