Population genetic analysis of red grouper, Epinephelus morio, and scamp, Mycteroperca phenax, from the southeastern U.S. Atlantic and Gulf of Mexico

Marine Biology

Volumn 144, Issue 4, 2004, Pages 769-777

  Zatcoff, M S ^a,c   Ball, A O ^b   Sedberry, G R ^b  

^a School of Business   (United States)

^b MARINE RESOURCES RESEARCH INSTITUTE   (United States)

^c NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FISH; GENETIC VARIATION; HOMOGENEITY; POPULATION GENETICS; POPULATION STRUCTURE;

ATLANTIC COAST [UNITED STATES]; ATLANTIC OCEAN; GULF OF MEXICO; NORTH AMERICA; UNITED STATES;

EPINEPHELUS; EPINEPHELUS MORIO; MYCTEROPERCA; MYCTEROPERCA PHENAX;

EID: 2342440409     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-003-1236-z     Document Type: Article

References (50)

1. Ausubel FM (1995) Current protocols in molecular biology. Wiley, New York
2. Bagley MJ, Lindquist DG, Geller JB (1999) Microsatellite variation, effective population size, and population genetic structure of vermilion snapper, Rhomboplites aurorubens, off the southeastern USA. Mar Biol 134:609-620
3. Brookfield JFY (1996) A simple new method for estimating null allele frequency from heterozygote deficiency. Mol Ecol 5:453-455
4. Brulé T, Déniel C (1996) Biological research on the red grouper (Epinephelus morio) from the southern Gulf of Mexico. In: Arreguín-Sánchez F, Munro JL, Balgos MC, Pauly D (eds) Biology, fisheries and culture of tropical groupers and snappers. Conference proceedings 48, ICLARM (International Center for Living Aquatic Resources Management), Manila, pp 28-42
5. Bullock L, Smith G (1991) Seabasses (Pisces: Serranidae). Mem Hourglass Cruises 8:1-243
6. Chapman RW, Sedberry GR, Koenig CC, Eleby BM (1999) Stock identification of gag, Mycteroperca microlepis, along the southeast coast of the United States. Mar Biotechnol 1:137-146
7. Chapman RW, Sedberry GR, McGovern JC, Ball AO, Zatcoff MS (2002) Genetic identification of scamp, Mycteroperca phenax, black grouper, Mycteroperca bonaci, and red grouper, Epinephelus morio, in the Western Atlantic. South Carolina Department of Natural Resources, Charleston, S.C.
8. CLIMAP (1976) The surface of the ice-age earth. Science 191:1131-1137
9. Coleman FC, Koenig CC, Collins LA (1996) Reproductive styles of shallow-water groupers (Pisces: Serranidae) in the eastern Gulf of Mexico and the consequences of fishing spawning aggregations. Environ Biol Fishes 47:129-141
10. Coleman FC, Koenig CC, Huntsman GR, Musick JA, Eklund AM, McGovern JC, Chapman RW, Sedberry GR, Grimes CB (2000) Long-lived reef fishes: the grouper-snapper complex. Fisheries (Bethesda) 25:14-21
11. Eklund A-M, McClellan DB, Harper DE (2000) Black grouper aggregations in relation to protected areas within the Florida Keys National Marine Sanctuary. Bull Mar Sci 66:721-728
12. Gilmore RG, Jones RS (1992) Color variation and associated behavior in the epinepheline groupers, Mycteroperca microlepis (Goode and Bean) and M. phenax Jordan and Swain. Bull Mar Sci 51:83-103
13. Gold JR, Richardson LR (1998) Mitochondrial DNA diversification and population structure in fishes from the Gulf of Mexico and Western Atlantic. J Hered 89:404-414
14. Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW (1995) Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci USA 92:6723-6727
15. Goudet J (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. J Hered 86:485-486
16. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361-372
17. Harris PJ, Wyanski DM, White DB, Moore JL (2002) Age, growth, and reproduction of scamp, Mycteroperca phenax, in the southwestern North Atlantic, 1979-1997. Bull Mar Sci 70:113-132
18. Hauser L, Ward RD (1998) Population identification in pelagic fish: the limits of molecular markers. In: Carvalho GR (ed) Advances in molecular ecology. NATO advanced science institutes series, series A. Life sciences. IOS Press, Amsterdam, pp 191-224
19. Hauser L, Adcock GJ, Smith PJ, Ramirez JHB, Carvalho GR (2002) Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus). Proc Natl Acad Sci USA 99:11742-11747
20. Heemstra PC, Randall JE (1993) FAO species catalogue, vol 16. Groupers of the world (family Serranidae, subfamily Epinephelinae). An annotated and illustrated catalogue of the grouper, rockcod, hind, coral grouper and lyretail species known to date. FAO, Rome
21. Jones GP, Millicich MJ, Emslie MJ, Lunow C (1999) Self-recruitment in a coral reef fish population. Nature 402:802-804
22. Law R (2000) Fishing, selection, and phenotypic evolution. ICES J Mar Sci 57:659-668
23. Lindeman KC, Pugliese R, Waugh GT, Ault JS (2000) Developmental patterns within a multispecies reef fishery: management applications for essential fish habitats and protected areas. Bull Mar Sci 66:929-956
24. Manooch CS III, Potts JC, Burton ML, Harris PJ (1998) Population assessment of the scamp, Mycteroperca phenax, from the southeastern United States. NOAA Tech Mem NMFS-SEFC 410
25. Michalakis Y, Excoffier L (1996) A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics 142:1061-1064
26. Moe MA Jr (1969) Biology of the red grouper Epinephelus morio (Valenciennes) from the eastern Gulf of Mexico. Fla Dep Nat Resour Mar Res Lab Prof Pap Ser 10:1-95
27. Molinari RL, Atwood DK, Duckett C, Spillane M, Brooks I (1980) Surface currents in the Caribbean Sea as deduced from satellite tracked drifting buoys. Proc Gulf Caribb Fish Inst 32:106-113
28. Musick JA (1999) Ecology and conservation of long-lived marine animals. Am Fish Soc Symp 23:1-10
29. Nei M (1972) Genetic distance between populations. Am Nat 106:283-292
30. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
31. Nei M, Maruyama T, Chakraborty R (1975) The bottleneck effect and genetic variability in populations. Evolution 29:1-10
32. NMFS (National Marine Fisheries Service) (2002a) Annual report to Congress on the status of U.S. fisheries - 2001. U.S. Dept. Commerce, NOAA, Natl. Mar. Fish. Serv., Silver Springs, M.D.
33. NMFS (National Marine Fisheries Service) (2002b) Secretarial Amendment 1 to the reef fish fishery management plan to set a 10-year rebuilding plan for red grouper, with associated impacts on gag and other groupers and draft supplemental environmental impact statement. Final draft - September 2002. National Marine Fisheries Service, Southeast Regional Office, St. Petersburg, Fla.
34. Petuch FJ (1997) Coastal paleoceanography of eastern North America (Miocene-Pleistocene). Kendall/Hunt Publishing, Iowa
35. Raymond M, Rousset F (1995) GENEPOP (ver. 1.2): population genetics software for exact tests and ecumenicism. J Hered 86:248-249
36. Rezak R, Bright TJ, McGrail DW (1985) Reefs and banks of the northwestern Gulf of Mexico: their geological, biological, and physical dynamics. Wiley, New York
37. Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223-225
38. Richardson LR, Gold JR (1997) Mitochondrial DNA diversity in and population structure of red grouper, Epinephelus morio, from the Gulf of Mexico. Fish Bull (Wash DC) 95:174-179
39. Rousset F, Raymond M (1995) Testing heterozygote excess and deficiency. Genetics 140:1413-1419
40. Ruzzante DE (1998) A comparison of several measures of genetic distance and population structure with microsatellite data: bias and sampling variance. Can J Fish Aquat Sci 55:1-14
41. Sadovy Y (2001) The threat of fishing to highly fecund fishes. J Fish Biol 59[Suppl A]:90-108
42. Schirripa MJ, Legault CM, Ortiz M (1999) The red grouper fishery of the Gulf of Mexico: assessment 3.0. Sustainable Fisheries Division contribution no. SFD-98/99-56, Southeast Fisheries Science Center, Sustainable Fisheries Division, 75 Virginia Beach Drive, Miami, FL 33149-1099, USA
43. Schneider S, Roessli D, Excoffier L (2000) Arlequin: a software for population genetics data analysis, ver 2.000. Genetics and Biometry Lab, Dept. of Anthropology, University of Geneva, Geneva
44. Shaklee JB, Bentzen P (1998) Genetic identification of stocks of marine fish and shellfish. Bull Mar Sci 62:589-621
45. Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457-462
46. Swearer SE, Caselle JE, Lea DW, Warner RR (1999) Larval retention and recruitment in an island population of a coral-reef fish. Nature 402:799-802
47. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
48. Wright S (1951) The genetical structure of populations. Ann Eugen 15:323-354
49. Zatcoff MS (2001) Population genetic analysis of black grouper, Mycteroperca bonaci, and red grouper, Epinephelus morio (Teleostei: Serranidae), in the western Atlantic, Gulf of Mexico, and Caribbean using microsatellite DNA markers. Master's thesis. Dept. Biology, Charleston, S.C.
50. Zatcoff MS, Ball AO, Chapman RW (2002) Characterization of polymorphic microsatellite loci from black grouper, Mycteroperca bonaci (Teleostei: Serranidae). Mol Ecol Notes 2:217-219