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Volumn 10, Issue , 2009, Pages

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies

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[No Author keywords available]

Indexed keywords

MESSENGER RNA;

EID: 67651049769     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-10-27     Document Type: Article
Times cited : (70)

References (28)
  • 1
    • 33745279056 scopus 로고    scopus 로고
    • Evaluating coverage of genome-wide association studies
    • 10.1038/ng1801 16715099
    • Barrett JC Cardon LR Evaluating coverage of genome-wide association studies Nat Genet 2006, 38(6):659-662. 10.1038/ng1801 16715099
    • (2006) Nat Genet , vol.38 , Issue.6 , pp. 659-662
    • Barrett, J.C.1    Cardon, L.R.2
  • 2
    • 33745279392 scopus 로고    scopus 로고
    • Evaluating and improving power in whole-genome association studies using fixed marker sets
    • 10.1038/ng1816 16715096
    • Pe'er I de Bakker PI Maller J Yelensky R Altshuler D Daly MJ Evaluating and improving power in whole-genome association studies using fixed marker sets Nat Genet 2006, 38(6):663-667. 10.1038/ng1816 16715096
    • (2006) Nat Genet , vol.38 , Issue.6 , pp. 663-667
    • Pe'er, I.1    de Bakker, P.I.2    Maller, J.3    Yelensky, R.4    Altshuler, D.5    Daly, M.J.6
  • 3
    • 46249123470 scopus 로고    scopus 로고
    • Calibrating the performance of SNP arrays for whole-genome association studies
    • 2432039 18584036 10.1371/journal.pgen.1000109
    • Hao K Schadt EE Storey JD Calibrating the performance of SNP arrays for whole-genome association studies PLoS Genet 2008, 4(6):e1000109. 2432039 18584036 10.1371/journal.pgen.1000109
    • (2008) PLoS Genet , vol.4 , Issue.6
    • Hao, K.1    Schadt, E.E.2    Storey, J.D.3
  • 4
    • 34547622688 scopus 로고    scopus 로고
    • Imputation-based analysis of association studies: Candidate regions and quantitative traits
    • 1934390 17676998 10.1371/journal.pgen.0030114
    • Servin B Stephens M Imputation-based analysis of association studies: candidate regions and quantitative traits PLoS Genet 2007, 3(7):e114. 1934390 17676998 10.1371/journal.pgen.0030114
    • (2007) PLoS Genet , vol.3 , Issue.7
    • Servin, B.1    Stephens, M.2
  • 5
    • 34347344976 scopus 로고    scopus 로고
    • A new multipoint method for genome-wide association studies by imputation of genotypes
    • 10.1038/ng2088 17572673
    • Marchini J Howie B Myers S McVean G Donnelly P A new multipoint method for genome-wide association studies by imputation of genotypes Nat Genet 2007, 39(7):906-913. 10.1038/ng2088 17572673
    • (2007) Nat Genet , vol.39 , Issue.7 , pp. 906-913
    • Marchini, J.1    Howie, B.2    Myers, S.3    McVean, G.4    Donnelly, P.5
  • 7
    • 37549064336 scopus 로고    scopus 로고
    • Mach 1.0: Rapid Haplotype Reconstruction and Missing Genotype Inference
    • Li Y Abecasis GR Mach 1.0: Rapid Haplotype Reconstruction and Missing Genotype Inference Am J Hum Genet 2006, S79:2290
    • (2006) Am J Hum Genet , vol.S79 , pp. 2290
    • Li, Y.1    Abecasis, G.R.2
  • 8
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • 10.1038/nature02168 14685227
    • Consortium IH The International HapMap Project Nature 2003, 426(6968):789-796. 10.1038/nature02168 14685227
    • (2003) Nature , vol.426 , Issue.6968 , pp. 789-796
    • Consortium, I.H.1
  • 9
    • 36348978013 scopus 로고    scopus 로고
    • Methods to impute missing genotypes for population data
    • 10.1007/s00439-007-0427-y 17851696
    • Yu Z Schaid DJ Methods to impute missing genotypes for population data Hum Genet 2007, 122(5):495-504. 10.1007/s00439-007-0427-y 17851696
    • (2007) Hum Genet , vol.122 , Issue.5 , pp. 495-504
    • Yu, Z.1    Schaid, D.J.2
  • 10
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • 1424677 16532393 10.1086/502802
    • Scheet P Stephens M A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase Am J Hum Genet 2006, 78(4):629-644. 1424677 16532393 10.1086/502802
    • (2006) Am J Hum Genet , vol.78 , Issue.4 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 11
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • 2265661 17924348 10.1086/521987
    • Browning SR Browning BL Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering Am J Hum Genet 2007, 81(5):1084-1097. 2265661 17924348 10.1086/521987
    • (2007) Am J Hum Genet , vol.81 , Issue.5 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 12
    • 58149175796 scopus 로고    scopus 로고
    • Practical issues in imputation-based association mapping
    • 2585794 19057666 10.1371/journal.pgen.1000279
    • Guan Y Stephens M Practical issues in imputation-based association mapping PLoS Genet 2008, 4(12):e1000279. 2585794 19057666 10.1371/ journal.pgen.1000279
    • (2008) PLoS Genet , vol.4 , Issue.12
    • Guan, Y.1    Stephens, M.2
  • 13
    • 56149105085 scopus 로고    scopus 로고
    • Analyses and comparison of accuracy of different genotype imputation methods
    • 2569208 18958166 10.1371/journal.pone.0003551
    • Pei YF Li J Zhang L Papasian CJ Deng HW Analyses and comparison of accuracy of different genotype imputation methods PLoS ONE 2008, 3(10):e3551. 2569208 18958166 10.1371/journal.pone.0003551
    • (2008) PLoS ONE , vol.3 , Issue.10
    • Pei, Y.F.1    Li, J.2    Zhang, L.3    Papasian, C.J.4    Deng, H.W.5
  • 17
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • 10.1038/ng1847 16862161
    • Price AL Patterson NJ Plenge RM Weinblatt ME Shadick NA Reich D Principal components analysis corrects for stratification in genome-wide association studies Nat Genet 2006, 38(8):904-909. 10.1038/ng1847 16862161
    • (2006) Nat Genet , vol.38 , Issue.8 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 18
    • 46149121706 scopus 로고    scopus 로고
    • Evaluating the effects of imputation on the power, coverage, and cost efficiency of genome-wide SNP platforms
    • 2443836 18589396 10.1016/j.ajhg.2008.06.008
    • Anderson CA Pettersson FH Barrett JC Zhuang JJ Ragoussis J Cardon LR Morris AP Evaluating the effects of imputation on the power, coverage, and cost efficiency of genome-wide SNP platforms Am J Hum Genet 2008, 83(1):112-119. 2443836 18589396 10.1016/j.ajhg.2008.06.008
    • (2008) Am J Hum Genet , vol.83 , Issue.1 , pp. 112-119
    • Anderson, C.A.1    Pettersson, F.H.2    Barrett, J.C.3    Zhuang, J.J.4    Ragoussis, J.5    Cardon, L.R.6    Morris, A.P.7
  • 19
    • 19844366096 scopus 로고    scopus 로고
    • Cis-acting expression quantitative trait loci in mice
    • 1088296 15837804 10.1101/gr.3216905
    • Doss S Schadt EE Drake TA Lusis AJ Cis-acting expression quantitative trait loci in mice Genome Res 2005, 15(5):681-691. 1088296 15837804 10.1101/gr.3216905
    • (2005) Genome Res , vol.15 , Issue.5 , pp. 681-691
    • Doss, S.1    Schadt, E.E.2    Drake, T.A.3    Lusis, A.J.4
  • 20
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • 170937 12883005 10.1073/pnas.1530509100
    • Storey JD Tibshirani R Statistical significance for genomewide studies Proc Natl Acad Sci USA 2003, 100(16):9440-9445. 170937 12883005 10.1073/ pnas.1530509100
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.16 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 24
    • 57549105439 scopus 로고    scopus 로고
    • Analysis of East Asia genetic substructure using genome-wide SNP arrays
    • 2587696 19057645 10.1371/journal.pone.0003862
    • Tian C Kosoy R Lee A Ransom M Belmont JW Gregersen PK Seldin MF Analysis of East Asia genetic substructure using genome-wide SNP arrays PLoS ONE 2008, 3(12):e3862. 2587696 19057645 10.1371/journal.pone.0003862
    • (2008) PLoS ONE , vol.3 , Issue.12
    • Tian, C.1    Kosoy, R.2    Lee, A.3    Ransom, M.4    Belmont, J.W.5    Gregersen, P.K.6    Seldin, M.F.7
  • 25
    • 57549090341 scopus 로고    scopus 로고
    • Accounting for ancestry: Population substructure and genome-wide association studies
    • 10.1093/hmg/ddn268 18852203
    • Tian C Gregersen PK Seldin MF Accounting for ancestry: Population substructure and genome-wide association studies Hum Mol Genet 2008, 17(R2):R143-150. 10.1093/hmg/ddn268 18852203
    • (2008) Hum Mol Genet , vol.17 , Issue.R2
    • Tian, C.1    Gregersen, P.K.2    Seldin, M.F.3
  • 26
    • 55449112450 scopus 로고    scopus 로고
    • High-resolution mapping of expression-QTLs yields insight into human gene regulation
    • 2556086 18846210 10.1371/journal.pgen.1000214
    • Veyrieras JB Kudaravalli S Kim SY Dermitzakis ET Gilad Y Stephens M Pritchard JK High-resolution mapping of expression-QTLs yields insight into human gene regulation PLoS Genet 2008, 4(10):e1000214. 2556086 18846210 10.1371/journal.pgen.1000214
    • (2008) PLoS Genet , vol.4 , Issue.10
    • Veyrieras, J.B.1    Kudaravalli, S.2    Kim, S.Y.3    Dermitzakis, E.T.4    Gilad, Y.5    Stephens, M.6    Pritchard, J.K.7
  • 27
    • 19944401078 scopus 로고    scopus 로고
    • Incorporating individual error rate into association test of unmatched case-control design
    • 10.1159/000083542 15812172
    • Hao K Wang X Incorporating individual error rate into association test of unmatched case-control design Hum Hered 2004, 58(3-4):154-163. 10.1159/000083542 15812172
    • (2004) Hum Hered , vol.58 , Issue.3-4 , pp. 154-163
    • Hao, K.1    Wang, X.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.