Biophotonics applications of nanometric apertures

International Journal of Materials and Product Technology

Volumn 34, Issue 4, 2009, Pages 488-506

  Wenger, Jérôme ^a   Gérard, Davy ^a   Lenne, Pierre Francois ^a   Rigneault, Hérve ^a   Bonod, Nicolas ^a   Popov, Evgeny ^a   Marguet, Didier ^b   Nelep, Constantin ^c   Ebbesen, Thomas W ^d  

^a AIX MARSEILLE UNIVERSITÉ   (France)

^b CENTRE D IMMUNOLOGIE DE MARSEILLE LUMINY   (France)

^c ECOLE POLYTECHNIQUE   (France)

^d UNIVERSITÉ LOUIS PASTEUR   (France)

Author keywords

Fluorescence microscopy; Nanometric apertures; Spectroscopy; Surface plasmons

Indexed keywords

FLUORESCENCE MICROSCOPY; SPECTROSCOPY; SURFACE PLASMONS;

BIO PHOTONICS; NANOMETRICS; NANOPHOTONIC DEVICES; SUBWAVELENGTH APERTURES;

PHOTONICS;

EID: 67649233821     PISSN: 02681900     EISSN: None     Source Type: Journal    
DOI: 10.1504/IJMPT.2009.025002     Document Type: Article

References (72)

1. Aslan, K., Gryczynski, I., Malicka, J., Matveeva, E., Lakowicz, J.R. and Geddes, C.D. (2005) 'Metal-enhanced fluorescence: an emerging tool in biotechnology', Curr. Op. Biotech., Vol. 16, pp.55-62.
2. Bacia, K., Kim, S.A. and Schwille, P. (2006) 'Fluorescence cross-correlation spectroscopy in living cells', Nat. Methods, Vol. 3, pp.83-89.
3. Barnes, W.L., Dereux, A. and Ebbesen, T.W. (2003) 'Surface plasmon subwavelength optics', Nature, Vol. 424, pp.824-830.
4. Betzig, E. and Chichester, R.J. (1993) 'Single molecules observed by near-field scanning optical microscopy', Science, Vol. 262, pp.1422-1425.
5. Blom, H., Kastrup, L. and Eggeling, C. (2006) 'Fluorescence fluctuation spectroscopy in reduced detection volumes', Curr. Pharm. Biotechnol., Vol. 7, pp.51-66.
6. Brinkmeier, M., Dijrre, K., Riebeseel, K. and Rigler, R. (1997) 'Confocal spectroscopy in microstructures', Biophy. Chem., Vol. 66, pp.229-239.
7. Brolo, A.G., Arctander, E., Gordon, R., Leathem, B. and Kavanagh, K.L. (2004b) 'Nanohole-enhanced raman scattering', NanoLett., Vol. 4, pp.2015-2018.
8. Brolo, A.G., Gordon, R., Leathem, B. and Kavanagh, K.L. (2004a) 'Surface plasmon sensor based on the enhanced light transmission through arrays of nanoholes in gold films', Langmuir, Vol. 20, pp.4813-4815.
9. Brolo, A.G., Kwok, S.C., Cooper, M.D., Moffitt, M.G., Wang, C-W., Gordon, R., Riordon, J. and Kavanagh, K.L. (2006) 'Surface plasmon-quantum dot coupling from arrays of nanoholes', J. Phys. Chem. B, Vol. 110, pp.8307-8313.
10. Brolo, A.G., Kwok, S.C., Moffitt, M.G., Gordon, R., Riordon, J. and Kavanagh, K.L. (2005) 'Enhanced fluorescence from arrays of nanoholes in a gold film', J. Am. Chem. Soc., Vol. 127, pp.14936-14941.
11. Craighead, H.G. (2006) 'Future lab-on-a-chip technologies for interrogating individual molecules', Nature, Vol. 442, pp.387-393.
12. Dahlin, A., Zach, M., Rindzevicius, T., K̈M, M., Sutherland, D.S. and Höök, F. (2005) 'Localized surface plasmon resonance sensing of lipid-membrane-mediated biorecognition events', J. Am. Chem. Soc., Vol. 127, pp.5043-5048.
13. Degiron, A., Lezec, H.J., Yamamoto, N. and Ebbesen, T.W. (2004) 'Optical transmission properties of a single subwavelength aperture in a real metal', Opt. Com., Vol. 239, pp.61-66.
14. Dintinger, J., Klein, S. and Ebbesen, T.W. (2006a) 'Molecule-surface plasmon interactions in hole arrays: enhanced absorption, refractive index changes, and all-optical switching', Adv. Mater, Vol. 18, pp.1267-1270.
15. Dintinger, J., Robel, I., Kamat, P.V., Genet, C. and Ebbesen, T.W. (2006b) 'Terahertz all-optical molecule-plasmon modulation', Adv. Mater., Vol. 18, pp.1645-1648.
16. Ebbesen T.W., Lezec, H.J., Ghaemi, H.F., Thio, T. and Wolff, P.A. (1998) 'Extraordinary optical transmission through subwavelength hole arrays', Nature, Vol. 391, pp.667-669.
17. Edel, J.B., Wu, M., Baird, B. and Craighead, H.G. (2005) 'High spatial resolution observation of single molecule dynamics in living cell membranes', Biophys. J., Vol. 88, pp.L43-L45.
18. Eigen, M. and Rigler, R. (1994) 'Sorting single molecules: application to diagnostics and evolutionary biotechnology', Proc. Natl. Acad. Sci. USA, Vol. 91, pp.5740-5747.
19. Fischer, U.C. (1986) 'Submicrometer aperture in a thin metal film as a probe of its microenvironment through enhanced light scattering and fluorescence', J. Opt. Soc. Am., Vol. B3, pp.1239-1244.
20. Foquet, M., Korlach, J., Zipfel, W.R., Webb, W.W. and Craighead, H.G. (2002) 'DNA fragment sizing by single molecule detection in submicrometer-sized closed fluidic channels', Anal. Chem., Vol. 74, pp.1415-1422.
21. Foquet, M., Korlach, J., Zipfel, W.R., Webb, W.W. and Craighead, H.G. (2004) 'Focal volume confinement by submicrometer-sized fluidic channels', Anal. Chem., Vol. 76, pp.1618-1626.
22. Gao, D., Chen, W., Mulchandani, A. and Schultz, J.S. (2007) 'Detection of tumor markers based on extinction spectra of visible light passing through gold nanoholes', Appl. Phys. Lett., Vol. 90, p.073901.
23. Genet, C. and Ebbesen, T.W. (2007) 'Light in tiny holes', Nature, Vol. 445, pp.39-46.
24. Hassler, K., Leutenegger, M., Rigler, P., Rao, R., Rigler, R., Gosch, M. and Lasser, T. (2005) 'Total internal reflection fluorescence correlation spectroscopy (TIR-FCS) with lowbackground and high countrate per molecule', Opt. Express, Vol. 13, pp.7415-7423.
25. Ishi, T., Fujikata, J., Makita, K., Baba, T. and Ohashi, K. (2005) 'Si nano-photodiode with a surface plasmon antenna', Jpn. J. Appl. Phys., Vol. 44, pp.L364-L366.
26. Joglekar, A.P., Liu, H., Meyhofer, E., Mourou, G. and Hunt, A.J. (2004) 'Optics at critical intensity: Applications to nanomorphing', Proc. Natl. Acad. Sci. USA, Vol. 101,pp.5856-5861.
27. Kastrup, L., Blom, H., Eggeling, C. and Hell, S.W. (2005) 'Fluorescence fluctuation spectroscopy in subdiffraction focal volumes', Phys. Rev. Lett., Vol. 94, p.178104.
28. Koltermann, A., Kettling, U., Bieschke, J., Winkler, T. and Eigen, M. (1998) 'Rapid assay processing by integration of dual-color fluorescence cross-correlation spectroscopy: high throughput screening for enzyme activity', Proc. Natl. Acad. Sci. USA, Vol. 95, pp.1421-1426.
29. Lakowicz, J.R. (2005) 'Radiative decay engineering 5: metal-enhanced fluorescence and plasmon emission', Anal. Biochem., Vol. 337, pp.171-194.
30. Lakowicz, J.R. (2006) 'Plasmonics in biology and plasmon-controlled fluorescence', Plasmonics, Vol. 1, pp.5-33.
31. Lakowicz, J.R., Malicka, J., Gryczynski, I., Gryczynski, Z. and Geddes, C.D. (2003) 'Radiative decay engineering: the role of photonic mode density in biotechnology', J. Phys. D: Appl. Phys., Vol. 36, pp.R240-R249.
32. Lenne, P.F., Colombo, D., Giovannini, H. and Rigneault, H. (2002) 'Flow profiles and directionality in microcapillaries measured by fluorescence correlation spectroscopy', Single Molecules, Vol. 3, pp.194-200.
33. Lenne, P.F., Etienne, E. and Rigneault, H. (2002) 'Subwavelength patterns and high detection efficiency in fluorescence correlation spectroscopy using photonic structures', Appl. Phys. Lett., Vol. 80, pp.4106-4108.
34. Lenne, P-F., Wawrezinieck, L., Conchonaud, F., Wurtz, O., Boned, A., Guo, X-J., Rigneault, H., He, H-T. and Marguet, D. (2006) 'Dynamic molecular confinement in the plasma membrane by microdomains and the cytoskeleton meshwork', EMBO J., Vol. 25,pp.3245-3256
35. Leutenegger, M., Gosch, M., Perentes, A., Hoffmann, P., Martin, O.J.F. and Lasser, T. (2006) 'Confining the sampling volume for fluorescence correlation spectroscopy using a sub-wavelength sized aperture', Opt. Express, Vol. 14, pp.956-969.
36. Levene, M.J., Korlach, J., Turner, S.W., Foquet, M., Craighead, H.G. and Webb, W.W. (2003) 'Zero-mode waveguides for single-molecule analysis at high concentrations', Science, Vol. 299, pp.682-686.
37. Lewis, A., Taha, H., Strinkovski, A., Menevitch, A., Katchatouriants, A., Dekhter, R. and Amman, E. (2003) 'Near-field optics: from subwavelength illumination to nanometric shadowing', NatureBiotechnol., Vol. 21, pp.1378-1386.
38. Lezec, H.J., Degiron, A., Devaux, E., Linke, R.A., Martin-Moreno, L., Garcia-Vidal, F.J., Ebbesen, T.W. (2002) 'Beaming light from a subwavelength aperture', Science, Vol. 297, pp.820-822.
39. Liu, C., Chen, N. and Sheppard, C. (2007) 'Nanoillumination based on self-focus and field enhancement inside a subwavelength metallic structure', Appl. Phys. Lett., Vol. 90, p.011501.
40. Liu, G.L., Kim, J., Lu, Y. and Lee, L.P. (2006) 'Fluorescence enhancement of quantum dots enclosed in Au nanopockets with subwavelength aperture', Appl. Phys. Lett., Vol. 89, p.241118.
41. Liu, Y. and Blair, S. (2003) 'Fluorescence enhancement from an array of subwavelength metal apertures', Opt. Lett., Vol. 28, pp.507-509.
42. Liu, Y. and Blair, S. (2004) 'Fluorescence transmission through 1-D and 2-D periodic metal films', Opt. Express, Vol. 12, pp.3686-3693.
43. Liu, Y., Bishop, J., Williams, L., Blair, S. and Herron, J. (2004) 'Biosensing based upon molecular confinement in metallic nanocavity arrays', Nanotechnology, Vol. 15, pp.1368-1374.
44. Liu, Y., Mahdavi, F. and Blair, S. (2005) 'Enhanced fluorescence transduction properties of metallic nanocavity arrays', IEEE J. Sel. Top. Quantum Electron., Vol. 11, pp.778-784.
45. Mahdavi, F. and Blair, S. (2006) 'Radiative enhancement from metallic nanocavities', Integrated Photonics Research and Applications/Nanophotonics 2006 Technical Digest, Optical Society of America, Washington, DC, NThE3.
46. Marguet, D., Lenne, P-F., Rigneault, H. and He, H-T. (2006) 'Dynamics in the plasma membrane: how to combine fluidity and order', EMBO J., Vol. 25, pp.3446-3457.
47. Nahata, A., Linke, R.A., Ishi, T. and Ohashi, K. (2003) 'Enhanced nonlinear optical conversion from a periodically nanostructured metal film', Opt. Lett., Vol. 28, pp.423-125.
48. Nie, S. and Emory, S.R. (1997) 'Probing single molecule and single nanoparticles by surface enhanced Raman scattering', Science, Vol. 275, pp.1102-1106.
49. Ozbay, E. (2006) 'Plasmonics: merging photonics and electronics at nanoscale dimensions', Science, Vol. 311, pp.189-193.
50. Perney, N.M.B., Baumberg, J.J., Zoorob, M.E., Charlton, M.D.B., Mahnkopf, S. and Netti, C.M.
51. (2006) 'Tuning localized plasmons in nanostructured substrates for surface-enhanced Raman scattering', Opt. Express, Vol. 14, pp.847-857.
52. Popov, E., Bonod, N., Nenievre, M., Rigneault, H., Lenne, P-F. and Chaumet, P. (2005) 'Surface plasmon excitation on a single subwavelength hole in a metallic sheet', Appl. Opt., Vol. 44, pp.2332-2337.
53. Popov, E., Neviere, M., Wenger, J., Lenne, P-F., Rigneault, H., Chaumet, P., Bonod, N., Dintinger, J. and Ebbesen, T.W. (2006) 'Field enhancement in single subwavelength apertures', J. Opt. Soc. Am. A, Vol. 23, pp.2342-2348.
54. Prikulis, J., Hanarp, P., Olofsson, L., Sutherland, D. and Kall, M. (2004) 'Optical spectroscopy of nanometric holes in thin gold films', NanoLett., Vol. 4, pp.1003-1007.
55. Rigler, R. and Elson, E.S. (2001) Fluorescence Correlation Spectroscopy, Theory and Applications, Springer, Berlin.
56. Rigneault, H., Capoulade, J., Dintinger, J., Wenger, J., Bonod, N., Popov, E., Ebbesen, T.W. and Lenne, P-F. (2005) 'Enhancement of single-molecule fluorescence detection in subwavelength apertures', Phys. Rev. Lett., Vol. 95, p.117401.
57. Rodriguez, K.R., Shah, S., Williams, S.M., Teeters-Kennedy, S. and Coe, J.V. (2004) 'Enhanced infrared absorption spectra of self-assembled alkanethiol monolayers using the extraordinary infrared transmission of metallic arrays of subwavelength apertures', J. Chem. Phys., Vol. 121, pp.8671-8675.
58. Samiee, K.T., Foquet, M., Guo, L., Cox, E.C. and Craighead, H.G. (2005) 'Lambda repressor oligomerization kinetics at high concentrations using fluorescence correlation spectroscopy in zero-mode waveguides', Biophys. J., Vol. 88, pp.2145-2153.
59. Samiee, K.T., Moran-Mirabal, J.M., Cheung, Y.K. and Craighead, H.G. (2006) 'Zero mode waveguides for single-molecule spectroscopy on lipid membranes', Biophys. J., Vol. 90, pp.3288-3299.
60. Synge, E.H. (1928) 'A suggested method for extending the microscopic resolution into the ultramicroscopic region', Philos. Mag., Vol. 6, pp.356-362.
61. Teeters-Kennedy, S.M., Rodriguez, K.R., Rogers, T.M., Zomchek, K.A., Williams, S.M., Sudnitsyn, A., Carter, L., Cherezov, V., Caffrey, M. and Coe, J.V. (2006) 'Controlling
62. the passage of light through metal microchannels by nanocoatings of phospholipids', J. Phys. Chem. B, Vol. 110, pp.21719-21727.
63. Thompson, N.L., Burghardt, T.P. and Axelrod, D. (1981) 'Measuring surface dynamics of biomolecules by total internal- reflection fluorescence with photobleaching recovery or correlation spectroscopy', Biophys. J., Vol. 33, pp.435-454.
64. Wawrezinieck, L., Rigneault, H., Marguet, D. and Lenne, P.F. (2005) 'Fluorescence correlation spectroscopy diffusion laws to probe the submicron cell membrane organization', Biophys. J., Vol. 89, pp.4029-4042.
65. Wenger, J., Conchonaud, F., Dintinger, J., Wawrezinieck, L., Ebbesen, T.W., Rigneault, H., Marguet, D. and Lenne, P.F. (2007) 'Diffusion analysis within single nanometric apertures reveals the ultrafine cell membrane organization', Biophys. J., Vol. 92, pp.913-919.
66. Wenger, J., Dintinger, J., Bonod, N., Popov, E., Lenne, P.F., Ebbesen, T.W. and Rigneault, H. (2006) 'Raman scattering and fluorescence emission in a single nanoaperture: optimizing the local intensity enhancement', Opt. Commun., Vol. 267, pp.224-228.
67. Wenger, J., Gerard, D., Lenne, P-F., Rigneault, H., Dintinger, J., Ebbesen, T.W., Boned, A., Conchonaud, F. and Marguet, D. (2006) 'Dual-color fluorescence cross-correlation spectroscopy in a single nanoaperture: towards rapid multicomponent screening at high concentrations', Opt. Express, Vol. 14, pp.12206-12216.
68. Wenger, J., Lenne, P-F., Popov, E., Rigneault, H., Dintinger, J. and Ebbesen, T.W. (2005) 'Single molecule fluorescence in rectangular nano-apertures', Opt. Express, Vol. 13, pp.7035-7044.
69. Wenger, J., Rigneault, H., Dintinger, J., Marguet, D. and Lenne, P.F. (2006) 'Single-fluorophore diffusion in a lipid membrane over a subwavelength aperture', J. Biol. Phys., Vol. 32, pp.SN1-SN4.
70. Williams, S.M., Rodriguez, K.R., Teeters-Kennedy, S., Stafford, A.D., Bishop, S.R., Lincoln, U.K. and Coe, J.V. (2004) 'Use of the extraordinary infrared transmission of metallic subwavelength arrays to study the catalyzed reaction of methanol to formaldehyde on copper oxide', J. Phys. Chem. B, Vol. 108, pp.11833-11837.
71. Winkler, T., Kettling, U., Koltermann, A. and Eigen, M. (1999) 'Confocal fluorescence coincidence analysis: an approach to ultra high throughput screening', Proc. Natl. Acad. Sci. USA, Vol. 96, pp.1375-1378.
72. Zander, C., Enderlein, J. and Keller, R.A. (Eds.) (2002) Single-Molecule Detection in Solution - Methods and Applications, VCH-Wiley, Berlin/New York.