-
1
-
-
0035799707
-
Lethality and centrality in protein networks
-
10.1038/35075138 11333967
-
Albert R Jeong H Barabási AL Lethality and centrality in protein networks Nature 2001, 411:41-42 10.1038/35075138 11333967
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Albert, R.1
Jeong, H.2
Barabási, A.L.3
-
2
-
-
0034721164
-
Error and attack tolerance of complex networks
-
10.1038/35019019 10935628
-
Albert R Jeong H Barabási AL Error and attack tolerance of complex networks Nature 2000, 406:378-382 10.1038/35019019 10935628
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabási, A.L.3
-
3
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
10.1038/nrg1272 14735121
-
Barabási AL Oltvai ZN Network biology: Understanding the cell's functional organization Nat Rev Genet 2004, 5:101-113 10.1038/nrg1272 14735121
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
4
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
10.1038/30918 9623998
-
Watts DJ Strogatz SH Collective dynamics of 'small-world' networks Nature 1998, 393:440-442 10.1038/30918 9623998
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
5
-
-
0036610173
-
Evolution of networks
-
10.1080/00018730110112519
-
Dorogovtsev SN Mendes JFF Evolution of networks Adv Phys 2002, 51:1079-1187 10.1080/00018730110112519
-
(2002)
Adv Phys
, vol.51
, pp. 1079-1187
-
-
Dorogovtsev, S.N.1
Mendes, J.F.F.2
-
6
-
-
0038718854
-
The structure and function of complex networks
-
10.1137/S003614450342480
-
Newman MEJ The structure and function of complex networks SIAM Review 2003, 45:167-256 10.1137/S003614450342480
-
(2003)
SIAM Review
, vol.45
, pp. 167-256
-
-
Newman, M.E.J.1
-
7
-
-
27944493925
-
Scale-free networks in cell biology
-
10.1242/jcs.02714 16254242
-
Albert R Scale-free networks in cell biology J Cell Sci 2005, 118:4947-4957 10.1242/jcs.02714 16254242
-
(2005)
J Cell Sci
, vol.118
, pp. 4947-4957
-
-
Albert, R.1
-
9
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
218723 14517352 10.1073/pnas.2032324100
-
Spirin V Mirny LA Protein complexes and functional modules in molecular networks Proc Natl Acad Sci USA 2003, 100:12123-12128 218723 14517352 10.1073/pnas.2032324100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
12
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
10.1126/science.1073374 12202830
-
Ravasz E Somera AL Mongru DA Oltvai ZN Barabási AL Hierarchical organization of modularity in metabolic networks Science 2002, 297:1551-1555 10.1126/science.1073374 12202830
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabási, A.L.5
-
14
-
-
0036578795
-
Network motifs in the transcriptional network of Escherichia coli
-
10.1038/ng881 11967538
-
Shen-Orr SS Milo R Mangan S Alon U Network motifs in the transcriptional network of Escherichia coli Nat Genet 2002, 31:64-68 10.1038/ng881 11967538
-
(2002)
Nat Genet
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
15
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
10.1126/science.298.5594.824 12399590
-
Milo R Shen-Orr S Itzkovitz S Kashtan N Chklovskii D Alon U Network motifs: Simple building blocks of complex networks Science 2002, 298:824-827 10.1126/science.298.5594.824 12399590
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
-
16
-
-
1542287343
-
Superfamilies of evolved and designed networks
-
10.1126/science.1089167
-
Milo R Itzkovitz S Kashtan N Levitt R Shen-Orr S Ayzenshtat I Sheffer M Alon U Superfamilies of evolved and designed networks Science 2004, 5:1538-1542 10.1126/science.1089167
-
(2004)
Science
, vol.5
, pp. 1538-1542
-
-
Milo, R.1
Itzkovitz, S.2
Kashtan, N.3
Levitt, R.4
Shen-Orr, S.5
Ayzenshtat, I.6
Sheffer, M.7
Alon, U.8
-
17
-
-
0141484611
-
Evolutionary conservation of motif constituents in the yeast protein interaction network
-
10.1038/ng1242 12973352
-
Wuchty S Oltvai ZN Barabási AL Evolutionary conservation of motif constituents in the yeast protein interaction network Nat Genet 2003, 35:176-179 10.1038/ng1242 12973352
-
(2003)
Nat Genet
, vol.35
, pp. 176-179
-
-
Wuchty, S.1
Oltvai, Z.N.2
Barabási, A.L.3
-
18
-
-
2942552376
-
Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
-
357809 15018656 10.1186/1471-2105-5-10
-
Dobrin R Beg QK Barabási AL Oltvai ZN Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network BMC Bioinformatics 2004, 5:10 357809 15018656 10.1186/1471-2105-5-10
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 10
-
-
Dobrin, R.1
Beg, Q.K.2
Barabási, A.L.3
Oltvai, Z.N.4
-
19
-
-
11144248635
-
The topological relationship between the large-scale attributes and local interaction patterns of complex networks
-
539752 15598746 10.1073/pnas.0406024101
-
Vázquez A Dobrin R Sergi D Eckmann JP Oltvai ZN Barabási AL The topological relationship between the large-scale attributes and local interaction patterns of complex networks Proc Natl Acad Sci USA 2004, 101:17940-17945 539752 15598746 10.1073/pnas.0406024101
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17940-17945
-
-
Vázquez, A.1
Dobrin, R.2
Sergi, D.3
Eckmann, J.P.4
Oltvai, Z.N.5
Barabási, A.L.6
-
20
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
10.1038/nrg2102 17510665
-
Alon U Network motifs: Theory and experimental approaches Nat Rev Genet 2007, 8:450-461 10.1038/nrg2102 17510665
-
(2007)
Nat Rev Genet
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
21
-
-
0142027814
-
Structure and function of the feed-forward loop network motif
-
218699 14530388 10.1073/pnas.2133841100
-
Mangan S Alon U Structure and function of the feed-forward loop network motif Proc Natl Acad Sci USA 2003, 100:11980-11985 218699 14530388 10.1073/pnas.2133841100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11980-11985
-
-
Mangan, S.1
Alon, U.2
-
22
-
-
0242364231
-
The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks
-
10.1016/j.jmb.2003.09.049 14607112
-
Mangan S Zaslaver A Alon U The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks J Mol Biol 2003, 334:197-204 10.1016/j.jmb.2003.09.049 14607112
-
(2003)
J Mol Biol
, vol.334
, pp. 197-204
-
-
Mangan, S.1
Zaslaver, A.2
Alon, U.3
-
23
-
-
33746428728
-
A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli
-
1681456 16729041 10.1038/msb4100010
-
Kalir S Mangan S Alon U A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli Mol Syst Biol 2005, 1:2005.0006 1681456 16729041 10.1038/msb4100010
-
(2005)
Mol Syst Biol
, vol.1
-
-
Kalir, S.1
Mangan, S.2
Alon, U.3
-
24
-
-
44449128566
-
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
-
2396639 18454847
-
Potapov AP Goemann B Wingender E The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks BMC Bioinformatics 2008, 9:227 2396639 18454847
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 227
-
-
Potapov, A.P.1
Goemann, B.2
Wingender, E.3
-
25
-
-
33644877426
-
TRANSPATH®: An information resource for storing and visualizing signaling pathways and their pathological aberrations
-
1347469 16381929 10.1093/nar/gkj107
-
Krull M Pistor S Voss N Kel A Reuter I Kroneberg D Michael H Schwarzer K Potapov A Choi C Kel-Margoulis O Wingender E TRANSPATH®: An information resource for storing and visualizing signaling pathways and their pathological aberrations Nucleic Acids Res 2006, 34:D546-D551 1347469 16381929 10.1093/nar/gkj107
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Krull, M.1
Pistor, S.2
Voss, N.3
Kel, A.4
Reuter, I.5
Kroneberg, D.6
Michael, H.7
Schwarzer, K.8
Potapov, A.9
Choi, C.10
Kel-Margoulis, O.11
Wingender, E.12
-
26
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
1347505 16381825 10.1093/nar/gkj143
-
Matys V Kel-Margoulis OV Fricke E Liebich I Land S Barre-Dirrie A Reuter I Chekmenev D Krull M Hornischer K Voss N Stegmaier P Lewicki-Potapov B Saxel H Kel AE Wingender E TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes Nucleic Acids Res 2006, 34:D108-D110 1347505 16381825 10.1093/nar/gkj143
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
Barre-Dirrie, A.6
Reuter, I.7
Chekmenev, D.8
Krull, M.9
Hornischer, K.10
Voss, N.11
Stegmaier, P.12
Lewicki-Potapov, B.13
Saxel, H.14
Kel, A.E.15
Wingender, E.16
-
27
-
-
33646153295
-
FANMOD: A tool for fast network motif detection
-
10.1093/bioinformatics/btl038 16455747
-
Wernicke S Rasche F FANMOD: A tool for fast network motif detection Bioinformatics 2006, 22:1152-1153 10.1093/bioinformatics/btl038 16455747
-
(2006)
Bioinformatics
, vol.22
, pp. 1152-1153
-
-
Wernicke, S.1
Rasche, F.2
-
28
-
-
67650051301
-
-
FANMOD http://www.minet.uni-jena.de/~wernicke/motifs/
-
FANMOD
-
-
-
29
-
-
0032796421
-
Multiple control of flagellum biosynthesis in Escherichia coli: Role of H-NS protein and the cyclic AMP-catabolite activator protein complex in transcription of the flhDC master operon
-
94207 10601207
-
Soutourina O Kolb A Krin E Laurent-Winter C Rimsky S Danchin A Bertin P Multiple control of flagellum biosynthesis in Escherichia coli: Role of H-NS protein and the cyclic AMP-catabolite activator protein complex in transcription of the flhDC master operon J Bacteriol 1999, 181:7500-7508 94207 10601207
-
(1999)
J Bacteriol
, vol.181
, pp. 7500-7508
-
-
Soutourina, O.1
Kolb, A.2
Krin, E.3
Laurent-Winter, C.4
Rimsky, S.5
Danchin, A.6
Bertin, P.7
-
30
-
-
0027979044
-
The H-NS protein is involved in the biogenesis of flagella in Escherichia coli
-
196744 8071234
-
Bertin P Terao E Lee EH Lejeune P Colson C Danchin A Collatz E The H-NS protein is involved in the biogenesis of flagella in Escherichia coli J Bacteriol 1994, 176:5537-5540 196744 8071234
-
(1994)
J Bacteriol
, vol.176
, pp. 5537-5540
-
-
Bertin, P.1
Terao, E.2
Lee, E.H.3
Lejeune, P.4
Colson, C.5
Danchin, A.6
Collatz, E.7
-
31
-
-
0029992419
-
From acids to osmZ: Multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli
-
10.1111/j.1365-2958.1996.tb02532.x 8809744
-
Pratt LA Hsing W Gibson KE Silhavy TJ From acids to osmZ: Multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli Mol Microbiol 1996, 20:911-917 10.1111/j.1365-2958.1996.tb02532.x 8809744
-
(1996)
Mol Microbiol
, vol.20
, pp. 911-917
-
-
Pratt, L.A.1
Hsing, W.2
Gibson, K.E.3
Silhavy, T.J.4
-
32
-
-
0028879611
-
Rme1, a negative regulator of meiosis, is also a positive activator of G1 cyclin gene expression
-
394700 8846775
-
Toone WM Johnson AL Banks GR Toyn JH Stuart D Wittenberg C Johnston LH Rme1, a negative regulator of meiosis, is also a positive activator of G1 cyclin gene expression EMBO J 1995, 14:5824-5832 394700 8846775
-
(1995)
EMBO J
, vol.14
, pp. 5824-5832
-
-
Toone, W.M.1
Johnson, A.L.2
Banks, G.R.3
Toyn, J.H.4
Stuart, D.5
Wittenberg, C.6
Johnston, L.H.7
-
33
-
-
0028194848
-
Control of meiotic gene expression in Saccharomyces cerevisiae
-
372953 8177171
-
Mitchell AP Control of meiotic gene expression in Saccharomyces cerevisiae Microbiol Rev 1994, 58:56-70 372953 8177171
-
(1994)
Microbiol Rev
, vol.58
, pp. 56-70
-
-
Mitchell, A.P.1
-
34
-
-
0029006193
-
Positive control of yeast meiotic genes by the negative regulator UME6
-
230526 7760793
-
Bowdish KS Yuan HE Mitchell AP Positive control of yeast meiotic genes by the negative regulator UME6 Mol Cell Biol 1995, 15:2955-2961 230526 7760793
-
(1995)
Mol Cell Biol
, vol.15
, pp. 2955-2961
-
-
Bowdish, K.S.1
Yuan, H.E.2
Mitchell, A.P.3
-
35
-
-
0029990949
-
Induction of meiosis in Saccharomyces cerevisiae depends on conversion of the transcriptional represssor Ume6 to a positive regulator by its regulated association with the transcriptional activator Ime1
-
231241 8628320
-
Rubin-Bejerano I Mandel S Robzyk K Kassir Y Induction of meiosis in Saccharomyces cerevisiae depends on conversion of the transcriptional represssor Ume6 to a positive regulator by its regulated association with the transcriptional activator Ime1 Mol Cell Biol 1996, 16:2518-2526 231241 8628320
-
(1996)
Mol Cell Biol
, vol.16
, pp. 2518-2526
-
-
Rubin-Bejerano, I.1
Mandel, S.2
Robzyk, K.3
Kassir, Y.4
-
36
-
-
34147162118
-
ATP-dependent chromatin remodeling factors and DNA damage repair
-
1904433 17291544
-
Osley MA Tsukuda T Nickoloff JA ATP-dependent chromatin remodeling factors and DNA damage repair Mutat Res 2007, 618:65-80 1904433 17291544
-
(2007)
Mutat Res
, vol.618
, pp. 65-80
-
-
Osley, M.A.1
Tsukuda, T.2
Nickoloff, J.A.3
-
37
-
-
0033597892
-
Distinct regions of the Swi5 and Ace2 transcription factors are required for specific gene activation
-
10.1074/jbc.274.30.21029 10409653
-
McBride HJ Yu Y Stillman DJ Distinct regions of the Swi5 and Ace2 transcription factors are required for specific gene activation J Biol Chem 1999, 274:21029-21036 10.1074/jbc.274.30.21029 10409653
-
(1999)
J Biol Chem
, vol.274
, pp. 21029-21036
-
-
McBride, H.J.1
Yu, Y.2
Stillman, D.J.3
-
38
-
-
4043181214
-
Cancer genes and the pathways they control
-
10.1038/nm1087 15286780
-
Vogelstein B Kinzler KW Cancer genes and the pathways they control Nat Med 2004, 10:789-799 10.1038/nm1087 15286780
-
(2004)
Nat Med
, vol.10
, pp. 789-799
-
-
Vogelstein, B.1
Kinzler, K.W.2
-
39
-
-
0033036969
-
Transgenic rescue of congenital heart disease and spina bifida in Splotch mice
-
10226008
-
Li J Liu KC Jin F Lu MM Epstein JA Transgenic rescue of congenital heart disease and spina bifida in Splotch mice Development 1999, 126:2495-2503 10226008
-
(1999)
Development
, vol.126
, pp. 2495-2503
-
-
Li, J.1
Liu, K.C.2
Jin, F.3
Lu, M.M.4
Epstein, J.A.5
-
40
-
-
1842788016
-
Multiple feedback loops are key to a robust dynamic performance of tryptophan regulation in Escherichia coli
-
10.1016/S0014-5793(04)00310-2
-
Venkatesh KV Bhartiya S Ruhela A Multiple feedback loops are key to a robust dynamic performance of tryptophan regulation in Escherichia coli FEBS Lett 2004, 63:234-240 10.1016/S0014-5793(04)00310-2
-
(2004)
FEBS Lett
, vol.63
, pp. 234-240
-
-
Venkatesh, K.V.1
Bhartiya, S.2
Ruhela, A.3
-
41
-
-
27144517984
-
Interlinked fast and slow positive feedback loops drive reliable cell decisions
-
10.1126/science.1113834 16239477
-
Brandman O Ferrell JE Li R Meyer T Interlinked fast and slow positive feedback loops drive reliable cell decisions Science 2005, 310:496-498 10.1126/science.1113834 16239477
-
(2005)
Science
, vol.310
, pp. 496-498
-
-
Brandman, O.1
Ferrell, J.E.2
Li, R.3
Meyer, T.4
-
42
-
-
33748311990
-
Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast
-
10.1038/ng1869 16936734
-
Ramsey SA Smith JJ Orrell D Marelli M Petersen TW de Atauri P Bolouri H Aitchison JD Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast Nat Genet 2006, 38:1082-1087 10.1038/ng1869 16936734
-
(2006)
Nat Genet
, vol.38
, pp. 1082-1087
-
-
Ramsey, S.A.1
Smith, J.J.2
Orrell, D.3
Marelli, M.4
Petersen, T.W.5
de Atauri, P.6
Bolouri, H.7
Aitchison, J.D.8
-
43
-
-
33846694082
-
Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways
-
10.1002/bies.20511 17187378
-
Kim D Kwon YK Cho KH Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways BioEssays 2007, 29:85-90 10.1002/bies.20511 17187378
-
(2007)
BioEssays
, vol.29
, pp. 85-90
-
-
Kim, D.1
Kwon, Y.K.2
Cho, K.H.3
-
44
-
-
38349013623
-
Coupled feedback loops form dynamic motifs of cellular networks
-
2157222 17951298 10.1529/biophysj.107.105106
-
Kim JR Yoon Y Cho KH Coupled feedback loops form dynamic motifs of cellular networks Biophys J 2008, 94:359-365 2157222 17951298 10.1529/ biophysj.107.105106
-
(2008)
Biophys J
, vol.94
, pp. 359-365
-
-
Kim, J.R.1
Yoon, Y.2
Cho, K.H.3
-
45
-
-
28844434073
-
An evolutionary and functional assessment of regulatory network motifs
-
1088963 15833122 10.1186/gb-2005-6-4-r35
-
Mazurie A Bottani S Vergassola M An evolutionary and functional assessment of regulatory network motifs Genome Biology 2005, 6:R35 1088963 15833122 10.1186/gb-2005-6-4-r35
-
(2005)
Genome Biology
, vol.6
-
-
Mazurie, A.1
Bottani, S.2
Vergassola, M.3
-
46
-
-
38149046524
-
Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network
-
1847468 17408505 10.1186/1752-0509-1-1
-
Meshi O Shlomi T Ruppin E Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network BMC Syst Biol 2007, 1:1 1847468 17408505 10.1186/1752-0509-1-1
-
(2007)
BMC Syst Biol
, vol.1
, pp. 1
-
-
Meshi, O.1
Shlomi, T.2
Ruppin, E.3
-
47
-
-
52449085728
-
On the origin of distribution patterns of motifs in biological networks
-
2538512 18700017 10.1186/1752-0509-2-73
-
Konagurthu AS Lesk AM On the origin of distribution patterns of motifs in biological networks BMC Systems Biology 2008, 2:73-81 2538512 18700017 10.1186/1752-0509-2-73
-
(2008)
BMC Systems Biology
, vol.2
, pp. 73-81
-
-
Konagurthu, A.S.1
Lesk, A.M.2
|