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Volumn , Issue , 2009, Pages 114-120

Predicting protein subcellular locations for gram-negative bacteria using neural networks ensemble

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; ELMAN NETWORK; GRAM-NEGATIVE BACTERIA; HOST ORGANISM; PATHOGENIC BACTERIUM; PROTEIN SUBCELLULAR LOCATION; TRAINING FUNCTION;

EID: 67650394203     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CIBCB.2009.4925716     Document Type: Conference Paper
Times cited : (5)

References (41)
  • 1
    • 0000631895 scopus 로고
    • The differential staining of schizomycetes in tissue sections and in dried preparations
    • H.C. Gram, "The differential staining of schizomycetes in tissue sections and in dried preparations," Fortschitte der Medicin, Vol. 2, pp. 185-189, 1884.
    • (1884) Fortschitte der Medicin , vol.2 , pp. 185-189
    • Gram, H.C.1
  • 2
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • DOI 10.1006/jmbi.2000.3903
    • O. Emanuelsson, H. Nielsen, S. Brunak and G. Heijne, "Predicting subcellular localization of proteins based on their N-terminal amino acid sequence," J. Mol. Biol., Vol. 300, no. 4, pp. 1005-1016, 2000. (Pubitemid 30708188)
    • (2000) Journal of Molecular Biology , vol.300 , Issue.4 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    Von Heijne, G.4
  • 3
    • 0034843744 scopus 로고    scopus 로고
    • Support vector machine approach for protein subcellular localization prediction
    • S. Hua and Z. Sun, "Support vector machine approach for protein subcellular localization prediction," Bioinformatics, Vol. 17, no. 8, pp. 721-728, 2001. (Pubitemid 32851380)
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 721-728
    • Hua, S.1    Sun, Z.2
  • 4
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo-amino acid composition
    • DOI 10.1002/prot.1035
    • K.C. Chou, "Prediction of protein cellular attributes using pseudo-amino acid composition, Proteins," Vol. 43, pp. 246-255, 2001. (Pubitemid 32367799)
    • (2001) Proteins: Structure, Function and Genetics , vol.43 , Issue.3 , pp. 246-255
    • Chou, K.-C.1
  • 6
    • 32344433486 scopus 로고    scopus 로고
    • Predicting protein-protein interactions from sequences in a hybridization space
    • DOI 10.1021/pr050331g
    • K.C. Chou and Y.D. Cai, "Predicting protein-protein interactions from sequences in a hybridization space," Journal of Proteome Research, Vol. 5, pp. 316-322, 2006. (Pubitemid 43222299)
    • (2006) Journal of Proteome Research , vol.5 , Issue.2 , pp. 316-322
    • Chou, K.-C.1    Cai, Y.-D.2
  • 7
    • 0037233515 scopus 로고    scopus 로고
    • Subcellular location prediction of apoptosis
    • G.P. Zhou and K. Doctor, "Subcellular location prediction of apoptosis," Proteins, Vol. 50, pp. 44-48, 2003.
    • (2003) Proteins , vol.50 , pp. 44-48
    • Zhou, G.P.1    Doctor, K.2
  • 8
    • 0035400226 scopus 로고    scopus 로고
    • Some insights into protein structural class prediction
    • DOI 10.1002/prot.1071
    • G.P. Zhou and N. Assa-Munt, "Some insights into protein structural class prediction," Proteins, Vol. 44, pp. 57-59, 2001. (Pubitemid 32510584)
    • (2001) Proteins: Structure, Function and Genetics , vol.44 , Issue.1 , pp. 57-59
    • Zhou, G.P.1    Assa-Munt, N.2
  • 9
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class protein fold recognition using support vector machines and neural networks
    • C.H. Ding and I. Dubchak, "Multi-class protein fold recognition using support vector machines and neural networks," Bioinformatics, Vol. 17, pp. 349-358, 2001. (Pubitemid 32421929)
    • (2001) Bioinformatics , vol.17 , Issue.4 , pp. 349-358
    • Ding, C.H.Q.1    Dubchak, I.2
  • 10
    • 0033909566 scopus 로고    scopus 로고
    • Protein sorting signals and prediction of subcellular localization
    • K. Nakai, "Protein sorting signals and prediction of subcellular localization," Adv. Protein Chem., Vol. 54, pp. 277-344, 2000. (Pubitemid 30458951)
    • (2000) Advances in Protein Chemistry , vol.54 , pp. 277-344
    • Nakai, K.1
  • 11
    • 0025933503 scopus 로고
    • Expert system for predicting protein localization sites in Gram-negative bacteria
    • K. Nakai and M. Kanehisa, "Expert system for predicting protein localization sites in Gram-negative bacteria," Proteins, Vol. 11, no. 2, pp. 95-110, 1991.
    • (1991) Proteins , vol.11 , Issue.2 , pp. 95-110
    • Nakai, K.1    Kanehisa, M.2
  • 13
    • 1942505330 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
    • DOI 10.1110/ps.03479604
    • C. S. Yu, C.J. Lin and J.K. Hwang, "Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions," Protein Science, Vol. 13, no. 5, pp. 1402-1406, 2004. (Pubitemid 38526105)
    • (2004) Protein Science , vol.13 , Issue.5 , pp. 1402-1406
    • Yu, C.-S.1    Lin, C.-J.2    Hwang, J.-K.3
  • 14
    • 0042674397 scopus 로고    scopus 로고
    • Using a neural network and spatial clustering to predict the location of active sites in enzymes
    • A. Gutteridge, G.J. Bartlett and J.M. Thornton, "Using a neural network and spatial clustering to predict the location of active sites in enzymes," J. Mol. Biol., Vol. 330, pp. 719-734, 2003.
    • (2003) J. Mol. Biol. , vol.330 , pp. 719-734
    • Gutteridge, A.1    Bartlett, G.J.2    Thornton, J.M.3
  • 19
    • 0025448521 scopus 로고
    • The strength of weak learnability
    • R.E. Schapire, "The strength of weak learnability," Machine learning, Vol. 5, no. 2, pp. 197-227, 1990.
    • (1990) Machine learning , vol.5 , Issue.2 , pp. 197-227
    • Schapire, R.E.1
  • 20
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • L. Breiman, "Bagging predictors, Machine Learning," Vol. 24, no. 2, pp. 123-140, 1996 (Pubitemid 126724382)
    • (1996) Machine Learning , vol.24 , Issue.2 , pp. 123-140
    • Breiman, L.1
  • 22
    • 0036567392 scopus 로고    scopus 로고
    • Ensembling neural networks: Many could be better than all
    • DOI 10.1016/S0004-3702(02)00190-X, PII S000437020200190X
    • Z.H. Zhou, J. Wu and W. Tang, "Ensembling neural networks: Many could be better than all," Artificial Intelligence, Vol. 137, no. 1-2, pp. 239-263, 2002. (Pubitemid 34405220)
    • (2002) Artificial Intelligence , vol.137 , Issue.1-2 , pp. 239-263
    • Zhou, Z.-H.1    Wu, J.2    Tang, W.3
  • 23
    • 14544297375 scopus 로고    scopus 로고
    • Neural network ensembles: Evaluation of aggregation algorithms
    • DOI 10.1016/j.artint.2004.09.006, PII S0004370204001894
    • P.M. Granitto, P.F. Verdes and H.A. Ceccatto, "Neural network ensembles: evaluation of aggregation algorithms," Artificial Intelligence, Vol. 163, no. 2, pp. 139-162, Apr. 2005. (Pubitemid 40304389)
    • (2005) Artificial Intelligence , vol.163 , Issue.2 , pp. 139-162
    • Granitto, P.M.1    Verdes, P.F.2    Ceccatto, H.A.3
  • 24
    • 30344458742 scopus 로고    scopus 로고
    • The classification of cancer based on DNA microarray data that uses diverse ensemble genetic programming
    • DOI 10.1016/j.artmed.2005.06.002, PII S0933365705000795
    • Jin-Hyuk Hong and Sung-Bae Cho, "The classification of cancer based on DNA microarray data that uses diverse ensemble genetic programming," Artificial Intelligence in Medicine, Vol. 36, no. 1, pp. 43-58, Jan. 2006. (Pubitemid 43068582)
    • (2006) Artificial Intelligence in Medicine , vol.36 , Issue.1 , pp. 43-58
    • Hong, J.-H.1    Cho, S.-B.2
  • 25
    • 45549107002 scopus 로고    scopus 로고
    • A dynamic overproduce-and-choose strategy for the selection of classifier ensembles
    • E.M. Dos Santos, R. Sabourin and P. Maupin, "A dynamic overproduce-and-choose strategy for the selection of classifier ensembles," Pattern Recognition, Vol. 41, no. 10, pp. 2993-3009, 2008.
    • (2008) Pattern Recognition , vol.41 , Issue.10 , pp. 2993-3009
    • Santos, E.M.D.1    Sabourin, R.2    Maupin, P.3
  • 26
    • 33845423991 scopus 로고    scopus 로고
    • Large-scale predictions of gram-negative bacterial protein subcellular locations
    • DOI 10.1021/pr060404b
    • K.C. Chou and H.B. Shen, 'Large-scale predictions of Gram-negative bacterial protein subcellular locations, ' J. proteome Res., Vol. 5, pp. 3420-3428, 2006. (Pubitemid 44904333)
    • (2006) Journal of Proteome Research , vol.5 , Issue.12 , pp. 3420-3428
    • Chou, K.-C.1    Shen, H.-B.2
  • 27
    • 26444565569 scopus 로고
    • Finding structure in time
    • J.L. Elman, "Finding structure in time," Cognitive Sci., Vol. 14, no. 2, pp. 179-211, 1990.
    • (1990) Cognitive Sci. , vol.14 , Issue.2 , pp. 179-211
    • Elman, J.L.1
  • 28
    • 0000442791 scopus 로고
    • Generalization of back-propagation to recurrent neural networks
    • F.J. Pineda, "Generalization of back-propagation to recurrent neural networks," Phys. Rev. Lett., Vol. 59, no. 19, pp. 2229-2232, 1987.
    • (1987) Phys. Rev. Lett. , vol.59 , Issue.19 , pp. 2229-2232
    • Pineda, F.J.1
  • 29
    • 0037403516 scopus 로고    scopus 로고
    • Measurs of diversity in classifier ensembles and their relationship with the ensemble accuracy
    • (a)
    • L. Kuncheva and C. Whitaker, "Measurs of diversity in classifier ensembles and their relationship with the ensemble accuracy, '' Machine Learning, Vol. 51, pp. 181-207, 2003(a).
    • (2003) Machine Learning , vol.51 , pp. 181-207
    • Kuncheva, L.1    Whitaker, C.2
  • 30
    • 35048862917 scopus 로고    scopus 로고
    • That Elusive Diversity in Classifier Ensembles
    • Pattern Recognition and Image Analysis
    • L.I. Kuncheva, "That elusive diversity in classifier ensembles," Lecture Notes in Computer Science, LNCS 2652, pp. 1126-1138, 2003(b). (Pubitemid 36809919)
    • (2003) LECTURE NOTES IN COMPUTER SCIENCE , Issue.2652 , pp. 1126-1138
    • Kuncheva, L.I.1
  • 31
    • 33749018252 scopus 로고    scopus 로고
    • An analysis of diversity measures
    • DOI 10.1007/s10994-006-9449-2
    • E. K. Tang, P. N. Suganthan and X. Yao, "An analysis of diversity measures," Machine Learning, Vol. 65, pp. 247-271, 2006. (Pubitemid 44451200)
    • (2006) Machine Learning , vol.65 , Issue.1 , pp. 247-271
    • Tang, E.K.1    Suganthan, P.N.2    Yao, X.3
  • 32
    • 33749596030 scopus 로고    scopus 로고
    • Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
    • DOI 10.1016/j.jtbi.2006.06.014, PII S002251930600261X
    • S. Mondal, R. Bhavna, R. Mohan Babu and S. Ramakumar, "Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification," J. Theor. Biol., Vol. 243, pp. 252-260, 2006. (Pubitemid 44548567)
    • (2006) Journal of Theoretical Biology , vol.243 , Issue.2 , pp. 252-260
    • Mondal, S.1    Bhavna, R.2    Mohan Babu, R.3    Ramakumar, S.4
  • 33
    • 0031588694 scopus 로고    scopus 로고
    • Relation between amino acid composition and cellular location of proteins
    • DOI 10.1006/jmbi.1996.0804
    • J. Cedano, P. Aloy, J.A. P'erez-Pons and E. Querol, "Relation between amino acid composition and cellular location of proteins," J. Mol. Biol., Vol. 266, pp. 594-600, 1997. (Pubitemid 27117290)
    • (1997) Journal of Molecular Biology , vol.266 , Issue.3 , pp. 594-600
    • Cedano, J.1    Aloy, P.2    Perez-Pons, J.A.3    Querol, E.4
  • 34
    • 0032940342 scopus 로고    scopus 로고
    • Protein subcellular location prediction
    • K.C. Chou and D.W. Elrod, "Protein subcellular location prediction," Protein Eng., Vol. 12, pp. 107-118, 1999. (Pubitemid 29103689)
    • (1999) Protein Engineering , vol.12 , Issue.2 , pp. 107-118
    • Chou, K.-C.1    Elrod, D.W.2
  • 35
    • 0037233515 scopus 로고    scopus 로고
    • Subcellular location prediction of apoptosis proteins
    • DOI 10.1002/prot.10251
    • G.P. Zhou and K. Doctor, "Subcellular location prediction of apoptosis proteins," Proteins, Vol. 50, pp. 44-48, 2003. (Pubitemid 36090607)
    • (2003) Proteins: Structure, Function and Genetics , vol.50 , Issue.1 , pp. 44-48
    • Zhou, G.-P.1    Doctor, K.2
  • 37
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1) -D amino acid composition space
    • K.C. Chou, "A novel approach to predicting protein structural classes in a (20-1) -D amino acid composition space," Proteins Struct. Funct. Genet, Vol. 21, pp. 319-344, 1995.
    • (1995) Proteins Struct. Funct. Genet , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 38
    • 67650386131 scopus 로고
    • Multivariate Analysis, Academic Press, London Chapters 11-13
    • K.V. Mardia, J.T. Kent and J.M. Bibby, Multivariate Analysis, Academic Press, London, 1979, Chapters 11-13, pp. 322-381.
    • (1979) , pp. 322-381
    • Mardia, K.V.1    Kent, J.T.2    Bibby, J.M.3
  • 39
    • 0032940342 scopus 로고    scopus 로고
    • Protein subcellular location prediction
    • K.C. Chou and D.W. Elrod, "Protein subcellular location prediction," Protein Engineering, Vol. 12, no. 2, pp. 107-118, 1999. (Pubitemid 29103689)
    • (1999) Protein Engineering , vol.12 , Issue.2 , pp. 107-118
    • Chou, K.-C.1    Elrod, D.W.2
  • 40
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predeict enzyme subfamily classes
    • K.C. Chou, "Using amphiphilic pseudo amino acid composition to predeict enzyme subfamily classes," Bioinformatics, Vol. 21, pp. 10-19, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 41
    • 15844431346 scopus 로고    scopus 로고
    • PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
    • DOI 10.1093/bioinformatics/bti057
    • J.L. Gardy, M.R. Laird, F. Chen, S. Rey, C.J. Walsh, M. Ester, and F.S.L. Brinkman, "PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis," Bioinformatics, Vol. 21, no. 5, pp. 617-623, 2005. (Pubitemid 40424787)
    • (2005) Bioinformatics , vol.21 , Issue.5 , pp. 617-623
    • Gardy, J.L.1    Laird, M.R.2    Chen, F.3    Rey, S.4    Walsh, C.J.5    Ester, M.6    Brinkman, F.S.L.7


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