-
2
-
-
0037123632
-
An expanding universe of noncoding KNAs
-
G. Storz, An expanding universe of noncoding KNAs. Science 296, 2002, pp. 1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
3
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
S.R. Eddy, Non-coding RNA genes and the modern RNA world. Nature Rev Genet 2, 2001, pp. 919-929.
-
(2001)
Nature Rev Genet
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
4
-
-
0024518918
-
The HTV-1 rev tram-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA
-
M.H. Malim, J. Hauber, S.-Y. Le, J.V. Maizel Jr., and B.R. Cullen, The HTV-1 rev tram-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA, Nature 338, 1989, pp. 254-257.
-
(1989)
Nature
, vol.338
, pp. 254-257
-
-
Malim, M.H.1
Hauber, J.2
Le, S.-Y.3
Maizel Jr., J.V.4
Cullen, B.R.5
-
5
-
-
0030218003
-
Translational regulation of maternal mRNAs
-
P.M. Macdonald, and C.A. Smibert, Translational regulation of maternal mRNAs. Curr Opin Genet Dev 6, 1996, pp. 403-407.
-
(1996)
Curr Opin Genet Dev
, vol.6
, pp. 403-407
-
-
Macdonald, P.M.1
Smibert, C.A.2
-
6
-
-
0035195942
-
Non-coding RNAs: The architects of eukaryotic complexity
-
J.S. Mattick, Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep. 2, 2001, pp. 986-991.
-
(2001)
EMBO Rep.
, vol.2
, pp. 986-991
-
-
Mattick, J.S.1
-
7
-
-
0024411889
-
Characterization of an efficient coronavirus ribosomal frameshifting signal requirement for an RNA pseudoknot
-
I. Brierley, P. Digard, and S.C. Inglis, Characterization of an efficient coronavirus ribosomal frameshifting signal requirement for an RNA pseudoknot. Cell 57, 1989, pp. 537-547.
-
(1989)
Cell
, vol.57
, pp. 537-547
-
-
Brierley, I.1
Digard, P.2
Inglis, S.C.3
-
8
-
-
0030059840
-
RNA recognition and translational regulation by a homeodomain protein
-
J. Dubnau, and G. Struhl, RNA recognition and translational regulation by a homeodomain protein. Nature 379, 1996, pp. 694-699.
-
(1996)
Nature
, vol.379
, pp. 694-699
-
-
Dubnau, J.1
Struhl, G.2
-
9
-
-
0035396727
-
Internal ribosome entry sites in eukaryotic mRNA molecules
-
C.U.T. Hellen, and P. Sarnow, Internal ribosome entry sites in eukaryotic mRNA molecules. Genes & Development 15, 2001, pp. 1593-1612.
-
(2001)
Genes & Development
, vol.15
, pp. 1593-1612
-
-
Hellen, C.U.T.1
Sarnow, P.2
-
10
-
-
0024246416
-
A model for the structure and functions of iron-responsive elements
-
M.W. Hentze, S.W. Caughman, J.L. Casey, D.M. Koeller, T.A. Rouault, J.B. Harford, and R.D. Klausner, A model for the structure and functions of iron-responsive elements. Gene 72, 1988, pp. 201-208.
-
(1988)
Gene
, vol.72
, pp. 201-208
-
-
Hentze, M.W.1
Caughman, S.W.2
Casey, J.L.3
Koeller, D.M.4
Rouault, T.A.5
Harford, J.B.6
Klausner, R.D.7
-
11
-
-
0036703297
-
Evolutionarily different RNA motifs and RNA-protein complexes to achieve selenoprotein synthesis
-
A. Krol, Evolutionarily different RNA motifs and RNA-protein complexes to achieve selenoprotein synthesis. Biochimie 84, 2002, pp. 765-774.
-
(2002)
Biochimie
, vol.84
, pp. 765-774
-
-
Krol, A.1
-
12
-
-
0029880537
-
Strategies for RNA folding
-
D.E. Draper, Strategies for RNA folding. Trends Biochem Sci 21, 1996, pp. 145-149.
-
(1996)
Trends Biochem Sci
, vol.21
, pp. 145-149
-
-
Draper, D.E.1
-
13
-
-
0028258377
-
An RNA pattern matching program with enhanced performance and portability
-
A. Laferriere, D. Gautheret and R. Cedergren, An RNA pattern matching program with enhanced performance and portability. Comput. Appl. biosci. 10, 1994, pp. 211-212.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 211-212
-
-
Laferriere, A.1
Gautheret, D.2
Cedergren, R.3
-
14
-
-
0029986908
-
Palingol: A declarative programming language to describe nucleic acids' secondary structures and to scan sequence database
-
B. Billoud, M. Kontic, and A. Viari, Palingol: a declarative programming language to describe nucleic acids' secondary structures and to scan sequence database. Nucleic Acids Res. 24, 1996, pp. 1395-1403.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1395-1403
-
-
Billoud, B.1
Kontic, M.2
Viari, A.3
-
15
-
-
0041620253
-
PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences
-
G. Grillo, F. Licciulli, S. Liuni, E. Sbisa and G. Pesole, PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. Nucleic Acids Res. 31, 2003, pp. 3608-3612.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3608-3612
-
-
Grillo, G.1
Licciulli, F.2
Liuni, S.3
Sbisa, E.4
Pesole, G.5
-
16
-
-
0031438685
-
Earching for patterns in genomic data
-
M. Dsouza, N. Larsen and R. Overbeek, earching for patterns in genomic data. Trends Genet. 13, 1997, pp. 497-498.
-
(1997)
Trends Genet.
, vol.13
, pp. 497-498
-
-
Dsouza, M.1
Larsen, N.2
Overbeek, R.3
-
17
-
-
0035890840
-
RNAMotif, an RNA secondary structure definition and search algorithm
-
T.J. Macke, D.J. Ecker, R.R. Gutell, D. Gautheret, D.A. Case and R. Sampath, RNAMotif, an RNA secondary structure definition and search algorithm. Nucleic Acids Res. 29, 2001, pp. 4724-4735.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4724-4735
-
-
Macke, T.J.1
Ecker, D.J.2
Gutell, R.R.3
Gautheret, D.4
Case, D.A.5
Sampath, R.6
-
18
-
-
0035834489
-
Direct RNA motif definition and identification from multiple sequence lignments using secondary structure profiles
-
D. Gautheret and A. Lambert, Direct RNA motif definition and identification from multiple sequence lignments using secondary structure profiles. J. Mol Biol. 313, 2001, pp. 1003-1011.
-
(2001)
J. Mol Biol.
, vol.313
, pp. 1003-1011
-
-
Gautheret, D.1
Lambert, A.2
-
19
-
-
0025864008
-
Identifying potential tRNA genes in genomic DNA equences
-
G.A. Fichant and C. Burks, Identifying potential tRNA genes in genomic DNA equences. J. Mol Biol. 220, 1991, pp. 659-671.
-
(1991)
J. Mol Biol.
, vol.220
, pp. 659-671
-
-
Fichant, G.A.1
Burks, C.2
-
20
-
-
0028214356
-
Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions
-
A. Pavesi, F. Conterio, A. Bolchi, G. Dieci and S. Ottonello, Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions. Nucleic Acids Res. 22, 1994, pp. 1247-1256.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1247-1256
-
-
Pavesi, A.1
Conterio, F.2
Bolchi, A.3
Dieci, G.4
Ottonello, S.5
-
21
-
-
0028272315
-
RNA sequence analysis using covariance models
-
S.R. Eddy and R. Durbin, RNA sequence analysis using covariance models. Nucleic Acids Res. 22, 1994, pp. 2079-2088
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2079-2088
-
-
Eddy, S.R.1
Durbin, R.2
-
22
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
T.M. Lowe and S.R. Eddy, tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 1997, pp. 955-964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
23
-
-
0037102582
-
RNA molecules with structure dependent functions are uniquely folded
-
S.Y. Le, K. Zhang and J.V. Maizel, Jr. RNA molecules with structure dependent functions are uniquely folded. Nucleic Acids Res. 30, 2002, pp. 3574-3582.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3574-3582
-
-
Le, S.Y.1
Zhang, K.2
Maizel Jr., J.V.3
-
24
-
-
0035504055
-
A new algorithm for computing similarity between RNA structures
-
G.D. Collins, S.Y. Le and K. Zhang, A new algorithm for computing similarity between RNA structures. Information Sciences 139, 2001, pp. 59-77.
-
(2001)
Information Sciences
, vol.139
, pp. 59-77
-
-
Collins, G.D.1
Le, S.Y.2
Zhang, K.3
-
25
-
-
0033985046
-
5S ribosomal RNA database Y2K
-
M. Szymanski, M.Z. Barciszewska, J. Barciszewski and V.A. Erdmann, 5S ribosomal RNA database Y2K. Nucteic Acids Res. 28, 2000, pp. 166-167.
-
(2000)
Nucteic Acids Res.
, vol.28
, pp. 166-167
-
-
Szymanski, M.1
Barciszewska, M.Z.2
Barciszewski, J.3
Erdmann, V.A.4
-
28
-
-
0037029329
-
Computing similarity between RNA structures
-
B. Ma, L. Wang, and K. Zhang, "Computing similarity between RNA structures", Theoretical Computer Science. 276, 2002, pp. 111-132.
-
(2002)
Theoretical Computer Science
, vol.276
, pp. 111-132
-
-
Ma, B.1
Wang, L.2
Zhang, K.3
-
29
-
-
0036100835
-
A general edit distance between RNA structures
-
T. Jiang, G. H. Lin, B. Ma and K. Zhang, A general edit distance between RNA structures. Journal of Computational Biology, 9, 2002, pp. 371-388.
-
(2002)
Journal of Computational Biology
, vol.9
, pp. 371-388
-
-
Jiang, T.1
Lin, G.H.2
Ma, B.3
Zhang, K.4
-
30
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
O. Gotoh, An improved algorithm for matching biological sequences. J. Mol. Biol., 162, 1982, pp.705-708.
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
32
-
-
0027982394
-
RNAlign program: Alignment of RNA sequences using both primary and secondary structures
-
F. Corpet and B. Michot, RNAlign program: Alignment of RNA sequences using both primary and secondary structures. Comput. Apptic. Biosci. 10, 1994, pp. 389-399.
-
(1994)
Comput. Apptic. Biosci.
, vol.10
, pp. 389-399
-
-
Corpet, F.1
Michot, B.2
-
33
-
-
0031750905
-
A polyhedral approach to RNA sequence structure alignment
-
H.P. Lenhof, K. Reinert, M. Vingron, A polyhedral approach to RNA sequence structure alignment. J. Comput. Biol. 5, 1998, pp. 517-530.
-
(1998)
J. Comput. Biol.
, vol.5
, pp. 517-530
-
-
Lenhof, H.P.1
Reinert, K.2
Vingron, M.3
-
34
-
-
2942607685
-
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
-
S.R. Eddy, A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics, 3:18, 2002.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 18
-
-
Eddy, S.R.1
|