-
1
-
-
27644475451
-
Optimized between-group classification: A new jackknife-based gene selection procedure for genome-wide expression data
-
Baty, F., Bihl, M.P., Perriere, G., Culhane, A.C., and Brutsche, M.H. (2005). Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data. BMC Bioinformatics 28, 239.
-
(2005)
BMC Bioinformatics
, vol.28
, pp. 239
-
-
Baty, F.1
Bihl, M.P.2
Perriere, G.3
Culhane, A.C.4
Brutsche, M.H.5
-
2
-
-
0033692876
-
Tissue classification with gene expression profiles
-
Ben-Dor, A., Bruhn, L., Friedman, N., Nachman, I., Schummer, M., and Yakhini, Z. (2000). Tissue classification with gene expression profiles. J Comput Biol 7, 559-583.
-
(2000)
J Comput Biol
, vol.7
, pp. 559-583
-
-
Ben-Dor, A.1
Bruhn, L.2
Friedman, N.3
Nachman, I.4
Schummer, M.5
Yakhini, Z.6
-
3
-
-
12244291885
-
Gene expression profiling in dysferlinopathies using a dedicated muscle microarray
-
Campanaro, S., Romualdi, C., Fanin, M., Celegato, B., Pacchioni, B., Trevisan, S., et al. (2002). Gene expression profiling in dysferlinopathies using a dedicated muscle microarray. Hum Mol Genet 11, 3283-3298
-
(2002)
Hum Mol Genet
, vol.11
, pp. 3283-3298
-
-
Campanaro, S.1
Romualdi, C.2
Fanin, M.3
Celegato, B.4
Pacchioni, B.5
Trevisan, S.6
-
4
-
-
33749605124
-
Parallel protein and transcript profiles of FSHD patient muscles correlate to the D4Z4 arrangement and reveal a common impairment of slow to fast fibre differentiation and a general deregulation of MyoD-dependent genes
-
Celegato, B., Capitanio, D., Pescatori, M., Romualdi, C., Pacchioni, B., Cagnin, S., et al. (2006). Parallel protein and transcript profiles of FSHD patient muscles correlate to the D4Z4 arrangement and reveal a common impairment of slow to fast fibre differentiation and a general deregulation of MyoD-dependent genes. Proteomics 6, 5303-5321.
-
(2006)
Proteomics
, vol.6
, pp. 5303-5321
-
-
Celegato, B.1
Capitanio, D.2
Pescatori, M.3
Romualdi, C.4
Pacchioni, B.5
Cagnin, S.6
-
5
-
-
0040171948
-
Homals and princals. Some generalizations of principal components analysis
-
Diday et al, eds, North Holland, Amsterdam, pp
-
De Leeuw, J., and Van Rijckevorsel, J. (1980). Homals and princals. Some generalizations of principal components analysis. In Data Analysis and Informatics II, Diday et al., eds., (North Holland, Amsterdam). pp. 231-242.
-
(1980)
Data Analysis and Informatics II
, pp. 231-242
-
-
De Leeuw, J.1
Van Rijckevorsel, J.2
-
6
-
-
0038005018
-
DAVID: Database for annotation, visualization and integrated discovery
-
Dennis, G., Sherman, B.T., Hosack, D.A., Yang, J., Gao, W., Lane, H.C., et al. (2003). DAVID: database for annotation, visualization and integrated discovery. Genome Biol 4, P3.
-
(2003)
Genome Biol
, vol.4
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
-
7
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumours by using gene expression data
-
Dudoit, S., Fridlyand, J., and Speed, T. (2000). Comparison of discrimination methods for the classification of tumours by using gene expression data. J Am Stat Assoc 97, 77-87.
-
(2000)
J Am Stat Assoc
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.3
-
8
-
-
13844254314
-
Computing aspects of power for multiple regression
-
Dunlap, W.P., Xin, X., and Myers, L. (2004). Computing aspects of power for multiple regression. Behav Res Methods, Instrum Comput 36, 695-701.
-
(2004)
Behav Res Methods, Instrum Comput
, vol.36
, pp. 695-701
-
-
Dunlap, W.P.1
Xin, X.2
Myers, L.3
-
9
-
-
0032441150
-
Cluster analysis and display of genome-wide expression pattern
-
Eisen, M.B., Spellman, P.T., Brown, P.O., and Botstein., D. (1998). Cluster analysis and display of genome-wide expression pattern. Proc Natl Acad Sci USA 95, 14863-14868.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
11
-
-
14644433026
-
A semiparametric approach for marker gene selection based on gene expression data
-
Guan, Z., and Zhao, H. (2005). A semiparametric approach for marker gene selection based on gene expression data. Bioinformatics. 21, 529-536.
-
(2005)
Bioinformatics
, vol.21
, pp. 529-536
-
-
Guan, Z.1
Zhao, H.2
-
12
-
-
21444446838
-
Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data
-
Gui, J., and Li, H. (2005). Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data. Bioinformatics 21, 3001-3008.
-
(2005)
Bioinformatics
, vol.21
, pp. 3001-3008
-
-
Gui, J.1
Li, H.2
-
13
-
-
34548009359
-
Dysferlin and muscle membrane repair
-
Han, R., and Campbell, KP (2007). Dysferlin and muscle membrane repair. Curr Opin Cell Biol 19, 409-416.
-
(2007)
Curr Opin Cell Biol
, vol.19
, pp. 409-416
-
-
Han, R.1
Campbell, K.P.2
-
14
-
-
0344319833
-
Identifying biological themes within lists of genes with EASE
-
Hosack, D.A., Dennis, G. J.R., Sherman, B.T., Lane, H.C., and Lempicki, R.A. (2003). Identifying biological themes within lists of genes with EASE. Genome Biol 4, P4.
-
(2003)
Genome Biol
, vol.4
-
-
Hosack, D.A.1
Dennis, G.J.R.2
Sherman, B.T.3
Lane, H.C.4
Lempicki, R.A.5
-
15
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan, J., Wei, J.S., Ringner, M., Saal, L.H., Ladanyi, M., Westermann, F., et al. (2001). Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat Med 7, 673-679.
-
(2001)
Nat Med
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
-
16
-
-
12744266814
-
Partial Cox regression analysis for highdimensional microarray gene expression data
-
Li, H., and Gui, J. (2004). Partial Cox regression analysis for highdimensional microarray gene expression data. Bioinformatics 20(Suppl. 1), I208-I215.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Li, H.1
Gui, J.2
-
17
-
-
0036139278
-
Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method
-
Li, L., Weinberg, C.R., Darden, T.A., and Pedersen, L.G. (2001). Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method. Bioinformatics 17, 1131-1142.
-
(2001)
Bioinformatics
, vol.17
, pp. 1131-1142
-
-
Li, L.1
Weinberg, C.R.2
Darden, T.A.3
Pedersen, L.G.4
-
18
-
-
33749354868
-
Expression profiling characterization of laminin alpha-2 positive MDC
-
Millino, C., Bellin, M., Fanin, M., Romualdi, C., Pegoraro, E., Angelini, C., et al. (2006). Expression profiling characterization of laminin alpha-2 positive MDC. Biochem Biophys Res Commun 350, 345-351.
-
(2006)
Biochem Biophys Res Commun
, vol.350
, pp. 345-351
-
-
Millino, C.1
Bellin, M.2
Fanin, M.3
Romualdi, C.4
Pegoraro, E.5
Angelini, C.6
-
19
-
-
0036956225
-
Partial least squares pro- portional hazard regression for application to DNA microarray survival data
-
Nguyen, D.V., and Rocke, D.M. (2002). Partial least squares pro- portional hazard regression for application to DNA microarray survival data. Bioinformatics 18, 1625-1632.
-
(2002)
Bioinformatics
, vol.18
, pp. 1625-1632
-
-
Nguyen, D.V.1
Rocke, D.M.2
-
20
-
-
0036372266
-
Model-based cluster analysis of microarray gene-expression data
-
RESEARCH0009
-
Pan, W., Lin, J., and Le, C.T. (2002). Model-based cluster analysis of microarray gene-expression data. Genome Biol 3, RESEARCH0009.
-
(2002)
Genome Biol
, vol.3
-
-
Pan, W.1
Lin, J.2
Le, C.T.3
-
21
-
-
0037047161
-
Cluster analysis of gene expression dynamics
-
Ramoni, M.F., Sebastiani, P., and Kohane, I.S. (2002). Cluster analysis of gene expression dynamics. Proc Natl Acad Sci USA 99, 9121-9126.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 9121-9126
-
-
Ramoni, M.F.1
Sebastiani, P.2
Kohane, I.S.3
-
22
-
-
0037447386
-
Pattern recognition in gene expression profiling using DNA array: A comparative study of different statistical methods applied to cancer classification
-
Romualdi, C., Campanaro, S., Campagna, D., Celegato, B., Cannata, N., Toppo, S., et al. (2003), Pattern recognition in gene expression profiling using DNA array: a comparative study of different statistical methods applied to cancer classification. Hum Mol Genet 12, 823-836.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 823-836
-
-
Romualdi, C.1
Campanaro, S.2
Campagna, D.3
Celegato, B.4
Cannata, N.5
Toppo, S.6
-
23
-
-
23144442350
-
MIDAW: A web tool for statistical analysis of microarray data
-
Romualdi, C., Vitulo, N., Del Favero, M., Lanfranchi, G. (2005). MIDAW: a web tool for statistical analysis of microarray data. Nucleic Acids Res 33, W644-W649.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Romualdi, C.1
Vitulo, N.2
Del Favero, M.3
Lanfranchi, G.4
-
24
-
-
0034050902
-
Systematic variation in gene expression patterns in human cancer cell lines
-
Ross, D.T., Scherf, U., Eisen, M.B., Perou, C.M., Rees, C., Spellman, P., et al. (2000). Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet 24, 227-235.
-
(2000)
Nat Genet
, vol.24
, pp. 227-235
-
-
Ross, D.T.1
Scherf, U.2
Eisen, M.B.3
Perou, C.M.4
Rees, C.5
Spellman, P.6
-
25
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R.W., and Brown, P.O. (1995). Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
26
-
-
18244409933
-
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
-
Shipp, M.A., Ross, K.N., Tamayo, P., Weng, A.P., Kutok, J.L., Aguiar, R.C., et al. (2002). Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat Med 8, 68-74.
-
(2002)
Nat Med
, vol.8
, pp. 68-74
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
Weng, A.P.4
Kutok, J.L.5
Aguiar, R.C.6
-
27
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey, J.D. (2002). A direct approach to false discovery rates J R Stat Soc B 64, 479-498.
-
(2002)
J R Stat Soc B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
28
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps, methods and application to hematopoietic differentiation
-
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., et al. (1999). Interpreting patterns of gene expression with self-organizing maps, methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA 96, 2907-2912.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
-
29
-
-
13744261323
-
Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data
-
Tan, Y., Shi, L., Tong, W., and Wang, C. (2005). Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data. Nucleic Acids Res 33, 56-65.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 56-65
-
-
Tan, Y.1
Shi, L.2
Tong, W.3
Wang, C.4
-
30
-
-
33645157313
-
Gene selection algorithms for microarray data based on least squares support vector machine
-
Tang, E.K., Suganthan, P.N., and Yao, X. (2006). Gene selection algorithms for microarray data based on least squares support vector machine. BMC Bioinformatics 27, 95.
-
(2006)
BMC Bioinformatics
, vol.27
, pp. 95
-
-
Tang, E.K.1
Suganthan, P.N.2
Yao, X.3
-
31
-
-
21444450507
-
A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data
-
Teschendorff, A.E., Wang, Y., Barbosa-Morais, N.L., Brenton, J.D., and Caldas, C. (2005). A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data. Bioinformatics 21, 3025-3033.
-
(2005)
Bioinformatics
, vol.21
, pp. 3025-3033
-
-
Teschendorff, A.E.1
Wang, Y.2
Barbosa-Morais, N.L.3
Brenton, J.D.4
Caldas, C.5
-
32
-
-
0018709674
-
Chance factors in studies of quantitative structure-activity relationships
-
Topliss, J.G., and Edwards, R.P. (1979). Chance factors in studies of quantitative structure-activity relationships. J Med Chem 22, 1238-1244.
-
(1979)
J Med Chem
, vol.22
, pp. 1238-1244
-
-
Topliss, J.G.1
Edwards, R.P.2
-
33
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V.G., Tibshirani, R., and Chu, G. (2001). Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98, 5116-5121.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
34
-
-
33748631068
-
Cross-validated Cox regression on microarray gene expression data
-
Van Houwelingen, H.C., Bruinsma, T., Hart, A.A., Van't Veer, L.J., and Wessels, L.F. (2006). Cross-validated Cox regression on microarray gene expression data. Stat Med 25, 3201- 3216.
-
(2006)
Stat Med
, vol.25
, pp. 3201-3216
-
-
Van Houwelingen, H.C.1
Bruinsma, T.2
Hart, A.A.3
Van't Veer, L.J.4
Wessels, L.F.5
-
35
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
Van't Veer, L.J., Dai, H., Van de Vijver, M.J., He, Y.D., Hart, A.A.M., Mao, M., et al. (2002). Gene expression profiling predicts clinical outcome of breast cancer. Nature 415, 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
Van't Veer, L.J.1
Dai, H.2
Van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.M.5
Mao, M.6
-
36
-
-
21244444543
-
Gene selection for microarray data analysis using principal component analysis
-
Wang, A., and Gehan, E.A. (2005). Gene selection for microarray data analysis using principal component analysis. Stat Med 24, 2069-2087.
-
(2005)
Stat Med
, vol.24
, pp. 2069-2087
-
-
Wang, A.1
Gehan, E.A.2
-
37
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J., et al. (2002). Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30, e15.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
|