Genetic variation at the TNF-α promoter and malaria susceptibility in rhesus (Macaca mulatta) and long-tailed (Macaca fascicularis) macaques

Infection, Genetics and Evolution

Volumn 9, Issue 5, 2009, Pages 769-777

  Flynn, Shannon ^a,b   Satkoski, Jessica ^a   Lerche, Nicholas ^b   Kanthaswamy, Sreetharan ^a,b   Smith, David Glenn ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Macaques; Malaria; Polymorphisms; Promoter; Tumor necrosis factor alpha

Indexed keywords

TUMOR NECROSIS FACTOR ALPHA;

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC SUSCEPTIBILITY; GENETIC VARIABILITY; HAPLOTYPE; INFECTION SENSITIVITY; MACACA; MALARIA; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PLASMODIUM; PRIORITY JOURNAL; PROMOTER REGION; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIFFERENTIATION;

ANALYSIS OF VARIANCE; ANIMALS; DNA MUTATIONAL ANALYSIS; GENE FREQUENCY; GENETIC PREDISPOSITION TO DISEASE; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MACACA FASCICULARIS; MACACA MULATTA; MALARIA; MOLECULAR SEQUENCE DATA; PLASMODIUM; POLYMORPHISM, SINGLE NUCLEOTIDE; PROMOTER REGIONS, GENETIC; TUMOR NECROSIS FACTOR-ALPHA;

MACACA; MACACA FASCICULARIS; MACACA MULATTA; PLASMODIUM PARASITES;

EID: 67651115796     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2009.03.011     Document Type: Article

References (43)

1. Abraham L.J., and Kroeger K.M. Impact of the -308 TNF promoter polymorphism on the transcriptional regulation of the TNF gene: relevance to disease. J. Leukoc. Biol. 66 (1999) 562-566
2. Aidoo M., McElroy P.D., Kolczak M.S., Terlouw D.J., ter Kuile F.O., Nahlen B., Lal A.A., and Udhayakumar V. Tumor necrosis factor-alpha promoter variant 2 (TNF2) is associated with pre-term delivery, infant mortality, and malaria morbidity in western Kenya: Asembo Bay Cohort Project IX. Genet. Epidemiol. 21 (2001) 201-211
3. Akiyama, Y., 1998. TFSEARCH: Searching Transcription Factor Binding Sites.
4. Baseggio L., Bartholin L., Chantome A., Charlot C., Rimokh R., and Salles G. Allele-specific binding to the -308 single nucleotide polymorphism site in the tumour necrosis factor-alpha promoter. Eur. J. Immunogenet. 31 (2004) 15-19
5. Bayley J.P., Ottenhoff T.H., and Verweij C.L. Is there a future for TNF promoter polymorphisms?. Genes Immun. 5 (2004) 315-329
6. Bel Hadj Jrad B., Chatti A., Laatiri A., Ahmed S.B., Romdhane A., Ajimi S., and Chouchane L. Tumor necrosis factor promoter gene polymorphism associated with increased susceptibility to non-Hodgkin's lymphomas. Eur. J. Haematol. 78 (2007) 117-122
7. Collins W.E. Primate malarias. Adv. Vet. Sci. Comp. Med. 18 (1974) 1-23
8. Collins W.E., Skinner J.C., Broderson J.R., Filipski V.K., Morris C.M., Stanfill P.S., and Warren M. Susceptibility of Macaca fascicularis monkeys from Mauritius to different species of Plasmodium. J. Parasitol. 78 (1992) 505-511
9. El-Harith el H.A. The cytokine TNF-alpha. Genetics and suitability for prenatal risks assessment. Saudi Med. J. 25 (2004) 135-140
10. Excoffier L., Laval G., and Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolut. Bioinformat. Online 1 (2005) 47-50
11. Fooden J. Classification and distribution of living macaques (Macaca Lacapede, 1799). In: Lindburg D. (Ed). The Macaques: Studies in Ecology, Behavior and Evolution (1980), Van Nostrand Reinhold, New York 1-9
12. Fooden J. Malaria in Macaques. Int. J. Primatol. 15 (1994) 573-596
13. Gaudet M.M., Egan K.M., Lissowska J., Newcomb P.A., Brinton L.A., Titus-Ernstoff L., Yeager M., Chanock S., Welch R., Peplonska B., Trentham-Dietz A., and Garcia-Closas M. Genetic variation in tumor necrosis factor and lymphotoxin-alpha (TNF-LTA) and breast cancer risk. Hum. Genet. 121 (2007) 483-490
14. Hajeer A.H., and Hutchinson I.V. Influence of TNFalpha gene polymorphisms on TNFalpha production and disease. Hum. Immunol. 62 (2001) 1191-1199
15. Hananantachai H., Patarapotikul J., Ohashi J., Naka I., Krudsood S., Looareesuwan S., and Tokunaga K. Significant association between TNF-alpha (TNF) promoter allele (-1031C, -863C, and -857C) and cerebral malaria in Thailand. Tissue Antigens 69 (2007) 277-280
16. Hayasaka K., Fujii K., and Horai S. Molecular phylogeny of macaques: implications of nucleotide sequences from an 896-base pair region of mitochondrial DNA. Mol. Biol. Evol. 13 (1996) 1044-1053
17. Hayasaka K., Horai S., Gojobori T., Shotake T., Nozawa K., and Matsunaga E. Phylogenetic relationships among Japanese, rhesus, Formosan, and crab-eating monkeys, inferred from restriction-enzyme analysis of mitochondrial DNAs. Mol. Biol. Evol. 5 (1988) 270-281
18. Heinemeyer T., Wingender E., Reuter I., Hermjakob H., Kel A.E., Kel O.V., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Kolpakov F.A., Podkolodny N.L., and Kolchanov N.A. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res. 26 (1998) 362-367
19. Hirankarn N., Avihingsanon Y., and Wongpiyabovorn J. Genetic susceptibility to SLE is associated with TNF-alpha gene polymorphism -863, but not -308 and -238, in Thai population. Int. J. Immunogenet. 34 (2007) 425-430
20. Hohjoh H., and Tokunaga K. Allele-specific binding of the ubiquitous transcription factor OCT-1 to the functional single nucleotide polymorphism (SNP) sites in the tumor necrosis factor-alpha gene (TNFA) promoter. Genes Immun. 2 (2001) 105-109
21. Kanthaswamy S., Satkoski J., George D., Kou A., Erickson B.J., and Smith D.G. Interspecies hybridization and the stratification of nuclear genetic variation of rhesus (Macaca mulatta) and long-tailed macaques(Macaca fascicularis). Int. J. Primatol. 29 (2008) 1295-1311
22. Kawamoto Y., Kawamoto S., Matsubayashi K., Nozawa K., Watanabe T., Stanley M.A., and Perwitasari-Farajallah D. Genetic diversity of longtail macaques (Macaca fascicularis) on the island of Mauritius: an assessment of nuclear and mitochondrial DNA polymorphisms. J. Med. Primatol. 37 (2008) 45-54
23. Knight J.C., and Kwiatkowski D. Inherited variability of tumor necrosis factor production and susceptibility to infectious disease. Proc. Assoc. Am. Phys. 111 (1999) 290-298
24. Knight J.C., Udalova I., Hill A.V., Greenwood B.M., Peshu N., Marsh K., and Kwiatkowski D. A polymorphism that affects OCT-1 binding to the TNF promoter region is associated with severe malaria. Nat. Genet. 22 (1999) 145-150
25. Kohaar I., Thakur N., Salhan S., Batra S., Singh V., Sharma A., Sodhani P., Das B.C., Sarkar D.P., and Bharadwaj M. TNFalpha-308G/A polymorphism as a risk factor for HPV associated cervical cancer in Indian population. Cell Oncol. 29 (2007) 249-256
26. Kroeger K.M., Carville K.S., and Abraham L.J. The -308 tumor necrosis factor-alpha promoter polymorphism effects transcription. Mol. Immunol. 34 (1997) 391-399
27. Maddison, W., Maddison, D., 2005. Mesquite: A Modular System for Evolutionary Analysis, Version 1.12.
28. Matsumoto J., Kawai S., Terao K., Kirinoki M., Yasutomi Y., Aikawa M., and Matsuda H. Malaria infection induces rapid elevation of the soluble Fas ligand level in serum and subsequent T. lymphocytopenia: possible factors responsible for the differences in susceptibility of two species of Macaca monkeys to Plasmodium coatneyi infection. Infect. Immun. 68 (2000) 1183-1188
29. McGuire W., Hill A.V., Allsopp C.E., Greenwood B.M., and Kwiatkowski D. Variation in the TNF-alpha promoter region associated with susceptibility to cerebral malaria. Nature 371 (1994) 508-510
30. McGuire W., Knight J.C., Hill A.V., Allsopp C.E., Greenwood B.M., and Kwiatkowski D. Severe malarial anemia and cerebral malaria are associated with different tumor necrosis factor promoter alleles. J. Infect. Dis. 179 (1999) 287-290
31. Migot-Nabias F., Mombo L.E., Luty A.J., Dubois B., Nabias R., Bisseye C., Millet P., Lu C.Y., and Deloron P. Human genetic factors related to susceptibility to mild malaria in Gabon. Genes Immun. 1 (2000) 435-441
32. Migot-Nabias F., Ollomo B., Dubreuil G., Morelli A., Domarle O., Nabias R., Georges A.J., and Millet P. Plasmodium coatneyi: differential clinical and immune responses of two populations of Macaca fascicularis from different origins. Exp. Parasitol. 91 (1999) 30-39
33. Nemec P., Pavkova-Goldbergova M., Stouracova M., Vasku A., Soucek M., and Gatterova J. Polymorphism in the tumor necrosis factor-alpha gene promoter is associated with severity of rheumatoid arthritis in the Czech population. Clin. Rheumatol. 27 (2008) 59-65
34. Praba-Egge A.D., Montenegro S., Cogswell F.B., Hopper T., and James M.A. Cytokine responses during acute simian Plasmodium cynomolgi and Plasmodium knowlesi infections. Am. J. Trop. Med. Hyg. 67 (2002) 586-596
35. Schmidt L.H., Fradkin R., Harrison J., and Rossan R.N. Differences in the virulence of Plasmodium knowlesi for Macaca irus (fascicularis) of Philippine and Malayan origins. Am J. Trop. Med. Hyg. 26 (1977) 612-622
36. Serrano N.C., Millan P., and Paez M.C. Non-HLA associations with autoimmune diseases. Autoimmun. Rev. 5 (2006) 209-214
37. Singh K.K., and Schmidtke J. Single nucleotide polymorphisms within the promoter region of the rhesus monkey tumor necrosis factor-alpha gene. Immunogenetics 57 (2005) 289-292
38. Stephens M., Smith N.J., and Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68 (2001) 978-989
39. Sussman R., and Tattersall I. Distiribution, abundance, and putative ecological strategy of Macaca fascicularis on the island of Mauritius, southwestern Indian Ocean. Folia Primatol. 46 (1986) 28-43
40. Tosi A.J., and Coke C.S. Comparative phylogenetics offer new insights into the biogeographic history of Macaca fascicularis and the origin of the Mauritian macaques. Mol. Phylogenet. Evol. 42 (2007) 498-504
41. Ubalee R., Suzuki F., Kikuchi M., Tasanor O., Wattanagoon Y., Ruangweerayut R., Na-Bangchang K., Karbwang J., Kimura A., Itoh K., Kanda T., and Hirayama K. Strong association of a tumor necrosis factor-alpha promoter allele with cerebral malaria in Myanmar. Tissue Antigens 58 (2001) 407-410
42. Wilson A.G., Symons J.A., McDowell T.L., McDevitt H.O., and Duff G.W. Effects of a polymorphism in the human tumor necrosis factor alpha promoter on transcriptional activation. Proc. Natl. Acad. Sci. U.S.A. 94 (1997) 3195-3199
43. Zhang J., Dou C., Song Y., Ji C., Gu S., Xie Y., and Mao Y. Polymorphisms of tumor necrosis factor-alpha are associated with increased susceptibility to gastric cancer: a meta-analysis. J. Hum. Genet. 53 (2008) 479-489