In vivo selection of kinase-responsive RNA elements controlling alternative splicing

Journal of Biological Chemistry

Volumn 284, Issue 24, 2009, Pages 16191-16201

  Li, Hongzhao ^a   Liu, Guodong ^a   Yu, Jiankun ^a   Cao, Wenguang ^a   Lobo, Vincent G ^a   Xie, Jiuyong ^a,b  

^a UNIVERSITY OF MANITOBA   (Canada)

^b NONE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMES; RNA;

ALTERNATIVE SPLICING; CULTURED CELL; FEEDBACK REGULATION; IN-VIVO; PRE-MRNA SPLICING; PROTEIN KINASE;

CALCIUM COMPOUNDS;

CALCIUM CALMODULIN DEPENDENT PROTEIN KINASE IV; CYCLIC AMP DEPENDENT PROTEIN KINASE;

ALTERNATIVE RNA SPLICING; ARTICLE; CELL CULTURE; CONTROLLED STUDY; CYCLIC AMP RESPONSIVE ELEMENT; DEPOLARIZATION; EXON; HUMAN; HUMAN CELL; IN VIVO STUDY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN MOTIF; REGULATORY MECHANISM; SIGNAL TRANSDUCTION; SILENCER ELEMENT;

EID: 67650240032     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M900393200     Document Type: Article

References (50)

1. Black, D. L. (2003) Annu. Rev. Biochem. 72, 291-336
2. Maniatis, T., and Tasic, B. (2002) Nature 418, 236-243
3. Shin, C., and Manley, J. L. (2004) Nat Rev. Mol. Cell Biol. 5, 727-738
4. Stamm, S. (2008) J. Biol. Chem. 283, 1223-1227
5. Xie, J. (2008) Biochim. Biophys. Acta 1779, 438-452
6. Xie, J., and Black, D. L. (2001) Nature 410, 936-939
7. Xie, J., Jan, C., Stoilov, P., Park, J., and Black, D. L. (2005) RNA 11, 1825-1834
8. Lee, J. A., Xing, Y., Nguyen, D., Xie, J., Lee, C. J., and Black, D. L. (2007) PLoS Biol 5, e4O
9. Yu, J., Hai, Y., Liu, G., Fang, T., Kung, S. K., and Xie, J. (2009) J. Biol. Chem. 284, 1505-1513
10. An, P., and Grabowski, P. J. (2007) PLoS Biol 5, e36
11. McKee, A. E., Neretti, N., Carvalho, L. E., Meyer, C. A., Fox, E. A., Brodsky, A. S., and Silver, P. A. (2007) Genome Biol. 8, R159
12. Küppers, E., Sabolek, M., Anders, U., Pilgrim, C., and Beyer, C. (2000) Brain Res. Mol. Brain Res. 81, 19-28
13. Berke, J. D., Sgambato, V., Zhu, P. P., Lavoie, B., Vincent, M., Krause, M., and Hyman, S. E. (2001) Neuron 32, 277-287
14. Sgambato, V., Minassian, R., Nairn, A. C., and Hyman, S. E. (2003) J. Neurochem. 86, 153-164
15. Kvissel, A. K., Ørstavik, S., Eikvar, S., Brede, G., Jahnsen, T., Collas, P., Akusjärvi, G., and Skl̊hegg. B.S. (2007) Exp. Cell Res. 313, 2795-2809
16. Smith, C. W., and Valcárcel, J. (2000) Trends Biochem Sci. 25, 381-388
17. Wang, Z., and Burge, C. B. (2008) RNA 14, 862-813
18. Goren, A., Ram, O., Amit, M., Keren, H., Lev-Maor, G., Vig, I., Pupko, T., and Ast, G. (2006) Mol. Cell 22, 769-781
19. Underwood, J. G., Boutz, P. L., Dougherty, J. D., Stoilov, P., and Black, D. L. (2005) Mol. Cell Biol. 25, 10005-10016
20. Matter, N., Herrlich, P., and König, H. (2002) Nature 420, 691-695
21. Rothrock, C., Cannon, B., Hahm, B., and Lynck K. W. (2003) Mol. Cell 12, 1317-1324
22. Hai, Y., Cao, W., Liu, G., Hong, S. P., Elela, S. A., Klinck, R., Chu, J., and Xie, J. (2008) Nucleic Acids Res. 36, 3320-3331
23. Coulter, L. R., Landree, M. A., and Cooper, T. A. (1997) Mol. Cell Biol. 17, 2143-2150
24. Stickeler, E., Fraser, S. D., Honig, A., Chen, A. L., Berget, S, M., and Cooper, T. A. (2001) EMBO J. 20, 3821-3830
25. Wang, Z., Rolish, M. E., Yeo, G., Tung, V., Mawson, M, and Burge, C. B. (2004) Cell 119, 831-845
26. Chatila, T., Anderson, K. A., Ho, N., and Means, A. R. (1996) J. Biol. Chem. 271, 21542-21548
27. Xie, J., Lee, J. A., Kress, T. L., Mowry, K. L., and Black, D. L. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 8776-8781
28. Zheng, J., Knighton, D. R., ten Eyck, L. F., Karlsson, R., Xuong, N., Taylor, S. S., and Sowadski, J. M. (1993) Biochemistry 32, 2154-2161
29. König, H., Ponta, H., and Herrlich, P. (1998) EMBO J. 17, 2904-2913
30. Modafferi, E. F., and Black, D. L. (1997) Mol. Cell. Biol. 17, 6537-6545
31. Kataoka, N., and Dreyfuss, G. (2008) Methods Mol. Biol. 488, 357-365
32. Piñol-Roma, S., Swanson, M. S., Gall, J. G., and Dreyfuss, G. (1989) J. Cell Biol. 109, 2575-2587
33. Bailey, T. L., Williams, N., Misleh, C., and Li, W. W. (2006) Nucleic Acids Res. 34, W369-373
34. Kim, N., Alekseyenko, A. V., Roy, M., and Lee, C. (2007) Nucleic Acids Res. 35, D93-98
35. Holste, D., Huo, G., Tung, V., and Burge, C. B. (2006) Nucleic Acids Res. 34, D56-62
36. Yeo, G. W., Van Nostrand, E., Holste, D., Poggio, T., and Burge, C. B. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 2850-2855
37. Dominski, Z., and Kole, R. (1991) Mol. Cell Biol. 11, 6075-6083
38. Ma, S., Liu, G., Sun, Y., and Xie, J. (2007) Biochim. Biophys. Acta 1773, 912-923
39. Dunster, K., Lai, F. P., and Sentry, J. W. (2005) Clin. Exp. Immunol. 140, 556-563
40. Hsu, L. S., Chen, G. D., Lee, L. S., Chi, C. W., Cheng, J. F., and Chen, J. Y. (2001) J. Biol. Chem. 276, 31113-31123
41. Feng, Y., Chen, M., and Manley, J. L. (2008) Nat. Struct. Mol. Biol. 15, 1040-1048
42. Yeo, G., and Burge, C. B. (2004) J. Comput. Biol. 11, 377-394
43. Bortfeldt, R., Herrmann, A., Pospisil, H., and Schuster, S. (2007) in Mathematical Modeling of Biological Systems (Deutsch, A. B., Byrne, H., de Vries, G., and Herzel, H., ed) Vol. 1, pp. 337-349, Birkhäuser, New York
44. West, A. E., Chen, W. G., Dalva, M. B., Dolmetsch, R. E., Kornhauser, J. M., Shaywitz, A. J., Takasu, M. A., Tao, X., and Greenberg, M. E. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 11024-11031
45. Soderling, T. R. (1999) Trends Biochem. Sci. 24, 232-236
46. Davare, M. A., Saneyoshi, T., Guire, E. S., Nygaard, S. C., and Soderling, T. R. (2004) J. Biol. Chem. 279, 52191-52199
47. Matsushita, M., and Nairn, A. C. (1999) J. Biol. Chem. 274, 10086-10093
48. Kitani, T., Okuno, S., and Fujisawa, H. (2001) J. Biochem. 130, 515-525
49. Okuno, S., Kitani, T., and Fujisawa, H. (2001) J. Biochem. 130, 503-513
50. Wayman, G. A., Tokumitsu, H., and Soderling, T. R. (1997) J. Biol. Chem. 272, 16073-16076