Fusion of rat brain histology and MRI using weighted multi-image mutual information

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 6914, Issue , 2008, Pages

  Palm, Christoph ^a,b   Penney, Graeme P ^c   Crum, William R ^c   Schnabel, Julia A ^d   Pietrzyk, Uwe ^b,e   Hawkes, David J ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b FORSCHUNGSZENTRUM JÜLICH   (Germany)

^c KING'S COLLEGE LONDON   (United Kingdom)

^d UNIVERSITY OF OXFORD   (United Kingdom)

^e UNIVERSITY OF WUPPERTAL   (Germany)

Author keywords

Multi modal image fusion; Mutual information; Registration

Indexed keywords

BRAIN; HISTOLOGY; IMAGE FUSION; RATS; THREE DIMENSIONAL; TISSUE;

MULTI-MODAL IMAGE FUSION; MUTUAL INFORMATION;

MAGNETIC RESONANCE IMAGING;

EID: 43449098560     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.770605     Document Type: Conference Paper

References (16)

1. C. Nikou, F. Heitz, A. Nehling, I. Namer, and J.-P. Armspach, "A robust statistics-based global energy function for the alignment of serially acquired autoradiographic sections," Journal Neuroscience Methods 124, pp. 93-102, 2003.
2. S. Ourselin, A. Roche, G. Subsol, X. Pennec, and N. Ayache, "Reconstructing a 3D structure form serial histologic sections," Image Vision Computing 19, pp. 25-31, 2000.
3. U. Pietrzyk, D. Bauer, A. Vieten, A. Bauer, K.-J. Langen, K. Zilles, and C. Palm, "Creating consistent 3D multi-modality data sets from autoradiographic and histological images of the rat brain," in IEEE Nuclear Science Symposium Conference Record, 6, pp. 4001-4003, 2004.
4. J. L. Humm, R. M. Macklis, X. Q. Lu, Y. Yang, K. Bump, B. Beresford, and L. M. Chin, "The spatial accuracy of cellular dose estimates obtained from 3D reconstructed serial tissue autoradiographs," Physics Medicine Biology, pp. 163-180, 1995.
5. S. Krinidis, C. Nikou, and I. Pitas, "Reconstruction of serially acquired slices using physics-based modeling," IEEE Transactions Information Techniques and Biomedicine 7(4), pp. 394-403, 2003.
6. A. Rangarajan, H. Chui, S. Pappu, L. Davachi, P. S. Goldman-Rakic, and J. S. Duncan, "A robust point matching algorithm for autoradiographic alignment," Medical Image Analysis 4(1), pp. 379-398, 1997.
7. O. Schmitt, J. Modersitzki, S. Heldmann, S. Wirtz, and B. Fischer, "Image registration of sectioned brains," International Journal of Computer Vision 73, pp. 5-39, June 2007.
8. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, N. Ayache, D. Tandé, K. Parain, and J. Yelnik, "Fusion of histological sections and MR images: Towards the construction of an atlas of the human basal ganglia," in MICCAI 2001, W. Niessen and M. Viergever, eds., pp. 743-751, Springer, 2001.
9. G. Malandain, E. Bardinet, K. Nelissen, and W. Vanduffel, "Fusion of autoradiographs with an MR volume using 2D and 3D linear transformations," NeuroImage 23, pp. 111-127, 2004.
10. P. A. Yushkevich, B. B. Avants, L. Ng, M. Hawrylycz, P. D. Burstein, H. Zhang, and J. C. Gee, "3D mouse brain reconstruction from histology using a coarse-to-fine approach," in WBIR 2006, J. P. W. Pluim, B. Likar, and F. A. Gerritsen, eds., pp. 230-237, Springer, 2006.
11. J. P. W. Pluim, J. B. A. Maintz, and M. A. Viergever, "Mutual-information-based registration of medical images: A survey," IEEE Transactions Medical Imaging 22, pp. 986-1004, Aug. 2003.
12. G. P. Penney, J. A. Schnabel, D. Rueckert, M. A. Viergever, and W. J. Niessen, "Registration-based interpolation," IEEE Transactions Medical Imaging 23, pp. 922-926, July 2004.
13. P. Thévenaz, M. Bierlaire, and M. Unser, "Halton sampling for image registration based on mutual information," Sampling Theory in Signal and Image Processing, in press, 2008.
14. C. Studholme, D. L. G. Hill, and D. J. Hawkes, "Incorporating connected region labelling into automated image registration using mutual information," in IEEE Proceedings MMBIA '96, pp. 23-31, 1996.
15. M. Styner, C. Brechbühler, G. Székely, and G. Gerig, "Parametric estimate of intensity inhomogeneities applied to MRI," IEEE Transactions Medical Imaging 19, pp. 153-165, March 2000.
16. W. R. Crum, O. Camara, and D. Hill, "Generalized overlap measures for evaluation and validation in medical image analysis," IEEE Transactions Medical Imaging 25, pp. 1451-1461, Nov. 2006.