-
2
-
-
33644878582
-
ASD: A bioinformatics resource on alternative splicing
-
10.1093/nar/gkj031
-
Stamm S Riethoven JJ Le Texier V Gopalakrishnan C Kumanduri V Tang Y Barbosa-Morais NL Thanaraj TA ASD: A bioinformatics resource on alternative splicing Nucleic Acids Res 2006, 34:46-55. 10.1093/nar/gkj031
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 46-55
-
-
Stamm, S.1
Riethoven, J.J.2
Le Texier, V.3
Gopalakrishnan, C.4
Kumanduri, V.5
Tang, Y.6
Barbosa-Morais, N.L.7
Thanaraj, T.A.8
-
3
-
-
33846036722
-
The ASAP II database: Analysis and comparative genomics of alternative splicing in 15 animal species
-
1669709 17108355 10.1093/nar/gkl884
-
Kim N Alekseyenko AV Roy M Lee C The ASAP II database: Analysis and comparative genomics of alternative splicing in 15 animal species Nucleic Acids Res 2007, 35:D93-D98. 1669709 17108355 10.1093/nar/gkl884
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kim, N.1
Alekseyenko, A.V.2
Roy, M.3
Lee, C.4
-
4
-
-
13244292333
-
DEDB: A database of Drosophila melanogaster exons in splicing graph form
-
538278 15581431 10.1186/1471-2105-5-189
-
Lee BTK Tan TW Ranganathan S DEDB: A database of Drosophila melanogaster exons in splicing graph form BMC Bioinformatics 2004, 5:189. 538278 15581431 10.1186/1471-2105-5-189
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 189
-
-
Lee, B.T.K.1
Tan, T.W.2
Ranganathan, S.3
-
5
-
-
3843111257
-
The Alternative Splicing Gallery (ASG): Bridging the gap between genome and transcriptome
-
3983 506815 15292448 10.1093/nar/gkh731
-
Leipzig J Pevzner P Heber S The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome Nucleic Acids Res 2004, 32:3977. 3983 506815 15292448 10.1093/nar/gkh731
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3977-3983
-
-
Leipzig, J.1
Pevzner, P.2
Heber, S.3
-
6
-
-
33747852037
-
ASGS: An alternative splicing graph web service
-
1538904 16845045 10.1093/nar/gkl268
-
Bollina D Lee BTK Tan TW Ranganathan S ASGS: An alternative splicing graph web service Nucleic Acids Res 2006, 34:W444-W447. 1538904 16845045 10.1093/nar/gkl268
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Bollina, D.1
Lee, B.T.K.2
Tan, T.W.3
Ranganathan, S.4
-
7
-
-
33846039709
-
ECgene: An alternative splicing database update
-
1716719 17132829 10.1093/nar/gkl992
-
Lee Y Lee Y Kim B Shin Y Nam S Kim P Kim N Chung WH Kim J Lee S ECgene: an alternative splicing database update Nucleic Acids Res 2006, 35:D99-D103. 1716719 17132829 10.1093/nar/gkl992
-
(2006)
Nucleic Acids Res
, vol.35
-
-
Lee, Y.1
Lee, Y.2
Kim, B.3
Shin, Y.4
Nam, S.5
Kim, P.6
Kim, N.7
Chung, W.H.8
Kim, J.9
Lee, S.10
-
8
-
-
0026794668
-
The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: Causes and consequences
-
1427786
-
Krawczak M Reiss J Cooper DN The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: Causes and consequences Hum Genet 1992, 90(1-2):41-54. 1427786
-
(1992)
Hum Genet
, vol.90
, Issue.1-2
, pp. 41-54
-
-
Krawczak, M.1
Reiss, J.2
Cooper, D.N.3
-
10
-
-
17244377195
-
Bioinformatics analysis of alternative splicing
-
10.1093/bib/6.1.23 15826354
-
Lee C Wang Q Bioinformatics analysis of alternative splicing Brief. Bioinform 2005, 6:23-33. 10.1093/bib/6.1.23 15826354
-
(2005)
Brief. Bioinform
, vol.6
, pp. 23-33
-
-
Lee, C.1
Wang, Q.2
-
11
-
-
0036337915
-
A genomic view of alternative splicing
-
10.1038/ng0102-13 11753382
-
Modrek B Lee C A genomic view of alternative splicing Nature Genet 2002, 30:13-19. 10.1038/ng0102-13 11753382
-
(2002)
Nature Genet
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
13
-
-
13444267842
-
ECgene: Genome annotation for alternative splicing
-
540072 15608289 10.1093/nar/gki118
-
Kim P Kim N Lee Y Kim B Shin Y Lee S ECgene: Genome annotation for alternative splicing Nucleic Acids Res 2005, 33:D75-D79. 540072 15608289 10.1093/nar/gki118
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Kim, P.1
Kim, N.2
Lee, Y.3
Kim, B.4
Shin, Y.5
Lee, S.6
-
14
-
-
33846681383
-
Different levels of alternative splicing among eukaryotes
-
1802581 17158149 10.1093/nar/gkl924
-
Kim E Magen A Ast G Different levels of alternative splicing among eukaryotes Nucleic Acids Res 2007, 35:125-131. 1802581 17158149 10.1093/ nar/gkl924
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 125-131
-
-
Kim, E.1
Magen, A.2
Ast, G.3
-
15
-
-
34247360831
-
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes
-
1852814 17369312 10.1261/rna.325107
-
Alekseyenko AV Kim N Lee C Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes RNA 2007, 13:661-670. 1852814 17369312 10.1261/rna.325107
-
(2007)
RNA
, vol.13
, pp. 661-670
-
-
Alekseyenko, A.V.1
Kim, N.2
Lee, C.3
-
16
-
-
34547599504
-
ASTALAVISTA: Dynamic and flexible analysis of alternative splicing events in custom gene datasets
-
1933205 17485470 10.1093/nar/gkm311
-
Foissac S Sammeth M ASTALAVISTA: Dynamic and flexible analysis of alternative splicing events in custom gene datasets Nucleic Acids Res 2007, 35:W297-W299. 1933205 17485470 10.1093/nar/gkm311
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Foissac, S.1
Sammeth, M.2
-
17
-
-
33846039019
-
Ensembl 2007
-
1761443 17148474 10.1093/nar/gkl996
-
Hubbard TJ Aken BL Beal K Ballester B Caccamo M Chen Y Clarke L Coates G Cunningham F Cutts T Down T Dyer SC Fitzgerald S Fernandez-Banet J Graf S Haider S Hammond M Herrero J Holland R Howe K Howe K Johnson N Kahari A Keefe D Kokocinski F Kulesha E Lawson D Longden I Melsopp C Megy K Meidl P Ouverdin B Parker A Prlic A Rice S Rios D Schuster M Sealy I Severin J Slater G Smedley D Spudich G Trevanion S Vilella A Vogel J White S Wood M Cox T Curwen V Durbin R Fernandez-Suarez XM Flicek P Kasprzyk A Proctor G Searle S Smith J Ureta-Vidal A Birney E Ensembl 2007 Nucleic Acids Res 2007, 35:D610-D617. 1761443 17148474 10.1093/nar/ gkl996
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Hubbard, T.J.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
Down, T.11
Dyer, S.C.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Graf, S.15
Haider, S.16
Hammond, M.17
Herrero, J.18
Holland, R.19
Howe, K.20
Howe, K.21
Johnson, N.22
Kahari, A.23
Keefe, D.24
Kokocinski, F.25
Kulesha, E.26
Lawson, D.27
Longden, I.28
Melsopp, C.29
Megy, K.30
Meidl, P.31
Ouverdin, B.32
Parker, A.33
Prlic, A.34
Rice, S.35
Rios, D.36
Schuster, M.37
Sealy, I.38
Severin, J.39
Slater, G.40
Smedley, D.41
Spudich, G.42
Trevanion, S.43
Vilella, A.44
Vogel, J.45
White, S.46
Wood, M.47
Cox, T.48
Curwen, V.49
Durbin, R.50
Fernandez-Suarez, X.M.51
Flicek, P.52
Kasprzyk, A.53
Proctor, G.54
Searle, S.55
Smith, J.56
Ureta-Vidal, A.57
Birney, E.58
more..
-
18
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
International Chicken Genome Sequencing Consortium 10.1038/nature03154 15592404
-
International Chicken Genome Sequencing Consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Nature 2004, 432:695-716. 10.1038/nature03154 15592404
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
19
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556 10802651
-
Ashburner M Ball CA Blake JA Botstein D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT Harris MA Hill DP Issel-Tarver L Kasarskis A Lewis S Matese JC Richardson JE Ringwald M Rubin GM Sherlock G Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium Nat Genet 2000, 25:25-29. 10.1038/75556 10802651
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
21
-
-
24044522270
-
BioMart and Bioconductor: A powerful link between biological databases and microarray data analysis
-
10.1093/bioinformatics/bti525 16082012
-
Durinck S Moreau Y Kasprzyk A Davis S De Moor B Brazma A Huber W BioMart and Bioconductor: A powerful link between biological databases and microarray data analysis Bioinformatics 2005, 21(16):3439-40. 10.1093/ bioinformatics/bti525 16082012
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3439-3440
-
-
Durinck, S.1
Moreau, Y.2
Kasprzyk, A.3
Davis, S.4
De Moor, B.5
Brazma, A.6
Huber, W.7
-
22
-
-
33747846582
-
WEGO: A tool for plotting GO annotations
-
10.1093/nar/gkl031
-
Ye J Fang L Zheng H Zhang Y Chen J Zhang Z Wang J Li S Li R Bolund L Wang J WEGO: A tool for plotting GO annotations Nucleic Acids Res 2006, 34:293-297. 10.1093/nar/gkl031
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 293-297
-
-
Ye, J.1
Fang, L.2
Zheng, H.3
Zhang, Y.4
Chen, J.5
Zhang, Z.6
Wang, J.7
Li, S.8
Li, R.9
Bolund, L.10
Wang, J.11
-
23
-
-
2442694425
-
Transcriptome and genome conservation of alternative splicing events in humans and mice
-
14992493
-
Sugnet CW Kent WJ Ares M Jr Haussler D Transcriptome and genome conservation of alternative splicing events in humans and mice Pac Symp Biocomput 2004, 66:77. 14992493
-
(2004)
Pac Symp Biocomput
, pp. 66-77
-
-
Sugnet, C.W.1
Kent, W.J.2
Ares Jr., M.3
Haussler, D.4
-
24
-
-
0033178886
-
Intron-exon structures of eukaryotic model organisms
-
148551 10454621 10.1093/nar/27.15.3219
-
Deutsch M Long M Intron-exon structures of eukaryotic model organisms Nucleic Acids Res 1999, 27:3219-3228. 148551 10454621 10.1093/nar/ 27.15.3219
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3219-3228
-
-
Deutsch, M.1
Long, M.2
-
25
-
-
33644877169
-
HOLLYWOOD: A comparative relational database of alternative splicing
-
1347411 16381932 10.1093/nar/gkj048
-
Holste D Huo G Tung V Burge CB HOLLYWOOD: A comparative relational database of alternative splicing Nucleic Acids Res 2006, 34:D56-D62. 1347411 16381932 10.1093/nar/gkj048
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Holste, D.1
Huo, G.2
Tung, V.3
Burge, C.B.4
-
26
-
-
4143069189
-
Protein domains correlate strongly with exons in multiple eukaryotic genomes - Evidence of exon shuffling?
-
10.1016/j.tig.2004.06.013
-
Liu M Grigoriev A Protein domains correlate strongly with exons in multiple eukaryotic genomes - evidence of exon shuffling? Trends in Genetics 2004, 20:99-403. 10.1016/j.tig.2004.06.013
-
(2004)
Trends in Genetics
, vol.20
, pp. 99-403
-
-
Liu, M.1
Grigoriev, A.2
-
27
-
-
67650520917
-
Intron-dependent evolution: Preferred types of exon shuffling: Illegitimate recombination
-
Patthy L Intron-dependent evolution: Preferred types of exon shuffling: illegitimate recombination Genetica 1987, 118:245-249.
-
(1987)
Genetica
, vol.118
, pp. 245-249
-
-
Patthy, L.1
|