Detection of gene amplification by genomic hybridization to cDNA microarrays

Cancer Research

Volumn 60, Issue 4, 2000, Pages 799-802

  Heiskanen, Mervi A ^a   Bittner, Michael L ^a   Chen, Yidong ^a   Khan, Javed ^a   Adler, Karl E ^b   Trent, Jeffrey M ^a   Meltzer, Paul S ^a  

^a NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^b DUPONT COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CARCINOGENESIS; DNA DETERMINATION; DNA HYBRIDIZATION; GENE ACTIVATION; GENE AMPLIFICATION; GENE EXPRESSION; GENE MAPPING; GENE TARGETING; HUMAN; HUMAN CELL; ONCOGENE MYC; PRIORITY JOURNAL; TUMOR GROWTH;

CYCLIN-DEPENDENT KINASE 4; CYCLIN-DEPENDENT KINASES; DNA, COMPLEMENTARY; GENE AMPLIFICATION; GENES, ERBB-2; GENES, MYC; HUMANS; NUCLEIC ACID HYBRIDIZATION; ONCOGENES; PROTO-ONCOGENE PROTEINS; TUMOR CELLS, CULTURED;

EID: 0034652585     PISSN: 00085472     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (18)

1. Kallioniemi, A., Kallioniemi, O-P., Sudar, D., Rutovitz, D., Gray, J. W., Waldman, F., and Pinkel, D. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science (Washington DC), 258: 818-821, 1992.
2. Piper, J., Rutovitz, D., Sudar, D., Kallioniemi, A., Kallioniemi, O-P., Waldman, F. M., Gray, J. W., and Pinkel, D. Computer image analysis of comparative genomic hybridization. Cytometry, 19: 10-26, 1995.
3. Solinas-Toldo, S., Lampel, S., Stilgenbauer, S., Nickolenko, J., Benner, A., Dohner, H., Cremer, T., and Lichter, P. Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes Chromosomes Cancer, 20: 399-407, 1997.
4. Pinkel, D., Segraves, R., Sudar, D., Clark, S., Poole, I., Kowbel, D., Collins, C., Kuo, W. L., Chen, C., Zhai, Y., Dairkee, S. H., Ljung, B. M., Gray, J. W., and Albertson, D. G. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat. Genet., 2: 207-211, 1998.
5. Pollack, J. R., Perou, C. M., Alizadeh, A. A., Eisen, M. B., Pergamenschikov, A., Williams, C. F., Jeffrey, S. S., Holstein, D., and Brown, P. O. Genome-wide analysis of DNA copy number changes using cDNA microarrays. Nat. Genet., 23: 41-46, 1999.
6. Khan, J., Simon, R., Bittner, M., Chen, Y., Leighton, S. B., Pohida, T., Smith, P. D., Jiang, Y., Gooden, G. C., Trent, J. M., and Meltzer, P. S. Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays. Cancer Res., 58: 5009-5013, 1998.
7. Chen, Y., Dougherty, E. R., and Bittner, M. L. Ratio-based decisions and the quantitative analysis of cDNA microarray images. Biomed. Optics, 2: 364-374, 1997.
8. Barnett, V., and Lewis, T., Outliers in Statistical Data, Ed. 3, p. 216. New York: John Wiley and Sons, 1994.
9. Schwap, M., Varmus, H. E., Bishop, J. M., Grzeschik, K-H., Naylor, S. L., Sakaguchi, A. Y., Brodeur, B., and Trent, J. Chromosome localization in normal human cells and neuroblastomas of a gene related to C-MYC. Nature (Lond.), 308: 288-308, 1984.
10. Dalla-Favera, R., Wong-Staal, F., and Gallo, R. C. Oncogene amplification in promyelocytic leukemia cell line HL-60 and in primary leukaemic cells of the same patient. Nature (Loud.), 299: 61-63, 1982.
11. Alitalo, K., Schwab, M., Lin, C. C., Varmus, H. E., and Bishop, J. M. Homogeneously staining chromosomal regions contain amplified copes of an abundantly expressed cellular oncogene (C-MYC) in malignant neuroendocrine cells from a human colon carcinoma. Proc. Natl. Acad. Sci. USA, 80: 1707-1711, 1983.
12. Elkahloun, A., Bittner, M., Hoskins, K., Gemmil, R., and Meltzer, P. Molecular cytogenetic characterization and physical mapping of 12q13-15 amplification in human cancers. Genes Chromosomes Cancer, 17: 205-214, 1996.
13. Tommerup, N., and Vissing, H. Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders. Genomics, 27: 259-264, 1995.
14. Bobrow, M. N., Harris, T. D., Shaughessy, K. J., and Litt, G. J. Catalyzed reporter deposition, a novel method of signal amplification. Application to immunoassays. J. Immunol. Methods, 125: 279-285, 1989.
15. Raap, A. K., van de Corput, M. P. C., Vervenne, E. A. W., Gijlswijk, R. P. M., Tanke, H. J., and Wiegant, J. Ultrasensitive FISH using peroxidase-mediated deposition of biotin of fluorochrome tyramides. Hum. Mol. Genet., 4: 529-534, 1995.
16. Sakakura, C., Mori, T., Sakabe, T., Ariyama, Y., Shinomiya, T., Date, K., Hagiwara, A., Yamaguchi, T., Takahashi, T., Nakamura, Y., Abe, T., and Inazawa, J. Gains, losses, and amplifications of genomic materials in primary gastric cancers analyzed by comparative genomic hybridization. Genes Chromosomes Cancer, 24: 299-305, 1999.
17. Larramendy, M. L., Tarkkanen, M., Valle, J., Kivioja, A. H., Ervasti, H., Karaharju, E., Salmivalli, T., Elomaa, I., and Knuutila, S. Gains, losses, and amplifications of DNA sequences evaluated by comparative genomic hybridization in chondrosarcomas. Am. J. Pathol., 150: 685-691, 1997.
18. Knuutila, S., Bjorkqvist, A-M., Autio, K., Tarkkanen, M., Wolf, M., Monni, O., Szymanska, J., Larramendy, M. L., Tapper, J., Pere, H., El-Rifai, W., Hemmer, S., Wasenius, V-M., Vidgren, V., and Zhu, Y. DNA copy number amplifications in human neoplasms-a review of comparative genomic hybridization studies. Am. J. Pathol., 152: 1107-1123, 1998.