Repeated range expansion and glacial endurance of Potentilla glabra (Rosaceae) in the Qinghai-Tibetan Plateau

Journal of Integrative Plant Biology

Volumn 51, Issue 7, 2009, Pages 698-706

  Wang, Liu Yang ^a,b,d   Ikeda, Hiroshi ^c   Liu, Teng Liang ^b   Wang, Yu Jin ^a,b   Liu, Jian Quan ^b  

^a NORTHWEST INSTITUTE OF PLATEAU BIOLOGY   (China)

^b LANZHOU UNIVERSITY   (China)

^c UNIVERSITY OF TOKYO   (Japan)

^d UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Glacial refugia; Phylogeography; Potentilla glabra; Qinghai TibetanPlateau; Range expansion; trnT L

Indexed keywords

CHLOROPLAST DNA;

ALPINE ENVIRONMENT; CLADISTICS; CLIMATE OSCILLATION; COLD TOLERANCE; GENETIC DIFFERENTIATION; GENETIC VARIATION; GLACIAL ENVIRONMENT; HIERARCHICAL SYSTEM; LAST GLACIAL MAXIMUM; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION GENETICS; RANGE EXPANSION; REFUGIUM; VARIANCE ANALYSIS;

ARTICLE; CHINA; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; GROWTH, DEVELOPMENT AND AGING; HAPLOTYPE; ICE COVER; PHYLOGENY; POPULATION DYNAMICS; POTENTILLA;

CHINA; DNA, CHLOROPLAST; GENETIC VARIATION; GEOGRAPHY; HAPLOTYPES; ICE COVER; PHYLOGENY; POPULATION DYNAMICS; POTENTILLA; TIBET;

ASIA; CHINA; EURASIA; FAR EAST; QINGHAI-XIZANG PLATEAU;

POTENTILLA; ROSACEAE;

EID: 67649863776     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2009.00818.x     Document Type: Article

References (44)

1. Anderson LL, Hu FS, Nelson DM, Petit RJ, Paige KN (2006). Ice-age endurance: DNA evidence of a white spruce refugium in Alaska. Proc. Natl. Acad. Sci. USA 103, 12447-12450.
2. Avise JC (2000). Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, MA.
3. Avise JC (2004). Molecular Markers, Natural History and Evolution, 2nd edn. Sinauer Associates, Sunderland, MA.
4. Beerli P (2006). Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics 22, 341-345.
5. Cassens I, Mardulyn P, Milinkovitch MC (2005). Evaluating intraspecific 'network' construction methods using simulated sequence data: Do existing algorithms outperform the global maximum parsimony approach? Syst. Biol. 54, 363-372.
6. Chen KM, Abbott RJ, Milne RI, Tian XM, Liu JQ (2008a). Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China. Mol. Ecol. 19, 4276-4288.
7. Chen SY, Wu GL, Zhang DJ, Gao QB, Duan YZ, Zhang FQ et al. (2008b). Potential refugium on the Qinghai-Tibet Plateau revealed by the chloroplast DNA phylogeography of the alpine species Metagentiana striata (Gentianaceae). Bot. J. Linn. Soc. 157, 125-140.
8. Comes HP, Kadereit JW (1998). The effect of quaternary climatic changes on plant distribution and evolution. Trends Plant Sci. 3, 432-438.
9. Dupanloup I, Schneider S, Excoffier L (2002). A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11, 2571-2581.
10. Excoffier L, Laval G, Schneider S (2005). Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol. Bioinform. Online 1, 47-50.
11. Excoffier L, Smouse PE, Quattro JM (1992). Analyses of molecular variance inferred from metric distances among DNA haplotype: Application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
12. Fu YX (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking, and background selection. Genetics 147, 915-925.
13. Hewitt G (2000). The genetic legacy of the Quaternary ice ages. Nature 405, 907-913.
14. Hewitt GM (2004). Genetic consequences of climatic oscillations in the Quaternary. Philos. T. R. Soc. B. 359, 183-195.
15. Huairen Y, Xin X (1985). The influence of Quaternary climate on Chinese loess and desert. In: Li T, ed. Contribution to the Quaternary Glaciology and Quaternary Geology. Geological Publishing House, Beijing. pp. 126-134.
16. Huelsenbeck JP, Ronquist F (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17, 754-755.
17. Ikeda H, Senni K, Fujii N, Setoguchi H (2006). Refugia of Potentilla matsumurae (Rosaceae) located at high mountains in the Japanese archipelago. Mol. Ecol. 5, 3731-3740.
18. Johnson NK, Cicero C (2004). New mitochondrial DNA data affirm the importance of Pleistocene speciation in North American birds. Evolution 58, 1122-1130.
19. Klicka J, Zink RM (1997). The importance of recent ice ages in speciation: A failed paradigm. Science 277, 1666-1669.
20. Kuhner MK (2006). LAMARC 2.0: Maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22, 768-770.
21. Kuhner MK, Yamato J, Felsenstein J (1998). Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149, 429-434.
22. Meng LH, Yang R, Abbott RJ, George M, Hu TH, Liu JQ (2007). Mitochondrial and chloroplast phylogeography of Picea crassifolia Kom (Pinaceae) in the Qinghai-Tibetan Plateau and adjacent highlands. Mol. Ecol. 16, 4128-4137.
23. Polzin T, Daneschmand SV (2003). On Steiner trees and minimum spanning trees in hypergraphs. Oper. Res. Lett. 31, 12-20.
24. Pons O, Petit RJ (1995). Estimation variance and optimal sampling of gene diversity I. Haploid locus. Theor. Appl. Genet. 90, 462-470.
25. Pons O, Petit RJ (1996). Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics 144, 1237-1245.
26. Posada D, Crandall KA (1998). MODELTEST: Testing the model of DNA substitution. Bioinformatics 14, 817-818.
27. Rogers AR, Harpending H (1992). Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9, 552-569.
28. Ronquist F, Huelsenbeck JP (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
29. Shi YF, Li JJ, Li BY (1998). Uplift and Environmental Changes of Qinghai-Tibetan Plateau in the Late Cenozoic. Guangdong Science and Technology Press, Guangzhou, China.
30. Song BH, Wang XQ, Wang XR, Sun LJ, Hong DY, Peng PH (2002). Maternal lineages of Pinus densata, a diploid hybrid. Mol. Ecol. 11, 1057-1063.
31. Song BH, Wang XQ, Wang XR, Ding, KY, Hong DY (2003). Cytoplasmic composition in Pinus densata and population establishment of the diploid hybrid pine. Mol. Ecol. 12, 2995-3001.
32. Stehlik I, Blattner FR, Hokderegger R, Bachmann K (2002). Nunatak survival of the high Alpine plant Eritrichium nanum (L.) Gaudin in the central Alps during the ice ages. Mol. Ecol. 11, 2027-2036.
33. Swofford DL (2002). PAUP*: Phylogenetic Analyses Using Parsimony (* and Other Methods), Version 4. Sinauer & Associates, Sunderland, MA.
34. Taberlet P, Gielly L, Pautou G, Bouvet J (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17, 1105-1109.
35. Theodorakis CW (2003). Establishing causality between population genetic alterations and environmental contamination in aquatic organisms. Hum. Ecol. Risk Assess. 9, 37-58.
36. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997). The Clustal-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analyses tools. Nucleic Acids Res. 24, 4876-4882.
37. Weir JT, Schluter D (2007). The latitudinal gradient in recent speciation and extinction rates of birds and mammals. Science 315, 1574-1576.
38. Wu SG, Yang YP, Fei Y (1995). On the flora of the alpine region in the Qinghai-Xizang (Tibet) plateau. Acta Bot. Yunnan. 17, 233-25.
39. Wolfe KH, Li WH, Sharp PM (1987). Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. USA 84, 9054-9058.
40. Wright S (1978). Evolution and the Genetics of Populations 4. Variability Within and Among Natural Populations. University of Chicago Press, Chicago, IL.
41. Yang FS, Li YF, Ding X, Wang XQ (2008). Extensive population expansion of Pedicularis longiflora (Orobanchaceae) on the Qinghai-Tibetan Plateau and its correlation with the Quaternary climate change. Mol. Ecol. 17, 5135-5145.
42. Young ND, Healy J (2003). GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4, 1-6.
43. Zhang DF, Li FQ, Ben JM (2000). Eco-environmental effects of the Qinghai-Tibet Plateau uplift during the Quaternary in China. Environ. Geol. 39, 1352-1358.
44. Zhang Q, Chiang TY, George M, Liu JQ, Abbott RJ (2005). Phylogeography of the Qinghai-Tibetan Plateau endemic Juniperus przewalskii (Cupressaceae) inferred from chloroplast DNA sequence variation. Mol. Ecol. 14, 3513-3524.