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Volumn 191, Issue 15, 2009, Pages 4896-4904

Identification and gene disruption of small noncoding RNAs in Streptomyces griseus

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSFER RNA; UNTRANSLATED RNA;

EID: 67749114255     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00087-09     Document Type: Article
Times cited : (23)

References (36)
  • 1
    • 0031459386 scopus 로고    scopus 로고
    • A small, stable RNA induced by oxidative stress: Role as a pleiotropic regulator and antimutator
    • Altuvia, S., D. Weinstein-Fischer, A. Zhang, L. Postow, and G. Storz. 1997. A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator. Cell 90:43-53.
    • (1997) Cell , vol.90 , pp. 43-53
    • Altuvia, S.1    Weinstein-Fischer, D.2    Zhang, A.3    Postow, L.4    Storz, G.5
  • 3
    • 0037046560 scopus 로고    scopus 로고
    • Bentley, S. D., K. F. Chater, A. M. Cerdeño-Tárraga, G. L. Challis, N. R. Thomson, K. D. James, D. E. Harris, M. A. Quail, H. Kieser, D. Harper, A. Bateman, S. Brown, G. Chandra, C. W. Chen, M. Collins, A. Cronin, A. Fraser, A. Goble, J. Hidalgo, T. Hornsby, S. Howarth, C. H. Huang, T. Kieser, L. Larke, L. Murphy, K. Oliver, S. O'Neil, E. Rabbinowitsch, M. A. Rajandream, K. Rutherford, S. Rutter, K. Seeger, D. Saunders, S. Sharp, R. Squares, S. Squares, K. Taylor, T. Warren, A. Wietzorrek, J. Woodward, B. G. Barrell, J. Parkhill, and D. A. Hopwood. 2002. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147.
    • Bentley, S. D., K. F. Chater, A. M. Cerdeño-Tárraga, G. L. Challis, N. R. Thomson, K. D. James, D. E. Harris, M. A. Quail, H. Kieser, D. Harper, A. Bateman, S. Brown, G. Chandra, C. W. Chen, M. Collins, A. Cronin, A. Fraser, A. Goble, J. Hidalgo, T. Hornsby, S. Howarth, C. H. Huang, T. Kieser, L. Larke, L. Murphy, K. Oliver, S. O'Neil, E. Rabbinowitsch, M. A. Rajandream, K. Rutherford, S. Rutter, K. Seeger, D. Saunders, S. Sharp, R. Squares, S. Squares, K. Taylor, T. Warren, A. Wietzorrek, J. Woodward, B. G. Barrell, J. Parkhill, and D. A. Hopwood. 2002. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147.
  • 4
    • 0022404392 scopus 로고
    • Cloning and analysis of the promoter region of the erythromycin resistance gene (ermE) of Streptomyces erythraeus
    • Bibb, M. J., G. R. Janssen, and J. M. Ward. 1985. Cloning and analysis of the promoter region of the erythromycin resistance gene (ermE) of Streptomyces erythraeus. Gene 38:215-226.
    • (1985) Gene , vol.38 , pp. 215-226
    • Bibb, M.J.1    Janssen, G.R.2    Ward, J.M.3
  • 5
    • 0025099358 scopus 로고
    • Disruption of a rhodanese-like gene results in cysteine auxotrophy in Saccharopolyspora erythraea
    • Donadio, S., A. Shafiee, and C. R. Hutchinson. 1990. Disruption of a rhodanese-like gene results in cysteine auxotrophy in Saccharopolyspora erythraea. J. Bacteriol. 172:350-360.
    • (1990) J. Bacteriol , vol.172 , pp. 350-360
    • Donadio, S.1    Shafiee, A.2    Hutchinson, C.R.3
  • 6
    • 42949119908 scopus 로고    scopus 로고
    • Conditionally positive effect of the TetR-family transcriptional regulator AtrA on streptomycin production by Streptomyces griseus
    • Hirano, S., K. Tanaka, Y. Ohnishi, and S. Horinouchi. 2008. Conditionally positive effect of the TetR-family transcriptional regulator AtrA on streptomycin production by Streptomyces griseus. Microbiology 154:905-914.
    • (2008) Microbiology , vol.154 , pp. 905-914
    • Hirano, S.1    Tanaka, K.2    Ohnishi, Y.3    Horinouchi, S.4
  • 7
    • 33847408410 scopus 로고    scopus 로고
    • Mining and polishing of the treasure trove in the bacterial genus Streptomyces
    • Horinouchi, S. 2007. Mining and polishing of the treasure trove in the bacterial genus Streptomyces. Biosci. Biotechnol. Biochem. 71:283-299.
    • (2007) Biosci. Biotechnol. Biochem , vol.71 , pp. 283-299
    • Horinouchi, S.1
  • 8
    • 37548998935 scopus 로고    scopus 로고
    • Hormonal control by A-factor of morphological development and secondary metabolism in Streptomyces
    • Horinouchi, S., and T. Beppu. 2007. Hormonal control by A-factor of morphological development and secondary metabolism in Streptomyces. Proc. Jpn. Acad. Ser. B 83:277-295.
    • (2007) Proc. Jpn. Acad. Ser. B , vol.83 , pp. 277-295
    • Horinouchi, S.1    Beppu, T.2
  • 9
    • 0021324641 scopus 로고
    • Unstable genetic determinant of A-factor biosynthesis in streptomycin-producing organisms: Cloning and characterization
    • Horinouchi, S., Y. Kumada, and T. Beppu. 1984. Unstable genetic determinant of A-factor biosynthesis in streptomycin-producing organisms: cloning and characterization. J. Bacteriol. 158:481-487.
    • (1984) J. Bacteriol , vol.158 , pp. 481-487
    • Horinouchi, S.1    Kumada, Y.2    Beppu, T.3
  • 12
    • 0031968766 scopus 로고    scopus 로고
    • Developmental regulation of transcription of whiE, a locus specifying the polyketide spore pigment in Streptomyces coelicolor A3(2)
    • Kelemen, G. H., P. Brian, K. Flärdh, L. Chamberlin, K. F. Chater, and M. J. Buttner. 1998. Developmental regulation of transcription of whiE, a locus specifying the polyketide spore pigment in Streptomyces coelicolor A3(2). J. Bacteriol. 180:2515-2521.
    • (1998) J. Bacteriol , vol.180 , pp. 2515-2521
    • Kelemen, G.H.1    Brian, P.2    Flärdh, K.3    Chamberlin, L.4    Chater, K.F.5    Buttner, M.J.6
  • 14
    • 48649091869 scopus 로고    scopus 로고
    • Glycine cleavage system: Reaction mechanism, physiological significance, and hyperglycinemia
    • Kikuchi, G., Y. Motokawa, T. Yoshida, and K. Hiraga. 2008. Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia. Proc. Jpn. Acad. Ser. B 84:246-263.
    • (2008) Proc. Jpn. Acad. Ser. B , vol.84 , pp. 246-263
    • Kikuchi, G.1    Motokawa, Y.2    Yoshida, T.3    Hiraga, K.4
  • 15
    • 3142564584 scopus 로고    scopus 로고
    • The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
    • Lenz, D. H., K. C. Mok, B. N. Lilley, R. V. Kulkarni, N. S. Wingreen, and B. L. Bassler. 2004. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118:69-82.
    • (2004) Cell , vol.118 , pp. 69-82
    • Lenz, D.H.1    Mok, K.C.2    Lilley, B.N.3    Kulkarni, R.V.4    Wingreen, N.S.5    Bassler, B.L.6
  • 16
    • 5044234799 scopus 로고    scopus 로고
    • A glycine-dependent riboswitch that uses cooperative binding to control gene expression
    • Mandal, M., M. Lee, J. E. Barrick, Z. Weinberg, G. M. Emilsson, W. L. Ruzzo, and R. R. Breaker. 2004. A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306:275-279.
    • (2004) Science , vol.306 , pp. 275-279
    • Mandal, M.1    Lee, M.2    Barrick, J.E.3    Weinberg, Z.4    Emilsson, G.M.5    Ruzzo, W.L.6    Breaker, R.R.7
  • 18
    • 0037007078 scopus 로고    scopus 로고
    • A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
    • Masse, E., and S. Gottesman. 2002. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl. Acad. Sci. USA 99:4620-4625.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 4620-4625
    • Masse, E.1    Gottesman, S.2
  • 19
    • 17844392892 scopus 로고    scopus 로고
    • AdpA, a central transcriptional regulator in the A-factor regulatory cascade that leads to morphological development and secondary metabolism in Streptomyces griseus
    • Ohnishi, Y., H. Yamazaki, J. Kato, A. Tomono, and S. Horinouchi. 2005. AdpA, a central transcriptional regulator in the A-factor regulatory cascade that leads to morphological development and secondary metabolism in Streptomyces griseus. Biosci. Biotechnol. Biochem. 69:431-439.
    • (2005) Biosci. Biotechnol. Biochem , vol.69 , pp. 431-439
    • Ohnishi, Y.1    Yamazaki, H.2    Kato, J.3    Tomono, A.4    Horinouchi, S.5
  • 21
    • 0032847109 scopus 로고    scopus 로고
    • The A-factor regulatory cascade leading to streptomycin biosynthesis in Streptomyces griseus: Identification of a target gene of the A-factor receptor
    • Ohnishi, Y., S. Kameyama, H. Onaka, and S. Horinouchi. 1999. The A-factor regulatory cascade leading to streptomycin biosynthesis in Streptomyces griseus: identification of a target gene of the A-factor receptor. Mol. Microbiol. 34:102-111.
    • (1999) Mol. Microbiol , vol.34 , pp. 102-111
    • Ohnishi, Y.1    Kameyama, S.2    Onaka, H.3    Horinouchi, S.4
  • 22
    • 0030836620 scopus 로고    scopus 로고
    • DNA-binding activity of the A-factor receptor protein and its recognition DNA sequences
    • Onaka, H., and S. Horinouchi. 1997. DNA-binding activity of the A-factor receptor protein and its recognition DNA sequences. Mol. Microbiol. 24:991-1000.
    • (1997) Mol. Microbiol , vol.24 , pp. 991-1000
    • Onaka, H.1    Horinouchi, S.2
  • 23
    • 44849094549 scopus 로고    scopus 로고
    • Biocomputational prediction of small non-coding RNAs in Streptomyces
    • Panek, J., J. Bobek, K. Mikulik, M. Basler, and J. Vohradsky. 2008. Biocomputational prediction of small non-coding RNAs in Streptomyces. BMC Genomics 9:217.
    • (2008) BMC Genomics , vol.9 , pp. 217
    • Panek, J.1    Bobek, J.2    Mikulik, K.3    Basler, M.4    Vohradsky, J.5
  • 24
    • 0038187589 scopus 로고    scopus 로고
    • Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: The RpoS paradigm
    • Repoila, F., N. Majdalani, and S. Gottesman. 2003. Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm. Mol. Microbiol. 48:855-861.
    • (2003) Mol. Microbiol , vol.48 , pp. 855-861
    • Repoila, F.1    Majdalani, N.2    Gottesman, S.3
  • 25
    • 33646483181 scopus 로고    scopus 로고
    • The role of RNAs in the regulation of virulence gene expression
    • Romby, P., F. Vandenesch, and E. G. Wagner. 2006. The role of RNAs in the regulation of virulence gene expression. Curr. Opin. Microbiol. 9:229-236.
    • (2006) Curr. Opin. Microbiol , vol.9 , pp. 229-236
    • Romby, P.1    Vandenesch, F.2    Wagner, E.G.3
  • 26
    • 0029739317 scopus 로고    scopus 로고
    • The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli
    • Sledjeski, D. D., A. Gupta, and S. Gottesman. 1996. The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli. EMBO J. 15:3993-4000.
    • (1996) EMBO J , vol.15 , pp. 3993-4000
    • Sledjeski, D.D.1    Gupta, A.2    Gottesman, S.3
  • 28
    • 20444478991 scopus 로고    scopus 로고
    • Riboswitches as versatile gene control elements
    • Tucker, B. J., and R. R. Breaker. 2005. Riboswitches as versatile gene control elements. Curr. Opin. Struct. Biol. 15:342-348.
    • (2005) Curr. Opin. Struct. Biol , vol.15 , pp. 342-348
    • Tucker, B.J.1    Breaker, R.R.2
  • 29
    • 1642565815 scopus 로고    scopus 로고
    • The bacterial Sm-like protein Hfq: A key player in RNA transactions
    • Valentin-Hansen, P., M. Eriksen, and C. Udesen. 2004. The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol. Microbiol. 51:1525-1533.
    • (2004) Mol. Microbiol , vol.51 , pp. 1525-1533
    • Valentin-Hansen, P.1    Eriksen, M.2    Udesen, C.3
  • 30
    • 58149139033 scopus 로고    scopus 로고
    • A rough guide to the non-coding RNA world of Salmonella
    • Vogel, J. 2009. A rough guide to the non-coding RNA world of Salmonella. Mol. Microbiol. 71:1-11.
    • (2009) Mol. Microbiol , vol.71 , pp. 1-11
    • Vogel, J.1
  • 31
    • 29044443534 scopus 로고    scopus 로고
    • How to find small non-coding RNAs in bacteria
    • Vogel, J., and C. M. Sharma. 2005. How to find small non-coding RNAs in bacteria. Biol. Chem. 386:1219-1238.
    • (2005) Biol. Chem , vol.386 , pp. 1219-1238
    • Vogel, J.1    Sharma, C.M.2
  • 32
    • 34250709662 scopus 로고    scopus 로고
    • Target identification of small noncoding RNAs in bacteria
    • Vogel, J., and E. G. Wagner. 2007. Target identification of small noncoding RNAs in bacteria. Curr. Opin. Microbiol. 10:262-270.
    • (2007) Curr. Opin. Microbiol , vol.10 , pp. 262-270
    • Vogel, J.1    Wagner, E.G.2
  • 33
    • 0035395606 scopus 로고    scopus 로고
    • Identification of novel small RNAs using comparative genomics and microarrays
    • Wassarman, K. M., F. Repoila, C. Rosenow, G. Storz, and S. Gottesman. 2001. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev. 15:1637-1651.
    • (2001) Genes Dev , vol.15 , pp. 1637-1651
    • Wassarman, K.M.1    Repoila, F.2    Rosenow, C.3    Storz, G.4    Gottesman, S.5
  • 35
    • 0033877257 scopus 로고    scopus 로고
    • AdsA) that is essential for morphological development in Streptomyces griseus
    • AdsA) that is essential for morphological development in Streptomyces griseus. J. Bacteriol. 182:4596-4605.
    • (2000) J. Bacteriol , vol.182 , pp. 4596-4605
    • Yamazaki, H.1    Ohnishi, Y.2    Horinouchi, S.3
  • 36
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.