Links between resources, C metabolism and the major components of bacterioplankton community structure across a range of freshwater ecosystems

Environmental Microbiology

Volumn 11, Issue 7, 2009, Pages 1704-1716

  Comte, Jérôme ^a   Del Giorgio, Paul A ^a  

^a UNIVERSITÉ DU QUÉBEC À MONTRÉAL   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; FRESH WATER;

ARTICLE; BACTERIUM; BIODIVERSITY; CANADA; CLASSIFICATION; COMPARATIVE STUDY; ECOSYSTEM; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; PLANKTON;

BACTERIA; BIODIVERSITY; CARBON; ECOSYSTEM; FRESH WATER; PLANKTON; QUEBEC;

EID: 67649911276     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2009.01897.x     Document Type: Article

References (55)

1. Alonso-Sáez, L., Arístegui, J., Pinhassi, J., Gómez-Consarnau, L., González, J.M., Vaqué, D., et al. (2007) Bacterial assemblage structure and carbon metabolism along a productivity gradient in the NE Atlantic Ocean. Aquat Microb Ecol 46 : 43 53. (Pubitemid 46293455)
2. Bertilsson, S., Eiler, A., Nordqvist, A. Jørgensen, N.O.G. (2007) Links between bacterial production, amino-acid utilization and community composition in productive lakes. ISME J 1 : 532 544. (Pubitemid 47530658)
3. Bouvier, T.C., del Giorgio, P.A. Gasol, J.M. (2007) A comparative study of the cytometric characteristics of High and Low nucleic-acid bacterioplankton cells from different aquatic ecosystems. Environ Microbiol 9 : 2050 2066. (Pubitemid 47057358)
4. Choi, K.H. Dobbs, F.C. (1999) Comparison of two kinds of Biolog microplates (GN and ECO) in their ability to distinguish among aquatic microbial communities. J Microbiol Methods 36 : 203 213. (Pubitemid 29222044)
5. Corno, G. Jürgens, K. (2008) Structural and functional patterns of bacterial communities in response to protist predation along an experimental productivity gradient. Environ Microbiol 10 : 2857 2871.
6. Cottrell, M.T. Kirchman, D.L. (2000) Natural assemblages of marine Proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular weight dissolved organic matter. Appl Environ Microbiol 66 : 1692 1697. (Pubitemid 30185652)
7. Covert, J.S. Moran, M.A. (2001) Molecular characterization of estuarine bacterial communities that use high- and low-molecular weight fractions of dissolved organic carbon. Aquat Microb Ecol 25 : 127 139. (Pubitemid 34253485)
8. Crump, B.C., Adams, H.E., Hobbie, J.E. Kling, G.W. (2007) Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment. Ecology 88 : 1365 1378. (Pubitemid 351345212)
9. Eiler, A., Langenheder, S., Bertilsson, S. Tranvik, L.J. (2003) Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl Environ Microbiol 69 : 3701 3709. (Pubitemid 36870021)
10. Fernàndez, A., Huang, S., Seston, S., Xing, J., Hickey, R., Criddle, C. Tiedje, J. (1999) How stable is stable? Function versus community composition. Appl Environ Microbiol 65 : 3697 3704. (Pubitemid 29399005)
11. Findlay, S.E.G. Sinsabaugh, R.L. (2003) Response of hyporheic biofilm metabolism and community structure to nitrogen amendments. Aquat Microb Ecol 33 : 127 133.
12. Findlay, S.E.G. Sinsabaugh, R.L. (2006) Large-scale variation in subsurface stream biofilms: a cross-regional comparison of metabolic function and community similarity. Microb Ecol 52 : 491 500. (Pubitemid 44899542)
13. Findlay, S.E.G., Sinsabaugh, R.L., Fischer, D.T. Franchini, P. (1998) Sources of dissolved organic carbon supporting planktonic bacterial production in the tidal freshwater Hudson River. Ecosystems 1 : 227 239. (Pubitemid 128664008)
14. Findlay, S.E.G., Sinsabaugh, R.L., Sobczak, W.V. Hoostal, M. (2003) Metabolic and structural response of hyporheic microbial communities to variations in supply of dissolved organic matter. Limnol Oceanogr 48 : 1608 1617. (Pubitemid 36964780)
15. Fuhrman, J.A. Azam, F. (1982) Thymidine incorporation as a measure of bacterioplankton production in marine surface waters: evaluation and field results. Mar Biol 66 : 109 120.
16. Fuhrman, J.A., Hewson, I., Schwalbach, M.S., Steele, J.A., Brown, M.V. Naeem, S. (2006) Annually reoccurring bacterial communities are predictable from ocean conditions. PNAS 103 : 13104 13109. (Pubitemid 44338923)
17. Garland, J.L. (1996) Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol Biochem 28 : 213 221.
18. Garland, J.L. Mills, A.L. (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level-sole-carbon-source-utilization. Appl Environ Microbiol 57 : 2351 2359.
19. Garland, J.L., Mills, A.L. Young, J.S. (2001) Relative effectiveness of kinetic analysis vs single point readings for classifying environmental samples based on community-level physiological profiles (CLPP). Soil Biol Biochem 33 : 1059 1066. (Pubitemid 32533126)
20. Gasol, J.M., Simons, A.M. Kalff, J. (1995) Patterns in the top-down versus bottom-up-regulation of heterotrophic nanoflagellates in temperate lakes. J Plankton Res 17 : 1879 1903. (Pubitemid 26454316)
21. Gasol, J.M., Zweifel, U.L., Peters, F., Fuhrman, J.A. Hagstrom, A. (1999) Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria. Appl Environ Microbiol 65 : 4475 4483.
22. del Giorgio, P.A. Bouvier, T.C. (2002) Linking the physiologic and phylogenetic successions in free-living bacterial communities along an estuarine salinity gradient. Limnol Oceanogr 47 : 471 486. (Pubitemid 34290313)
23. del Giorgio, P.A. Cole, J.J. (1998) Bacterial growth efficiency in natural aquatic system. Annu Rev Ecol Syst 29 : 503 541. (Pubitemid 29033041)
24. del Giorgio, P.A. Gasol, J.M. (2008) Physiological structure and single-cell activity in marine bacterioplankton. In Microbial Ecology of the Oceans, 2nd edn. Kirchman, D.L. (ed.). Hoboken, NJ, USA : John Wiley and Sons, pp. 243 298.
25. del Giorgio, P.A., Bird, D.F., Prairie, Y.T. Planas, D. (1996) Flow cytometric determination of bacterial abundance in lake plankton with the green nucleic acid stain SYTO 13. Limnol Oceanogr 41 : 783 789. (Pubitemid 26324538)
26. del Giorgio, P.A., Prairie, Y.T. Bird, D.F. (1997) Coupling between rates of bacterial production and the abundance of metabolically active bacteria in lakes, counted using CTC reduction and flow cytometry. Microb Ecol 34 : 144 154. (Pubitemid 27335851)
27. Glöckner, F.O., Fuchs, B. Amann, R. (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65 : 3721 3726. (Pubitemid 29399010)
28. Hooper, D.U., Chapin, F.S., Ewel, J.J., Hector, A., Inchausti, P., Lavorel, S., et al. (2005) Effects of biodiversity on ecosystem functioning: a consensus of current knowledge. Ecolog Monographs 75 : 3 35. (Pubitemid 40301269)
29. Judd, K.E., Crump, B.C. Kling, G.W. (2006) Variations in dissolved organic matter controls bacterial production and community composition. Ecology 87 : 2068 2079. (Pubitemid 44215732)
30. 2, and Ar in environmental water samples. Anal Chem 66 : 4166 4170. (Pubitemid 124006359)
31. Kent, A.D., Jones, S.E., Yannarell, A.C., Graham, J.H., Lauster, G.H., Kratz, T.K. Triplett, E.W. (2004) Annual patterns in bacterioplankton community variability in a humic lake. Microb Ecol 48 : 550 560. (Pubitemid 40564232)
32. Kent, A.D., Yannarrell, A.C., Rusak, J.A., Triplett, A.W. McMahon, K.D. (2007) Synchrony in aquatic microbial community dynamics. ISME J 1 : 28 47.
33. Kirchman, D.L. (1993) Leucine incorporation as a measure of biomass production by heterotrophic bacteria. In Handbook of Methods in Aquatic Microbial Ecology. Kemp, P.F., Sherr, B.F., Sherr, E.B Cole, J.J. (eds). Danvers, MA, USA : Lewis, pp. 509 512.
34. Kirchman, D.L., Ditell, A.I., Findlay, S.E.G. Fischer, D. (2004) Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York. Aquat Microb Ecol 35 : 243 257. (Pubitemid 39098802)
35. Konopka, A., Oliver, L. Turco, R.F. Jr. (1998) The use of carbon substrate utilization patterns in environmental and ecological microbiology. Microb Ecol 35 : 103 115. (Pubitemid 28190238)
36. Langenheder, S., Lindström, E.S. Tranvik, L.J. (2005) Weak coupling between community composition and functionning of aquatic bacteria. Limnol Oceanogr 50 : 957 967. (Pubitemid 40764381)
37. Lebaron, P., Parthuisot, N. Catala, P. (1998) Comparison of blue nucleic acid dyes for flow cytometric enumeration of bacteria in aquatic systems. Appl Environ Microbiol 64 : 1725 1730. (Pubitemid 28234776)
38. Lebaron, P., Servais, P., Baudoux, A.C., Bourrain, M., Courties, C. Parthuisot, N. (2002) Variations of bacterial-specific activity with cell size and nucleic acid content assessed by flow cytometry. Aquat Microb Ecol 28 : 131 140. (Pubitemid 34780558)
39. Lundin, A. (2000) Use of firefly luciferase in ATP-related assays of biomass, enzymes and metabolites. Methods Enzymol 305 : 346 371.
40. MacIntyre, S., Sickman, J.O., Goldthwait, S.A. Kling, G.W. (2006) Physical pathways of nutrient supply in a small, ultraoligotrophic arctic lake during summer stratification. Limnol Oceanogr 51 : 1107 1124.
41. Nelson, C.E. (2009) Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities. ISME J 3 : 13 30.
42. Nishimura, Y., Kim, C. Nagata, T. (2005) Vertical and seasonal variations of bacterioplankton subgroups with different nucleic acid contents: possible regulation by phosphorus. Appl Environ Microbiol 71 : 5828 5836. (Pubitemid 41456874)
43. Pace, M.L. Prairie, Y.T. (2005) Respiration in lakes. In Respiration in Aquatic Ecosystems. Chapter 7. del Giorgio, P.A. Williams, P.J.B. (eds). Oxford, New York, USA : Oxford University Press, 103 121.
44. Pace, M.L., del Giorgio, P.A., Fisher, D., Condon, R. Malcom, H. (2004) Estimates of bacterial production using the leucine incorporation method are influenced by differences in protein retention of microcentrifuge tubes. Limnol Oceanogr: Methods 2 : 55 61. (Pubitemid 43723722)
45. Peres-Neto, P.R. Jackson, D.A. (2001) How well do multivariate data sets match? The advantages of a Procrustean superimposition approach over the Mantel test. Oecologia 129 : 169 178. (Pubitemid 32996560)
46. Posch, T., Šimek, K., Vrba, J., Pernthaler, J., Nedoma, J., Sattler, B., et al. (1999) Predator-induced changes of bacterial size-structure and productivity studied on an experimental microbial community. Aquat Microb Ecol 18 : 235 246. (Pubitemid 29402929)
47. Schauer, M., Balagué, V., Pedrós-Alió, C. Massana, R. (2003) Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system. Aquat Microb Ecol 31 : 163 174. (Pubitemid 36391591)
48. Schultz, G.E. Ducklow, H. (2000) Changes in bacterioplankton metabolic capabilities along a salinity gradient in the York River estuary, Virginia, USA. Aquat Microb Ecol 22 : 163 174. (Pubitemid 34235220)
49. Shapiro, H.M. (2000) Membrane potential estimation by flow cytometry. Methods 21 : 271 279. (Pubitemid 32896751)
50. Šimek, K., Vrba, J., Pernthaler, J., Posch, T., Hartman, P., Nedoma, J. Psenner, R. (1997) Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Appl Environ Microbiol 63 : 587 595.
51. Smith, E.M. del Giorgio, P.A. (2003) Low fractions of active bacteria in natural aquatic communities? Aquat Microb Ecol 31 : 203 208. (Pubitemid 36391595)
52. Smith, E.M. Prairie, Y.T. (2004) Bacterial metabolism and growth efficiency in lakes: the importance of phosphorus availability. Limnol Oceanogr 49 : 137 147. (Pubitemid 38154295)
53. Stevenson, L.H. (1977) A case for bacterial dormancy in aquatic systems. Microb Ecol 4 : 127 133. (Pubitemid 9120009)
54. Trousselier, M., Courties, C., Lebaron, P. Servais, P. (1999) Flow cytometric discrimination of bacterial populations on seawater based on SYTO 13 staining of nucleic acids. FEMS Microbiol Ecol 29 : 319 330. (Pubitemid 29339091)
55. Yannarell, A.C. Triplett, E.W. (2005) Geographic and environmental sources of variation in lake bacterial community composition. Appl Environ Microbiol 71 : 227 239. (Pubitemid 40116272)