-
1
-
-
41949129591
-
An assessment of methods for aligning two-dimensional microscope sections to create image volumes
-
Beare R, Richards K, Murphy S, Petrou S and Reutens D 2008 An assessment of methods for aligning two-dimensional microscope sections to create image volumes J. Neurosci. Methods 170 332-44
-
(2008)
J. Neurosci. Methods
, vol.170
, Issue.2
, pp. 332-344
-
-
Beare, R.1
Richards, K.2
Murphy, S.3
Petrou, S.4
Reutens, D.5
-
2
-
-
0036977469
-
Auditory activation of 'visual' cortical areas in the blind mole rat (spalax ehrenbergi)
-
Bronchti G, Heil P, Sadka R, Hess A, Scheich H and Wollberg Z 2002 Auditory activation of 'visual' cortical areas in the blind mole rat (spalax ehrenbergi) Eur. J. Neurosci. 16 311-29
-
(2002)
Eur. J. Neurosci.
, vol.16
, Issue.2
, pp. 311-329
-
-
Bronchti, G.1
Heil, P.2
Sadka, R.3
Hess, A.4
Scheich, H.5
Wollberg, Z.6
-
3
-
-
33750843927
-
Generalized overlap measures for evaluation and validation in medical image analysis
-
Crum W R, Camara O and Hill D L G 2006 Generalized overlap measures for evaluation and validation in medical image analysis IEEE Trans. Med. Imaging 25 1451-61
-
(2006)
IEEE Trans. Med. Imaging
, vol.25
, Issue.11
, pp. 1451-1461
-
-
Crum, W.R.1
Camara, O.2
Hill, D.L.G.3
-
4
-
-
34250666634
-
Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain
-
Dauguet J, Delzescaux T, Condé F, Mangin J-F, Ayache N, Hantraye P and Frouin V 2007 Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain J. Neurosci. Methods 164 191-204
-
(2007)
J. Neurosci. Methods
, vol.164
, Issue.1
, pp. 191-204
-
-
Dauguet, J.1
Delzescaux, T.2
Condé, F.3
Mangin, J.-F.4
Ayache, N.5
Hantraye, P.6
Frouin, V.7
-
5
-
-
34548780919
-
Quantifying the A1AR distribution in peritumoral zones around experimental F98 and C6 rat brain tumours
-
Dehnhardt M, Palm C, Vieten A, Bauer A and Pietrzyk U 2007 Quantifying the A1AR distribution in peritumoral zones around experimental F98 and C6 rat brain tumours J. Neuro-Onc. 85 49-63
-
(2007)
J. Neuro-Onc.
, vol.85
, Issue.1
, pp. 49-63
-
-
Dehnhardt, M.1
Palm, C.2
Vieten, A.3
Bauer, A.4
Pietrzyk, U.5
-
6
-
-
34748850803
-
Automated three-dimensional analysis of histological and autoradiographic rat brain sections: Application to an activation study
-
Dubois A, Dauguet J, Herard A-S, Besret L, Duchesnay E, Frouin V, Hantraye P, Bonvento G and Delzescaux T 2007 Automated three-dimensional analysis of histological and autoradiographic rat brain sections: application to an activation study J. Cereb. Blood Flow Metab. 27 1742-55
-
(2007)
J. Cereb. Blood Flow Metab.
, vol.27
, Issue.10
, pp. 1742-1755
-
-
Dubois, A.1
Dauguet, J.2
Herard, A.-S.3
Besret, L.4
Duchesnay, E.5
Frouin, V.6
Hantraye, P.7
Bonvento, G.8
Delzescaux, T.9
-
7
-
-
40649104536
-
Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: Application to unilateral visual stimulation
-
Dubois A, Herard A-S, Flandin G, Duchesnay E, Besret L, Frouin V, Hantraye P, Bonvento G and Delzescaux T 2008 Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: application to unilateral visual stimulation NeuroImage 40 482-94
-
(2008)
NeuroImage
, vol.40
, Issue.2
, pp. 482-494
-
-
Dubois, A.1
Herard, A.-S.2
Flandin, G.3
Duchesnay, E.4
Besret, L.5
Frouin, V.6
Hantraye, P.7
Bonvento, G.8
Delzescaux, T.9
-
9
-
-
1142288170
-
A unified approach to fast image registration and a new curvature based registration technique
-
Fischer B and Modersitzki J 2004 A unified approach to fast image registration and a new curvature based registration technique Linear Algebra Appl. 380 107-24
-
(2004)
Linear Algebra Appl.
, vol.380
, pp. 107-124
-
-
Fischer, B.1
Modersitzki, J.2
-
11
-
-
0030152698
-
Multimodality multidimensional image analysis of cortical and subcortical plasticity in the rat brain
-
Goldszal A F, Tretiak O J, Liu D D and Hand P J 1996 Multimodality multidimensional image analysis of cortical and subcortical plasticity in the rat brain Ann. Biomed. Eng. 24 430-9
-
(1996)
Ann. Biomed. Eng.
, vol.24
, Issue.3
, pp. 430-439
-
-
Goldszal, A.F.1
Tretiak, O.J.2
Liu, D.D.3
Hand, P.J.4
-
13
-
-
0032192363
-
A new method for reliable and efficient reconstruction of 3-dimensional images from autoradiographs of brain sections
-
Hess A, Lohmann K, Gundelfinger E D and Scheich H 1998 A new method for reliable and efficient reconstruction of 3-dimensional images from autoradiographs of brain sections J. Neurosci. Methods 84 77-86
-
(1998)
J. Neurosci. Methods
, vol.84
, Issue.1-2
, pp. 77-86
-
-
Hess, A.1
Lohmann, K.2
Gundelfinger, E.D.3
Scheich, H.4
-
14
-
-
0028890042
-
The spatial accuracy of cellular dose estimates obtained from 3D reconstructed serial tissue autoradiographs
-
Humm J L, Macklis R M, Lu X Q, Yang Y, Bump K, Beresford B and Chin L M 1995 The spatial accuracy of cellular dose estimates obtained from 3D reconstructed serial tissue autoradiographs Phys. Med. Biol. 163-80
-
(1995)
Phys. Med. Biol.
, vol.40
, Issue.1
, pp. 163-180
-
-
Humm, J.L.1
MacKlis, R.M.2
Lu, X.Q.3
Yang, Y.4
Bump, K.5
Beresford, B.6
Chin, L.M.7
-
15
-
-
10744233036
-
A stereotactic method for the three-dimensional registration of multi-modality biologic images in animals: NMR, PET, histology, and autoradiography
-
Humm J L et al 2003 A stereotactic method for the three-dimensional registration of multi-modality biologic images in animals: NMR, PET, histology, and autoradiography Med. Phys. 30 2303-14
-
(2003)
Med. Phys.
, vol.30
, Issue.9
, pp. 2303-2314
-
-
Humm, J.L.1
-
17
-
-
16344389535
-
Imaging in Neurooncology
-
Jacobs A H, Kracht L W, Gossmann A, Rüger M A, Thomas A V, Thiel A and Herholz K 2005 Imaging in Neurooncology NeuroRx 2 333-47
-
(2005)
NeuroRx
, vol.2
, Issue.2
, pp. 333-347
-
-
Jacobs, A.H.1
Kracht, L.W.2
Gossmann, A.3
Rüger, M.A.4
Thomas, A.V.5
Thiel, A.6
Herholz, K.7
-
18
-
-
33747181686
-
3D volume reconstruction of a mouse brain from histological sections using warp filtering
-
Ju T, Warren J, Carson J, Bello M, Kakadiaris I, Chiu W, Thaller C and Eichele G 2006 3D volume reconstruction of a mouse brain from histological sections using warp filtering J. Neurosci. Methods 156 84-100
-
(2006)
J. Neurosci. Methods
, vol.156
, Issue.1-2
, pp. 84-100
-
-
Ju, T.1
Warren, J.2
Carson, J.3
Bello, M.4
Kakadiaris, I.5
Chiu, W.6
Thaller, C.7
Eichele, G.8
-
19
-
-
0030810112
-
Mutual information for automated unwarping of rat brain autoradiographs
-
Kim B, Boes J L, Frey K A and Meyer C R 1997 Mutual information for automated unwarping of rat brain autoradiographs NeuroImage 5 31-40
-
(1997)
NeuroImage
, vol.5
, Issue.1
, pp. 31-40
-
-
Kim, B.1
Boes, J.L.2
Frey, K.A.3
Meyer, C.R.4
-
20
-
-
1442264166
-
Reconstruction of serially acquired slices using physics-based modeling
-
Krinidis S, Nikou C and Pitas I 2003 Reconstruction of serially acquired slices using physics-based modeling IEEE Trans. Inf. Techn. Biomed. 7 394-403
-
(2003)
IEEE Trans. Inf. Techn. Biomed.
, vol.7
, Issue.4
, pp. 394-403
-
-
Krinidis, S.1
Nikou, C.2
Pitas, I.3
-
21
-
-
4344611563
-
Fusion of autoradiographs with an MR volume using 2D and 3D linear transformations
-
Malandain G, Bardinet E, Nelissen K and Vanduffel W 2004 Fusion of autoradiographs with an MR volume using 2D and 3D linear transformations NeuroImage 23 111-27
-
(2004)
NeuroImage
, vol.23
, Issue.1
, pp. 111-127
-
-
Malandain, G.1
Bardinet, E.2
Nelissen, K.3
Vanduffel, W.4
-
22
-
-
0034842816
-
Nonrigid multimodality image registration
-
Mattes D, Haynor D R, Vesselle H, Lewellen K and Eubank W 2001 Nonrigid multimodality image registration Medical Imaging 2001: Image Processing; Proc. SPIE 4322 1609-20
-
(2001)
Medical Imaging 2001: Image Processing; Proc. SPIE
, vol.4322
, pp. 1609-1620
-
-
Mattes, D.1
Haynor, D.R.2
Vesselle, H.3
Lewellen, K.4
Eubank, W.5
-
23
-
-
0242380789
-
A robust statistics-based global energy function for the alignment of serially acquired autoradiographic sections
-
Nikou C, Heitz F, Nehlig A, Namer I J and Armspach J-P 2003 A robust statistics-based global energy function for the alignment of serially acquired autoradiographic sections J. Neurosci. Methods 124 93-102
-
(2003)
J. Neurosci. Methods
, vol.124
, Issue.1
, pp. 93-102
-
-
Nikou, C.1
Heitz, F.2
Nehlig, A.3
Namer, I.J.4
Armspach, J.-P.5
-
24
-
-
84958167132
-
Fusion of histological sections and MR images: Towards the construction of an atlas of the human basal ganglia
-
Ourselin S, Bardinet E, Dormont D, Malandain G, Roche A, Ayache N, Tandé D, Parain K and Yelnik J 2001 Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia Medical Image Computing and Computer-Assisted Intervention-MICCAI 2001 (Lecture Notes in Computer Science 2208) ed W Niessen and M Viergever (Berlin: Springer) pp 743-51
-
(2001)
Medical Image Computing and Computer-Assisted Intervention-MICCAI 2001
, pp. 743-751
-
-
Ourselin, S.1
Bardinet, E.2
Dormont, D.3
Malandain, G.4
Roche, A.5
Ayache, N.6
Tandé, D.7
Parain, K.8
Yelnik, J.9
-
25
-
-
0035152169
-
Reconstructing a 3D structure from serial histological sections
-
Ourselin S, Roche A, Subsol G, Pennec X and Ayache N 2000 Reconstructing a 3D structure from serial histological sections Image Vis. Comput. 19 25-31
-
(2000)
Image Vis. Comput.
, vol.19
, Issue.1-2
, pp. 25-31
-
-
Ourselin, S.1
Roche, A.2
Subsol, G.3
Pennec, X.4
Ayache, N.5
-
27
-
-
43449098560
-
Fusion of rat brain histology and MRI using weighted multi-image mutual information
-
Palm C, Penney G P, Crum W R, Schnabel J A, Pietrzyk U and Hawkes D J 2008 Fusion of rat brain histology and MRI using weighted multi-image mutual information Medical Imaging 2008: Image Processing; Proc. SPIE 6914 69140M
-
(2008)
Medical Imaging 2008: Image Processing; Proc. SPIE
, vol.6914
-
-
Palm, C.1
Penney, G.P.2
Crum, W.R.3
Schnabel, J.A.4
Pietrzyk, U.5
Hawkes, D.J.6
-
28
-
-
15044344615
-
18F]fluoroethyl)-L -tyrosine PET combined with MRI improves the diagnostic assessment of cerebral gliomas
-
18F]fluoroethyl)-L -tyrosine PET combined with MRI improves the diagnostic assessment of cerebral gliomas Brain 128 678-87
-
(2005)
Brain
, vol.128
, Issue.3
, pp. 678-687
-
-
Pauleit, D.1
Floeth, F.2
Hamacher, K.3
Riemenschneider, M.J.4
Reifenberger, G.5
Müller, H.-W.6
Zilles, K.7
Coenen, H.H.8
Langen, K.-J.9
-
29
-
-
0142148079
-
Towards reconstructing a volumetric data set from dual-isotope autoradiographic images
-
Pietrzyk U, Bauer A and Zilles K 2002 Towards reconstructing a volumetric data set from dual-isotope autoradiographic images IEEE Nucl. Sci. Symp. Conf. Rec. 2 1105-7
-
(2002)
IEEE Nucl. Sci. Symp. Conf. Rec.
, vol.2
, pp. 1105-1107
-
-
Pietrzyk, U.1
Bauer, A.2
Zilles, K.3
-
30
-
-
23844452094
-
Creating consistent 3D multi-modality data sets from autoradiographic and histological images of the rat brain
-
Pietrzyk U, Bauer D, Vieten A, Bauer A, Langen K-J, Zilles K and Palm C 2004 Creating consistent 3D multi-modality data sets from autoradiographic and histological images of the rat brain IEEE Nucl. Sci. Symp. Conf. Rec. 6 4001-3
-
(2004)
IEEE Nucl. Sci. Symp. Conf. Rec.
, vol.6
, pp. 4001-4003
-
-
Pietrzyk, U.1
Bauer, D.2
Vieten, A.3
Bauer, A.4
Langen, K.-J.5
Zilles, K.6
Palm, C.7
-
31
-
-
33645845387
-
Piecewise affine registration of biological images for volume reconstruction
-
Pitiot A, Bardinet E, Thompson P M and Malandain G 2006 Piecewise affine registration of biological images for volume reconstruction Med. Imaging Anal. 10 465-83
-
(2006)
Med. Imaging Anal.
, vol.10
, Issue.3
, pp. 465-483
-
-
Pitiot, A.1
Bardinet, E.2
Thompson, P.M.3
Malandain, G.4
-
33
-
-
0031215936
-
A robust point matching algorithm for autoradiograph alignment
-
Rangarajan A, Chui H, Pappu S, Davachi L, Goldman-Rakic P S and Duncan J S 1997 A robust point matching algorithm for autoradiograph alignment Med. Imaging. Anal. 4 379-98
-
(1997)
Med. Imaging. Anal.
, vol.1
, Issue.4
, pp. 379-398
-
-
Rangarajan, A.1
Chui, H.2
Pappu, S.3
Davachi, L.4
Goldman-Rakic, P.S.5
Duncan, J.S.6
-
34
-
-
0032593911
-
Comparison and evaluation of rigid and non-rigid registration of breast MR images
-
Rückert D, Sonoda L I, Denton E, Rankin S, Hayes C, Leach M O, Hill D and Hawkes D J 1999 Comparison and evaluation of rigid and non-rigid registration of breast MR images Proc. SPIE 3661 78-87
-
(1999)
Proc. SPIE
, vol.3661
, pp. 78-87
-
-
Rückert, D.1
Sonoda, L.I.2
Denton, E.3
Rankin, S.4
Hayes, C.5
Leach, M.O.6
Hill, D.7
Hawkes, D.J.8
-
35
-
-
0029784840
-
Neuronal hyperexcitability and reduction of GABAA-receptor expression in the surround of cerebral photothrombosis
-
Schiene K, Bruehl C, Zilles K, Qu M, Hagemann G, Kraemer M and Witte O W 1996 Neuronal hyperexcitability and reduction of GABAA-receptor expression in the surround of cerebral photothrombosis J. Cereb. Blood Flow Metab. 16 906-14
-
(1996)
J. Cereb. Blood Flow Metab.
, vol.16
, pp. 906-914
-
-
Schiene, K.1
Bruehl, C.2
Zilles, K.3
Qu, M.4
Hagemann, G.5
Kraemer, M.6
Witte, O.W.7
-
36
-
-
33846616247
-
Image registration of sectioned brains
-
Schmitt O, Modersitzki J, Heldmann S, Wirtz S and Fischer B 2007 Image registration of sectioned brains Int. J. Comput. Vis. 73 5-39
-
(2007)
Int. J. Comput. Vis.
, vol.73
, Issue.1
, pp. 5-39
-
-
Schmitt, O.1
Modersitzki, J.2
Heldmann, S.3
Wirtz, S.4
Fischer, B.5
-
37
-
-
0029269787
-
Statistics and deformations in histology and application to improved alignment with MRI
-
Schormann T, Dabringhaus A and Zilles K 1995 Statistics and deformations in histology and application to improved alignment with MRI IEEE Med. Imaging 14 25-35
-
(1995)
IEEE Med. Imaging
, vol.14
, Issue.1
, pp. 25-35
-
-
Schormann, T.1
Dabringhaus, A.2
Zilles, K.3
-
38
-
-
33746625248
-
A protocol for evaluation of similarity measures for rigid registration
-
DOI 10.1109/TMI.2006.874963, 1637535
-
kerl D, Likar B and Pernu F 2006 A protocol for evaluation of similarity measures for rigid registration IEEE Trans. Med. Imaging 25 779-91 (Pubitemid 44143894)
-
(2006)
IEEE Transactions on Medical Imaging
, vol.25
, Issue.6
, pp. 779-791
-
-
Skerl, D.1
Likar, B.2
Pernus, F.3
-
40
-
-
0036034807
-
Splines: A perfect fit for medical imaging
-
Unser M 2002 Splines: a perfect fit for medical imaging Proc. SPIE 4684 225-36
-
(2002)
Proc. SPIE
, vol.4684
, pp. 225-236
-
-
Unser, M.1
-
41
-
-
5644302571
-
Super-fast elastic registration of histologic images of a whole rat brain for three-dimensional reconstruction
-
Wirtz S, Papenberg N, Fischer B and Schmitt O 2004 Super-fast elastic registration of histologic images of a whole rat brain for three-dimensional reconstruction Proc. SPIE 5370 328-34
-
(2004)
Proc. SPIE
, vol.5370
, pp. 328-334
-
-
Wirtz, S.1
Papenberg, N.2
Fischer, B.3
Schmitt, O.4
-
42
-
-
0027882130
-
Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method
-
Zhao W, Young T and Ginsberg M 1993 Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method IEEE Trans. Med. Imaging 12 782-91
-
(1993)
IEEE Trans. Med. Imaging
, vol.12
, Issue.4
, pp. 782-791
-
-
Zhao, W.1
Young, T.2
Ginsberg, M.3
-
43
-
-
0942265691
-
Statistical validation of image segmentation quality based on a spatial overlap index
-
Zou K H, Warfield S K, Bharatha A, Tempany C M C, Kaus M R, Haker S J, Wells W M, Jolesz F A and Kininis R 2004 Statistical validation of image segmentation quality based on a spatial overlap index Acad. Radiol. 11 178-89
-
(2004)
Acad. Radiol.
, vol.11
, Issue.2
, pp. 178-189
-
-
Zou, K.H.1
Warfield, S.K.2
Bharatha, A.3
Tempany, C.M.C.4
Kaus, M.R.5
Haker, S.J.6
Wells, W.M.7
Jolesz, F.A.8
Kininis, R.9
|