-
1
-
-
0037337257
-
Agrobacterium-mediated plant transformation: The biology behind the "gene-jockeying" tool
-
Gelvin SB (2003) Agrobacterium-mediated plant transformation: The biology behind the "gene-jockeying" tool. Microbiol Mol Biol Rev 67:16-37.
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 16-37
-
-
Gelvin, S.B.1
-
2
-
-
0020393968
-
T-DNA of the Agrobacterium Ti and Ri plasmids
-
Bevan MW, Chilton MD (1982) T-DNA of the Agrobacterium Ti and Ri plasmids. Annu Rev Genet 16:357-384.
-
(1982)
Annu Rev Genet
, vol.16
, pp. 357-384
-
-
Bevan, M.W.1
Chilton, M.D.2
-
3
-
-
0020355419
-
Short direct repeats flank the T-DNA on a nopaline Ti plasmid
-
DOI 10.1073/pnas.79.20.6322
-
Yadav NS, Vanderleyden J, Bennett DR, Barnes WM, Chilton MD (1982) Short direct repeats flank the T-DNA on a nopaline Ti plasmid. Proc Natl Acad Sci USA 79:6322-6326. (Pubitemid 13214239)
-
(1982)
Proceedings of the National Academy of Sciences of the United States of America
, vol.79
, Issue.20 I
, pp. 6322-6326
-
-
Yadav, N.S.1
Vanderleyden, J.2
Bennett, D.R.3
-
4
-
-
0034487378
-
Agrobacterium and plant genes involved in T-DNA transfer and integration
-
Gelvin SB (2000) Agrobacterium and plant genes involved in T-DNA transfer and integration. Annu Rev Plant Physiol Plant Mol Biol 51:223-256.
-
(2000)
Annu Rev Plant Physiol Plant Mol Biol
, vol.51
, pp. 223-256
-
-
Gelvin, S.B.1
-
5
-
-
0019973717
-
Complementation analysis of Agrobacterium tumefaciens Ti plasmid mutations affecting oncogenicity
-
Klee HJ, Gordon MP, Nester EW (1982) Complementation analysis of Agrobacterium tumefaciens Ti plasmid mutations affecting oncogenicity. J Bacteriol 150:327-331. (Pubitemid 12075124)
-
(1982)
Journal of Bacteriology
, vol.150
, Issue.1
, pp. 327-331
-
-
Klee, H.J.1
Gordon, M.P.2
Nester, E.W.3
-
6
-
-
0019195919
-
Characterization of Tn904 insertions in octopine Ti plasmid mutants of Agrobacterium tumefaciens
-
Ooms G, Klapwijk PM, Poulis JA, Schilperoort RA (1980) Characterization of Tn904 insertions in octopine Ti plasmid mutants of Agrobacterium tumefaciens. J Bacteriol 144:82-91.
-
(1980)
J Bacteriol
, vol.144
, pp. 82-91
-
-
Ooms, G.1
Klapwijk, P.M.2
Poulis, J.A.3
Schilperoort, R.A.4
-
7
-
-
0021184767
-
A comparison of virulence determinants in an octopine Ti plasmid, a nopaline Ti plasmid, and an Ri plasmid by complementation analysis of Agrobacterium tumefaciens mutants
-
Hooykaas PJ, Hofker M, den Dulk-Ras H, Schilperoort RA (1984) A comparison of virulence determinants in an octopine Ti plasmid, a nopaline Ti plasmid, and an Ri plasmid by complementation analysis of Agrobacterium tumefaciens mutants. Plasmid 11:195-205. (Pubitemid 14052040)
-
(1984)
Plasmid
, vol.11
, Issue.3
, pp. 195-205
-
-
Hooykaas, P.J.J.1
Hofker, M.2
Den Dulk-Ras, H.3
Schilperoort, R.A.4
-
8
-
-
0019807917
-
Physical mapping ofDNAbase sequence homologies between an octopine and a nopaline Ti plasmid of Agrobacterium tumefaciens
-
Engler G, et al. (1981) Physical mapping ofDNAbase sequence homologies between an octopine and a nopaline Ti plasmid of Agrobacterium tumefaciens. JMol Biol 152:183-208.
-
(1981)
JMol Biol
, vol.152
, pp. 183-208
-
-
Engler, G.1
-
9
-
-
0021490554
-
Right 25 bp terminus sequence of the nopaline T-DNA is essential for and determines direction of DNA transfer from Agrobacterium to the plant genome
-
Wang K, Herrera-Estrella L, Van Montagu M, Zambryski P (1984) Right 25 bp terminus sequence of the nopaline T-DNA is essential for and determines direction of DNA transfer from Agrobacterium to the plant genome. Cell 38:455-462.
-
(1984)
Cell
, vol.38
, pp. 455-462
-
-
Wang, K.1
Herrera-Estrella, L.2
Van Montagu, M.3
Zambryski, P.4
-
10
-
-
0023044312
-
The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease
-
Yanofsky MF, et al. (1986) The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease. Cell 47:471-477.
-
(1986)
Cell
, vol.47
, pp. 471-477
-
-
Yanofsky, M.F.1
-
11
-
-
0026684777
-
The Agrobacterium tumefaciens virD3 gene is not essential for tumorigenicity on plants
-
Vogel AM, Das A (1992) The Agrobacterium tumefaciens virD3 gene is not essential for tumorigenicity on plants. J Bacteriol 174:5161-5164.
-
(1992)
J Bacteriol
, vol.174
, pp. 5161-5164
-
-
Vogel, A.M.1
Das, A.2
-
12
-
-
0027146636
-
Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: Analogy to bacterial conjugation
-
DOI 10.1073/pnas.90.24.11538
-
Pansegrau W, Schoumacher F, Hohn B, Lanka E (1993) Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: Analogy to bacterial conjugation. Proc Natl Acad Sci USA 90:11538-11542. (Pubitemid 24008674)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.24
, pp. 11538-11542
-
-
Pansegrau, W.1
Schoumacher, F.2
Hohn, B.3
Lanka, E.4
-
13
-
-
27144463959
-
Biogenesis, architecture, and function of bacterial type IV secretion systems
-
DOI 10.1146/annurev.micro.58.030603.123630
-
Christie PJ, Atmakuri K, Krishnamoorthy V, Jakubowski S, Cascales E (2005) Biogenesis, architecture, and function of bacterial type IV secretion systems. Annu Rev Microbiol 59:451-485. (Pubitemid 41507439)
-
(2005)
Annual Review of Microbiology
, vol.59
, pp. 451-485
-
-
Christie, P.J.1
Atmakuri, K.2
Krishnamoorthy, V.3
Jakubowski, S.4
Cascales, E.5
-
14
-
-
0024618071
-
Cooperative interaction of Agrobacterium VirE2 protein with single-stranded DNA: Implications for the T-DNA transfer process
-
Citovsky V, Wong ML, Zambryski P (1989) Cooperative interaction of Agrobacterium VirE2 protein with single-stranded DNA: Implications for the T-DNA transfer process. Proc Natl Acad Sci USA 86:1193-1197.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 1193-1197
-
-
Citovsky, V.1
Wong, M.L.2
Zambryski, P.3
-
15
-
-
0024007038
-
Agrobacterium tumefaciens virE operon encodes a single-stranded DNA-binding protein
-
Das A (1988) Agrobacterium tumefaciens virE operon encodes a single-stranded DNA-binding protein. Proc Natl Acad Sci USA 85:2909-2913.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 2909-2913
-
-
Das, A.1
-
16
-
-
0034602302
-
VirB/D4-dependent protein translocation from Agrobacterium into plant cells
-
DOI 10.1126/science.290.5493.979
-
Vergunst AC, et al. (2000) VirB/D4-dependent protein translocation from Agrobacterium into plant cells. Science 290:979-982. (Pubitemid 30813265)
-
(2000)
Science
, vol.290
, Issue.5493
, pp. 979-982
-
-
Vergunst, A.C.1
Schrammeijer, B.2
Den Dulk-Ras, A.3
De Vlaam, C.M.T.4
Regensburg-Tuink, T.J.G.5
Hooykaas, P.J.J.6
-
17
-
-
0026635789
-
Nuclear localization of Agrobacterium VirE2 protein in plant cells
-
Citovsky V, Zupan J, Warnick D, Zambryski P (1992) Nuclear localization of Agrobacterium VirE2 protein in plant cells. Science 256:1802-1805.
-
(1992)
Science
, vol.256
, pp. 1802-1805
-
-
Citovsky, V.1
Zupan, J.2
Warnick, D.3
Zambryski, P.4
-
19
-
-
0025598893
-
A bacterial peptide acting as a plant nuclear targeting signal: The amino-terminal portion of Agrobacterium VirD2 protein directs a β-galactosidase fusion protein into tobacco nuclei
-
Herrera-Estrella A, Van Montagu M, Wang K (1990) A bacterial peptide acting as a plant nuclear targeting signal: The amino-terminal portion of Agrobacterium VirD2 protein directs a β-galactosidase fusion protein into tobacco nuclei. Proc Natl Acad Sci USA 87:9534-9537. (Pubitemid 120016477)
-
(1990)
Proceedings of the National Academy of Sciences of the United States of America
, vol.87
, Issue.24
, pp. 9534-9537
-
-
Herrera-Estrella, A.1
Van Montagu, M.2
Wang, K.3
-
20
-
-
0026586047
-
The VirD2 protein of A. tumefaciens contains a C-terminal bipartite nuclear localization signal: Implications for nuclear uptake of DNA in plant cells
-
Howard EA, Zupan JR, Citovsky V, Zambryski PC (1992) The VirD2 protein of A. tumefaciens contains a C-terminal bipartite nuclear localization signal: Implications for nuclear uptake of DNA in plant cells. Cell 68:109-118.
-
(1992)
Cell
, vol.68
, pp. 109-118
-
-
Howard, E.A.1
Zupan, J.R.2
Citovsky, V.3
Zambryski, P.C.4
-
21
-
-
0035097843
-
Import of Agrobacterium T-DNA into plant nuclei: Two distinct functions of VirD2 and VirE2 proteins
-
DOI 10.1105/tpc.13.2.369
-
Ziemienowicz A, Merkle T, Schoumacher F, Hohn B, Rossi L (2001) Import of Agrobacterium T-DNA into plant nuclei: Two distinct functions of VirD2 and VirE2 proteins. Plant Cell 13:369-383. (Pubitemid 32207689)
-
(2001)
Plant Cell
, vol.13
, Issue.2
, pp. 369-383
-
-
Ziemienowicz, A.1
Merkle, T.2
Schoumacher, F.3
Hohn, B.4
Rossi, L.5
-
22
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso JM, et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301:653-657.
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
-
23
-
-
0020638050
-
Genetic analysis of T-DNA transcripts in nopaline crown galls
-
Joos H, et al. (1983) Genetic analysis of T-DNA transcripts in nopaline crown galls. Cell 32:1057-1067.
-
(1983)
Cell
, vol.32
, pp. 1057-1067
-
-
Joos, H.1
-
24
-
-
0019390652
-
Crown gall plant tumors of abnormal morphology, induced by Agrobacterium tumefaciens carrying mutated octopine Ti plasmids; Analysis of T-DNA functions
-
DOI 10.1016/0378-1119(81)90146-3
-
Ooms G, Hooykaas PJ, Moolenaar G, Schilperoort RA (1981) Grown gall plant tumors of abnormal morphology, induced by Agrobacterium tumefaciens carrying mutated octopine Ti plasmids: Analysis of T-DNA functions. Gene 14:33-50. (Pubitemid 11062742)
-
(1981)
Gene
, vol.14
, Issue.1-2
, pp. 33-50
-
-
Ooms, G.1
Hooykaas, P.J.J.2
Moolenaar, G.3
Schilperoort, R.A.4
-
25
-
-
0001695315
-
Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid
-
Peralta EG, Hellmiss R, Ream W (1986) Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid. EMBO J 5:1137-1142.
-
(1986)
EMBO J
, vol.5
, pp. 1137-1142
-
-
Peralta, E.G.1
Hellmiss, R.2
Ream, W.3
-
26
-
-
0024766983
-
Mutational analysis of the conserved domains of a T-region border repeat of Agrobacterium tumefaciens
-
van Haaren MJ, Sedee NJ, de Boer HA, Schilperoort RA, Hooykaas PJ (1989) Mutational analysis of the conserved domains of a T-region border repeat of Agrobacterium tumefaciens. Plant Mol Biol 13:523-531.
-
(1989)
Plant Mol Biol
, vol.13
, pp. 523-531
-
-
Van Haaren, M.J.1
Sedee, N.J.2
De Boer, H.A.3
Schilperoort, R.A.4
Hooykaas, P.J.5
-
27
-
-
0024388234
-
The Agrobacterium tumefaciens virC1 gene product binds to overdrive, a T-DNA transfer enhancer
-
Toro N, et al. (1989) The Agrobacterium tumefaciens virC1 gene product binds to overdrive, a T-DNA transfer enhancer. J Bacteriol 171:6845-6849. (Pubitemid 20006973)
-
(1989)
Journal of Bacteriology
, vol.171
, Issue.12
, pp. 6845-6849
-
-
Toro, N.1
Datta, A.2
Carmi, O.A.3
Young, C.4
Prusti, R.K.5
Nester, E.W.6
-
28
-
-
0024110720
-
Role of the overdrive sequence in T-DNA border cleavage in Agrobacterium
-
Toro N, Datta A, Yanofsky M, Nester E (1988) Role of the overdrive sequence in T-DNA border cleavage in Agrobacterium. Proc Natl Acad Sci USA 85:8558-8562.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 8558-8562
-
-
Toro, N.1
Datta, A.2
Yanofsky, M.3
Nester, E.4
-
29
-
-
34249061772
-
Agrobacterium ParA/MinD-like VirC1 spatially coordinates early conjugative DNA transfer reactions
-
DOI 10.1038/sj.emboj.7601696, PII 7601696
-
Atmakuri K, Cascales E, Burton OT, Banta LM, Christie PJ (2007) Agrobacterium ParA/MinD-like VirC1 spatially coordinates early conjugative DNA transfer reactions. EMBO J 26:2540-2551. (Pubitemid 46788322)
-
(2007)
EMBO Journal
, vol.26
, Issue.10
, pp. 2540-2551
-
-
Atmakuri, K.1
Cascales, E.2
Burton, O.T.3
Banta, L.M.4
Christie, P.J.5
-
30
-
-
0027480463
-
A superfamily of ATPases with diverse functions containing either classical or deviant ATP-binding motif
-
DOI 10.1006/jmbi.1993.1115
-
Koonin EV (1993) A superfamily of ATPases with diverse functions containing either classical or deviant ATP-binding motif. J Mol Biol 229:1165-1174. (Pubitemid 23091831)
-
(1993)
Journal of Molecular Biology
, vol.229
, Issue.4
, pp. 1165-1174
-
-
Koonin, E.V.1
-
32
-
-
1642409204
-
Agrobacterium-Mediated Transformation of Aspeigillus awamori in the Absence of Full-Length VirD2, VirC2, or VirE2 Leads to Insertion of Aberrant T-DNA Structures
-
DOI 10.1128/JB.186.7.2038-2045.2004
-
Michielse CB, Ram AF, Hooykaas PJ, van den Hondel CA (2004) Agrobacteriummediated transformation of Aspergillus awamori in the absence of full-length VirD2, VirC2, or VirE2 leads to insertion of aberrant T-DNA structures. J Bacteriol 186:2038-2045. (Pubitemid 38381191)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.7
, pp. 2038-2045
-
-
Michielse, C.B.1
Ram, A.F.J.2
Hooykaas, P.J.J.3
Van Den Hondel, C.A.M.J.J.4
-
33
-
-
0029007928
-
DNA processing reactions in bacterial conjugation
-
Lanka E, Wilkins BM (1995) DNA processing reactions in bacterial conjugation. Annu Rev Biochem 64:141-169.
-
(1995)
Annu Rev Biochem
, vol.64
, pp. 141-169
-
-
Lanka, E.1
Wilkins, B.M.2
-
34
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
DOI 10.1006/jmbi.1993.1489
-
Holm L, Sander C (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol 233:123-138. (Pubitemid 23288916)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.1
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
35
-
-
0028177303
-
DNA recognition by β-sheets in the Arc repressor-operator crystal structure
-
DOI 10.1038/367754a0
-
Raumann BE, Rould MA, Pabo CO, Sauer RT (1994) DNA recognition by β-sheets in the Arc repressor-operator crystal structure. Nature 367:754-757. (Pubitemid 24067731)
-
(1994)
Nature
, vol.367
, Issue.6465
, pp. 754-757
-
-
Raumann, B.E.1
Rould, M.A.2
Pabo, C.O.3
Sauer, R.T.4
-
36
-
-
0026641755
-
Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by beta-strands
-
Somers WS, Phillips SE (1992) Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by beta-strands. Nature 359:387-393.
-
(1992)
Nature
, vol.359
, pp. 387-393
-
-
Somers, W.S.1
Phillips, S.E.2
-
37
-
-
0039985836
-
The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator
-
DOI 10.1093/emboj/17.24.7404
-
Gomis-Ruth FX, et al. (1998) The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator. EMBO J 17:7404-7415. (Pubitemid 29002708)
-
(1998)
EMBO Journal
, vol.17
, Issue.24
, pp. 7404-7415
-
-
Xavier Gomis-Ruth, F.1
Sola, M.2
Acebo, P.3
Parraga, A.4
Guasch, A.5
Eritja, R.6
Gonzalez, A.7
Espinosa, M.8
Solar, G.D.9
Coll, M.10
-
38
-
-
34548046005
-
Ribbon-helix-helix transcription factors: Variations on a theme
-
DOI 10.1038/nrmicro1717, PII NRMICRO1717
-
Schreiter ER, Drennan CL (2007) Ribbon-helix- helix transcription factors: Variations on a theme. Nat Rev Microbiol 5:710-720. (Pubitemid 47278864)
-
(2007)
Nature Reviews Microbiology
, vol.5
, Issue.9
, pp. 710-720
-
-
Schreiter, E.R.1
Drennan, C.L.2
-
39
-
-
0033538514
-
Specific DNA recognition by F factor TraY involves β-sheet residues
-
Lum PL, Schildbach JF (1999) Specific DNA recognition by F factor TraY involves β-sheet residues. J Biol Chem 274:19644-19648. (Pubitemid 129519408)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.28
, pp. 19644-19648
-
-
Lum, P.L.1
Schildbach, J.F.2
-
40
-
-
0025021309
-
TraY proteins of F and related episomes are members of the Arc and Mnt repressor family
-
DOI 10.1016/0022-2836(90)90004-6
-
Bowie JU, Sauer RT (1990) TraY proteins of F and related episomes are members of the Arc and Mnt repressor family. J Mol Biol 211:5-6. (Pubitemid 20051000)
-
(1990)
Journal of Molecular Biology
, vol.211
, Issue.1
, pp. 5-6
-
-
Bowie, J.U.1
Sauer, R.T.2
-
41
-
-
4344610198
-
DNA binding properties of protein TrwA, a possible structural variant of the Arc repressor superfamily
-
DOI 10.1016/j.bbapap.2004.05.009, PII S1570963904001487
-
Moncalian G, de la Cruz F (2004) DNA binding properties of protein TrwA, a possible structural variant of the Arc repressor superfamily. Biochim Biophys Acta 1701:15-23. (Pubitemid 39140782)
-
(2004)
Biochimica et Biophysica Acta - Proteins and Proteomics
, vol.1701
, Issue.1-2
, pp. 15-23
-
-
Moncalian, G.1
De La Cruz, F.2
-
43
-
-
0035393302
-
Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
-
Luscombe NM, Laskowski RA, Thornton JM (2001) Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Res 29:2860-2874. (Pubitemid 32685051)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.13
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
44
-
-
0031830815
-
Minor groove-binding architectural proteins: Structure, function, and DNA recognition
-
DOI 10.1146/annurev.biophys.27.1.105
-
Bewley CA, Gronenborn AM, Clore GM (1998) Minor groove-binding architectural proteins: Structure, function, and DNA recognition. Annu Rev Biophys Biomol Struct 27:105-131. (Pubitemid 28286011)
-
(1998)
Annual Review of Biophysics and Biomolecular Structure
, vol.27
, pp. 105-131
-
-
Bewley, C.A.1
Gronenborn, A.M.2
Clore, G.M.3
-
45
-
-
0030770619
-
The relaxosome protein MobC promotes conjugal plasmid mobilization by extending DNA strand separation to the nick site at the origin of transfer
-
Zhang S, Meyer R (1997) The relaxosome protein MobC promotes conjugal plasmid mobilization by extending DNA strand separation to the nick site at the origin of transfer. Mol Microbiol 25:509-516. (Pubitemid 27373579)
-
(1997)
Molecular Microbiology
, vol.25
, Issue.3
, pp. 509-516
-
-
Zhang, S.1
Meyer, R.2
|