Temporal genetic heterogeneity of juvenile orange-spotted grouper (Epinephelus coioides, Pisces: Serranidae)

Aquaculture Research

Volumn 40, Issue 10, 2009, Pages 1111-1122

  Pumitinsee, Panuwat ^a   Senanan, Wansuk ^a   Na Nakorn, Uthairat ^b   Kamonrat, Wongpathom ^c   Koedprang, Worawut ^d  

^a BURAPHA UNIVERSITY   (Thailand)

^b KASETSART UNIVERSITY   (Thailand)

^c Thailand Ministry of Agriculture and Cooperatives   (Thailand)

^d RAJAMANGALA UNIVERSITY OF TECHNOLOGY SRIVIJAYA   (Thailand)

Author keywords

Epinephelus coioides; Genetic heterogeneity; Microsatellite markers; Orange spotted grouper

Indexed keywords

AQUACULTURE; BIOMARKER; COASTAL FISHERY; COASTAL WATER; GEOGRAPHICAL VARIATION; HARVESTING; HETEROGENEITY; ISOLATED POPULATION; JUVENILE; MARINE ECOSYSTEM; NURSERY GROUND; POPULATION GENETICS; REPRODUCTIVE SUCCESS; SEAFOOD; SPECIES OCCURRENCE; TEMPORAL VARIATION; TROPICAL ENVIRONMENT;

ANDAMAN SEA; ASIA; EURASIA; INDIAN OCEAN; SOUTHEAST ASIA; SOUTHERN REGION; THAILAND; TRANG;

EPINEPHELUS COIOIDES; PISCES; SERRANIDAE;

EID: 67651236943     PISSN: 1355557X     EISSN: 13652109     Source Type: Journal    
DOI: 10.1111/j.1365-2109.2009.02206.x     Document Type: Article

References (56)

1. Aljanabi S.M. Martinez I. (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acid Research 25, 4692 4693. (Pubitemid 27500787)
2. Antoro S., Na-Nakorn U. Koedprang W. (2006) Study of genetic diversity of orange-spotted grouper, Epinephelus coioides from Thailand and Indonesia using microsatellite markers. Marine Biotechnology 8, 17 26. (Pubitemid 43267222)
3. Cavalli-Sforza L.L.A. Edwards W.F. (1967) Phylogenetic analysis: models and estimation procedures. Evolution 32, 550 570.
4. de Innocentiis S., Sola L., Cataudella S. Bentzen P. (2001) Allozyme and microsatellite loci provide discordant estimates of population differentiation in the endangered species dusky grouper (Epinephelus marginatus) within the Mediterranean Sea. Molecular Ecology 10, 2163 2175. (Pubitemid 32901387)
5. Dieringer D. Schlötterer C. (2003) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes 3, 167 169. (Pubitemid 36374637)
6. Duray M.N., Estudillo C.B. Alpasan L.G. (1997) Larval rearing of the grouper Epinephelus suillus under laboratory conditions. Aquaculture 150, 63 76. (Pubitemid 27307174)
7. Excoffier L. (2001) Analysis of population subdivision. In : Handbook of Statistical Genetics (ed. by D. Balding, M. Bishop C. Cannings pp. 271 308. Wiley, Chichester, UK.
8. Felsenstein J. (1993) PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author Department of Genetics, University of Washington, Seattle.
9. Gillanders B.M., Able K.W., Brown J.A., Eggleston D. Sheridan P. (2003) Evidence of connectivity between juvenile and adult habitats for mobile marine fauna: an important component of nurseries. Marine Ecology Progress Series 247, 281 295. (Pubitemid 36229876)
10. Grandcourt E.M., Al Abdessalaam T.Z., Francis F. Al Shamsi A.T. (2005) Population biology and assessment of the orange-spotted grouper, Epinephelus coioides (Hamilton, 1822), in the southern Arabian Gulf. Fisheries Research 74, 55 68. (Pubitemid 40793653)
11. Guo S.W. Thompson E.A. (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48, 361 372.
12. Hedgecock D. (1995) Temporal and spatial genetic-structure of marine animal populations in the California current. California Cooperative Oceanic Fisheries Investigations Reports 35, 73 81.
13. Heemstra P.C. Randall J.E. (1993) FAO species catalogue. Vol. 16. Groupers of the world (Family Serranidae, Subfamily Epinephelinae). An annotated and illustrated catalogue of the grouper, rockcod, hind, coral grouper and lyretail species known to date. FAO Fisheries Synopsis. No. 125, Vol. 16 FAO, Rome, Italy.
14. Janekarn V. Kiørboe T. (1991) The distribution of fish larvae along the Andaman coast of Thailand. Phuket Marine Biological Center Research Bulletin 56, 41 61.
15. Jørgensen H.B.H., Hansen M.M. Loeschcke V. (2004) Spring-spawning herring (Clupea harengus L.) in the southwestern Baltic Sea: do they form genetically distinct spawning waves? ICES Journal of Marine Science 62, 1065 1075.
16. Khokiattiwong S., Limsaichol P., Petpiroon S., Sojisuporn I. Kjerfve B. (1991) Oceanographic variations in Phanga Bay, Thailand: understanding monsoonal effects. Phuket Marine Biological Center Research Bulletin 55, 43 76.
17. Knutsen H., Jorde P.E., Andre C. Stenseth N.C.H.R. (2003) Fine-scale geographic population structuring in a highly mobile marine species: the Atlantic Cod. Molecular Ecology 12, 385 394. (Pubitemid 36144717)
18. Koedprang W. Ngamsiri T. (2002) Study of Genetic Diversity of Orange-Spotted Grouper (Epinephelus Coioides) in Trang Province Using Isozyme Analysis. Faculty of Science and Fisheries. Rajamangala University of Technology Srivijaya, Trang campus. Sikao, Trang, 21pp.
19. Koedprang W., Na-nakorn U., Nakajima M. Taniguchi N. (2007) Evaluation of genetic diversity of eight grouper species Epinephelus spp. based on microsatellite variations. Fisheries Science 73, 227 236. (Pubitemid 46558212)
20. Konovalov D.A., Manning C. Henshaw M.T. (2004) KINGROUP: a program for pedigree relationship reconstruction and kin group assignments using genetic markers. Molecular Ecology Notes 4, 779 782. (Pubitemid 39569237)
21. Levin P.S. Grimes C.B. (2002) Reef fish ecology and grouper conservation and management. In : Coral Reef Fishes: Dynamics and Diversity in a Complex Ecosystem (ed. by P.F. Sale pp. 377 389. Academic Press, San Diego, CA, USA.
22. Li G. Hedgecock D. (1998) Genetic heterogeneity, detected by PCR-SSCP, among samples of larval pacific oysters (Crassostrea gigas) supports the hypothesis of large variance in reproductive success. Canadian Journal of Fisheries and Aquatic Science 55, 1025 1033. (Pubitemid 28367700)
23. Liao I.C. (2000) The state of finfish diversification in Asian aquaculture. In : Recent advances in Mediterranean aquaculture finfish species diversification. Proceedings of the Seminar of the CIHEAM Network on Technology of Aquaculture in the Mediterranean (TECAM) Zaragoza (Spain), 24-28 May 1999, pp. 109 125. FAO, Rome, Italy.
24. Limpsaichol P. Khokiattiwong S. (1991) Tidal current patterns of the southern Andaman Sea coast of Thailand. Technical Paper No. 1/1991. Phuket Marine Biological Center. 21p.
25. Maes G., Pujola J.M., Hellemans B. Volckaert F.A.M. (2006) Evidence for isolation by time in the European eel (Anguilla anguilla, L.). Molecular Ecology 15, 2095 2107. (Pubitemid 43876454)
26. Mahidol C., Na-Nakorn U., Sukmanomon S., Taniguchi N. Nguyen T.T.T. (2007) Mitochondrial DNA diversity of the Asian moon scallop, Amusium pleuronectes (Pectinidae) in Thailand. Marine Biotechnology 9, 252 259.
27. Manel S., Gaggiotti O.E. Waples R.S. (2005) Assignment methods: matching biological questions with appropriate technique. Trends in Ecology and Evolution 20, 136 142. (Pubitemid 40257094)
28. Marino G., Azzurro E., Massari A., Finola M.G. Mandich A. (2001) Reproduction in the dusky grouper from the southern Mediterranean. Journal of Fish Biology 58, 909 927. (Pubitemid 32546028)
29. Mous P.J., Sadovy Y., Halim A. Pet J.S. (2006) Capture for culture: artificial shelters for grouper collection in SE Asia. Fish and Fisheries 7, 58 72.
30. Nei M. (1987) Molecular Evolutionary Genetics. Columbia University Press, Columbia, NY, 512pp.
31. Nugroho E., Takagi M., Sugama K. Taniguchi N. (1998) Detection of GT repeats microsatellite loci and their polymorphism for grouper of the genus Epinephelus. Fisheries Science 64, 836 837. (Pubitemid 128437633)
32. Page R.D.M. (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357 358.
33. Peakall R. Smouse P.E. (2006) GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288 295. Available from. (Pubitemid 43373825)
34. Planes S. Lenfant P. (2002) Temporal change in the genetic structure between and within cohorts of marine fish, Diplodus sargus, induced by a large variance in individual reproductive success. Molecular Ecology 11, 1515 1524. (Pubitemid 34900295)
35. Planes S., Lecaillon G., Lenfant P. Meekan M. (2002) Genetic and demographic variation in new recruits of Naso unicornis. Journal of Fish Biology 61, 1033 1049. (Pubitemid 35343646)
36. Pujolar J.M., Maes G.E. Volckaert F.A.M. (2006) Genetic patchiness among recruits in the European eel Anguilla anguilla. Marine Ecology Progress Series 307, 209 217. (Pubitemid 43294011)
37. Raymond M. Rousset F. (1995) Genepop (version 1.2), population genetics software for exact tests and ecumenicism. Journal of Heredity 86, 248 249.
38. Rhodes K.L., Lewis R.I., Chapman R.W. Sadovy Y. (2003) Genetic structure of camouflage grouper, Epinephelus polyphekadion (Pisces: Serranidae), in the western central Pacific. Marine Biology 142, 771 776. (Pubitemid 36704451)
39. Rice W.R. (1989) Analyzing table of statistical tests. Evolution 43, 223 225.
40. Rimmer M. (2000) Review of grouper hatchery technology. SPG Live Reef Fish Information Bulletin 1, 14 19.
41. Rivera M.A.J., Graham G.C. Roderick G.K. (2003) Isolation and characterization of nine microsatellite loci from the Hawaiian grouper Epinephelus quernus (Serranidae) for population genetic analyses. Marine Biotechnology 5, 126 129. (Pubitemid 36619159)
42. Sadovy Y. (2000) Regional survey for fry/fingerling supply and current practices for grouper mariculture: evaluating current status and long-term prospects for grouper mariculture in South East Asia. Final report to the Collaboration APEC grouper research and development network (FWG01/99).
43. Sadovy Y. Colin P.L. (1995) Sexual development and sexuality in the Nassau grouper. Journal of Fish Biology 46, 961 976. (Pubitemid 26449891)
44. Selkoe K.A., Gatnes S.D., Caselle J.E. Warner R.R. (2006) Current shifts and kin aggregation explain genetic patchiness in fish recruits. Ecology 87, 3082 3094. (Pubitemid 44969259)
45. Sheaves M. (1995) Large lujanid and serranid fishes in tropical estuaries: are they adults or juveniles. Marine Ecology Progress Series 129, 31 40. (Pubitemid 26454253)
46. Sheriff N. (2004) Fisher livelihoods in southern Thailand: sustainability and the role of grouper culture. PhD dissertation, University of Stirling, UK.
47. Shimada Y., Murakami N., Tsuzaki T. Seikai T. (2007) Changes in growth, higher salinity tolerance and behavioral traits in Japanese flounder Paralichthys olivaceus after repeated cross-breeding. Fisheries Science 73, 364 370. (Pubitemid 46558226)
48. So N., Maes G.E. Volckaert F.A.M. (2006) High genetic diversity in cryptic population of the migratory sutchi catfish Pangasianodon hypophthalmus in the Mekong River. Heredity 96, 166 174. (Pubitemid 43163339)
49. Stevenson D.E., Chapman R.W., Sedberry G.R. Creswell R.L. (1998) Stock identification in Nassau grouper, Epinephelus striatus, using microsatellite DNA analysis. Proceedings of the Gulf and Caribbean Fisheries Institute 50, 727 749.
50. Sudaryanto M.T. Mous P.J. (2004) Natural spawning of three species of grouper in floating cages at a pilot broodstock facility at Komodo, Flores, Indonesia. SPC Live Reef Fish Information Bulletin 12, 21 23.
51. Supungul P., Sootanan P., Klinbunga S., Kamonrat W., Jarayabhand P. Tassanakajon A. (2000) Microsatellite polymorphism and the population structure of the black tiger shrimp (Penaeus monodon) in Thailand. Marine Biotechnology 2, 339 347. (Pubitemid 30681888)
52. Tang S., Tassanakajon A., Klinbunga S., Jarayabhand P. Menasveta P. (2004) Population structure of tropical abalone (Haliotis asinina) in coastal waters of Thailand determined using microsatellite markers. Marine Biotechnology 6, 604 611. (Pubitemid 40747855)
53. van Herwerden L., Choat J.H., Dudgeon C.L., Carlos G., Newman S., Frisch A.J. van Oppen M.J.H. (2006) Contrasting patterns of genetic structure in two species of the coral trout Plectropomus (Serranidae) from east and west Australia: introgressive hybridisation or ancestral polymorphisms. Molecular Phylogenetic and Evolution 41, 420 435. (Pubitemid 44428190)
54. van Oosterhout C., Hutchinson W.F., Wills D.P.M. Shipley P. (2004) Microchecker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4, 535 538. (Pubitemid 39147523)
55. Whiteman E.A., Jennings C.A. Nemeth R.S. (2005) Sex structure and potential female fecundity in a Epinephelus guttatus spawning aggregation: applying ultrasonic imaging. Journal of Fish Biology 66, 983 995. (Pubitemid 40526600)
56. Zatcoff M.S., Ball A.O. Sedberry G.R. (2004) Population genetic analysis of red grouper, Epinephelus morio, and scamp, Mycteroperca phenax, from the Southeastern U.S. Atlantic and Gulf of Mexico. Marine Biology 144, 769 777. (Pubitemid 38554847)