Population structure of tropical abalone (Haliotis asinina) in coastal waters of Thailand determined using microsatellite markers

Marine Biotechnology

Volumn 6, Issue 6, 2004, Pages 604-611

  Tang, S ^a   Tassanakajon, A ^a   Klinbunga, S ^b   Jarayabhand, P ^a   Menasveta, P ^a,b  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

Abalone; Genetic diversity; Haliotis asinina; Microsatellites; Population differentiation

Indexed keywords

COASTAL ZONES; DNA; ENZYMES;

GENETIC DIVERSITY; GENOME LIBRARIES; HETEROZYGOSITY; TROPICAL ABALONE;

CLONING;

MICROSATELLITE DNA; PRIMER DNA;

GASTROPOD; GENETIC VARIATION; POPULATION STRUCTURE;

ANIMAL; ARTICLE; COMPARATIVE STUDY; DNA SEQUENCE; GENE FREQUENCY; GENE LIBRARY; GENETIC VARIABILITY; GENETICS; MOLLUSC; POPULATION GENETICS; THAILAND; TROPIC CLIMATE;

ANIMALS; DNA PRIMERS; GENE FREQUENCY; GENE LIBRARY; GENETICS, POPULATION; MICROSATELLITE REPEATS; MOLLUSCA; SEQUENCE ANALYSIS, DNA; THAILAND; TROPICAL CLIMATE; VARIATION (GENETICS);

GULF OF THAILAND; OCEANIC REGIONS; PACIFIC OCEAN; SOUTH CHINA SEA; WORLD;

HALIOTIS ASININA; HALIOTIS CORRUGATA;

EID: 19944362201     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-004-2300-5     Document Type: Article

References (33)

1. J. Altschmied U. Hornung I. Schlupp J. Gadau R. Kolb M. Schartl 1997 Isolation of DNA suitable for PCR for field and laboratory work Bio techniques 23 228 229
2. L.L. Cavalli-Sforza A.W.F. Edwards 1967 Phylogenetic analysis: models and estimation procedures Evolution 21 550 570
3. J.F. Crow M. Kimura 1965 Evolution in sexual and a sexual populations Am Nat 99 439 450
4. L.G. Davis M.D. Dibner J.F. Battey 1986 Preparation of genomic DNA. Basic Method in Molecular Biology Elsevier Science New York, N.Y 42 43
5. W.J. Dower J.F. Miller C.W. Ragsdale 1988 High efficiency transformation of E. coli by high voltage electroporation Nucleic Acids Res 16 612 617
6. B. Evans N. Conod N.G. Elliott 2001 Evaluation of microsatellite primer conservation in abalone J Shellfish Res 20 1065 1070
7. J. Felsenstein 1993 Phylip (Phylogeny Inference Package Version 3.5c) Distributed by the author. Department of Genetics, University of Washington Seattle
8. D.L. Geiger 2000 Distribution and biogeography of the Haliotidae (Gastropoda: Vetigastropod) world-wide Boll Malacologico 35 57 120
9. th International Abalone Symposium, Cape Town, South Africa. University of Cape Town, February 6-11, 2000
10. S.W. Guo E.A. Thompson 1992 Performing the extract test of Hardy-Weinberg proportion for multiple alleles Biometrics 48 361 372
11. M. Grunstein D.S. Hogness 1975 Colony hybridisation: a method for the isolation of cloned DNAs which contain a specific gene Proc Natl Acad Sci U S A 72 3961
12. D.S. Holmes M. Quigley 1981 A rapid boiling method for the preparation of bacterial plasmids Anal Biochem 114 193 197
13. B.X. Huang P.J. Hanna 1998 Identification of three polymorphic microsatellite loci in blacklip abalone, Haliotis rubra (Leach), and detection in other abalone species J Shellfish Res 17 795 799
14. B.X. Huang R. Peakall P.J. Hanna 2000 Analysis of genetic structure of blackip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers Mar Biol 136 207 216
15. P. Jarayabhand N. Paphavasit 1996 A review of the culture of tropical abalone with special reference to Thailand Aquaculture 140 159 168
16. V.L. Kirby D.A. Powers 1998 Identification of microsatellites in the California red abalone, Haliotis rufescens J Shellfish Res 17 801 804
17. S. Klinbunga P. Pripue N. Khamnamtong N. Puanglarp A. Tassanakajon P. Jarayabhand P. Menasveta 2003 Genetic diversity and molecular markers of the tropical abalone (Haliotis asinina) in Thailand Mar Biotechnol 5 505 517
18. T. Maniatis E.F. Fritsch J. Sambrook 1982 Molecular Cloning: A Laboratory Manual Cold Spring Habor Laboratory Cold Spring Harbor, N.Y
19. K.M. Miller K. Laberee K.H. Kaukinen S. Li R.E. Withler 2001 Development of microsatellite loci in pinto abalone (Haliotis kamtschatkana) Mol Ecol Notes 1 315 317
20. M. Nei 1987 Molecular Evolutionary Genetics Columbia University Press New York, N.Y
21. L. Pepin Y. Amigues A. Lepingel J.L. Berthier A. Bensaid D. Vaiman 1995 Sequence conservation of microsatellites between Bos taurus (cattle), Capra hircus (goat) and related species: examples of use in parentage testing and phylogeny analysis Heredity 74 53 61
22. A. Popongviwat 2001 Genetic Diversity of Tropical Abalone in Thailand Using RAPD-PCR M.Sc. thesis, Chulalongkorn University Bangkok, Thailand
23. M. Raymond F. Rousset 1995 GENEPOP (Version 1.2): a population reconstructing phylogenic trees Mol Biol Evol 4 406 425
24. F. Rousset M. Raymond 1995 Testing heterozygote excess and deficiency Genetics 140 1413 1419
25. W.R. Rice 1989 Analyzing tables of statistical tests Evolution 43 223 225
26. M. Sekino M. Hara 2001 Microsatellite DNA loci in Pacific abalone Haliotis discus discus (Mollusca, Gastropoda, Haliotidae) Mol Ecol Notes 1 8 10
27. M.J.P. Selvamani S.M. Degnan D. Paetkau B.M. Degnan 2000 Highly polymorphic microsatellite loci in the Heron Reef population of the tropical abalone Haliotis asinina Mol Ecol 9 1184 1186
28. P. Supungul P. Sootanan S. Klinbunga W. Kamonrat P. Jarayabhand A. Tassanakajon 2000 Microsatellite polymorphism and the population structure of the black tiger shrimp (Penaeus monodon) in Thailand Mar Biotechnol 2 339 347
29. P.S. Walsh D.A. Metzger R. Higuchi 1991 Chelex 100 as medium for simple extraction of DNA for PCR-based typing from forensic material Biotechniques 10 506 513
30. J.L. Weber 1990 Informativeness of human (dC-dA)n and (dG-dT)n polymorphism Genomics 7 524 530
31. B.S. Weir C.C. Cockerham 1984 Estimation F-statistics for the analysis of population structure Evolution 38 1358 1370
32. J.M. Wright P. Bentzen 1994 Microsatellites: genetic markers for the future Rev Fish Biol Fish 4 384 388
33. C. Yanisch-Perron J. Vieira J. Messing 1985 Improve M13 phage cloning vectors and host strains: nucleotide sequences of the M13 mp18 and pUC19 Gene 33 103 119