-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
70349747510
-
-
American Public Health Association, American Water Works Association, Water Environment Federation (1998) Standard methods for the examination of water and wastewater. In: Franson, MAH (ed) American Public Health Association. Washington, DC, USA, pp 1134
-
American Public Health Association, American Water Works Association, Water Environment Federation (1998) Standard methods for the examination of water and wastewater. In: Franson, MAH (ed) American Public Health Association. Washington, DC, USA, pp 1134.
-
-
-
-
3
-
-
0036206050
-
Development, validation, and application of PCR primers for detection of tetracycline efflux genes of Gram-negative bacteria
-
Aminov RI, Chee-Sanford JC, Garrigues N, Teferedegne B, Krapac IJ, White BA, Mackie RI (2002) Development, validation, and application of PCR primers for detection of tetracycline efflux genes of Gram-negative bacteria. Appl Environ Microb 68:1786-1793.
-
(2002)
Appl Environ Microb
, vol.68
, pp. 1786-1793
-
-
Aminov, R.I.1
Chee-Sanford, J.C.2
Garrigues, N.3
Teferedegne, B.4
Krapac, I.J.5
White, B.A.6
Mackie, R.I.7
-
4
-
-
0035169057
-
Molecular ecology of tetracycline resistance: Development and validation of primers for detection of tetracycline resistance genes encoding ribosomal protection proteins
-
Aminov RI, Garrigues-Jeanjean N, Mackie RI (2001) Molecular ecology of tetracycline resistance: development and validation of primers for detection of tetracycline resistance genes encoding ribosomal protection proteins. Appl Environ Microb 67:22-32.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 22-32
-
-
Aminov, R.I.1
Garrigues-Jeanjean, N.2
Mackie, R.I.3
-
5
-
-
0034753334
-
Antimicrobial growth promoter ban and resistance to macrolides and vancomycin in Enterococci from pigs
-
Boerlin P, Wissing A, Aarestrup FM, Frey J, Nicolet J (2001) Antimicrobial growth promoter ban and resistance to macrolides and vancomycin in Enterococci from pigs. J Clin Microbiol 39:4193-4195.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 4193-4195
-
-
Boerlin, P.1
Wissing, A.2
Aarestrup, F.M.3
Frey, J.4
Nicolet, J.5
-
6
-
-
70349739821
-
-
Canadian Food Inspection Agency (2008) Compedium of medicating ingredient brochures (CMIB)
-
Canadian Food Inspection Agency (2008) Compedium of medicating ingredient brochures (CMIB) http://www.inspection.gc.ca/francais/anima/feebet/mib/drguse1f.shtml.
-
-
-
-
7
-
-
70349735128
-
-
Centre d'expertise en analyse environnementale du Québec (2003) Dénombrement des salmonelles: méthode par tubes multiples. MA. 700-Sal-tm 1.0, 19 pages
-
Centre d'expertise en analyse environnementale du Québec (2003) Dénombrement des salmonelles: méthode par tubes multiples. MA. 700-Sal-tm 1.0, 19 pages.
-
-
-
-
8
-
-
6344241314
-
Microbiological status of piggery effluents from 13 piggeries in the south east Queensland region of Australia
-
Chinivasagam HN, Thomas RJ, Casey K, McGahan E, Gardner EA, Rafiee M, Blackall PJ (2004) Microbiological status of piggery effluents from 13 piggeries in the south east Queensland region of Australia. J Appl Microbiol 97:883-891.
-
(2004)
J Appl Microbiol
, vol.97
, pp. 883-891
-
-
Chinivasagam, H.N.1
Thomas, R.J.2
Casey, K.3
McGahan, E.4
Gardner, E.A.5
Rafiee, M.6
Blackall, P.J.7
-
9
-
-
0034973583
-
Tetracyclines antibiotics: Mode of action, applications, molecular biology, and epidemiology of bacterial resistance
-
Chopra I, Roberts M (2001) Tetracyclines antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance. Microbiol Mol Biol Rev 65:232-260.
-
(2001)
Microbiol Mol Biol Rev
, vol.65
, pp. 232-260
-
-
Chopra, I.1
Roberts, M.2
-
10
-
-
14844297299
-
Ecosystem response to antibiotics entering the aquatic environment
-
Costanzo SD, Murby J, Bates J (2005) Ecosystem response to antibiotics entering the aquatic environment. Mar Poll Bull 51:218-223.
-
(2005)
Mar Poll Bull
, vol.51
, pp. 218-223
-
-
Costanzo, S.D.1
Murby, J.2
Bates, J.3
-
11
-
-
18444383704
-
Molecular analysis of human, porcine, and poultry Enterococcus faecium isolates and their erm(B) genes
-
De Leener E, Martel A, De Graef EM, Top J, Butaye P, Haesebrouck F, Willems R, Decostere A (2005) Molecular analysis of human, porcine, and poultry Enterococcus faecium isolates and their erm(B) genes. Appl Environ Microbiol 71:2766-2770.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2766-2770
-
-
De Leener, E.1
Martel, A.2
De Graef, E.M.3
Top, J.4
Butaye, P.5
Haesebrouck, F.6
Willems, R.7
Decostere, A.8
-
12
-
-
0036227992
-
Differentiation and identification of Enterococcus durans, E. hirae and E. villorum
-
Devriese LA, Vancanneyt M, Descheemaeker P, Baele M, van Landuyt HW, Gordts B, Butaye P, Swings J, Haesebrouck F (2002) Differentiation and identification of Enterococcus durans, E. hirae and E. villorum. J Appl Microbiol 92:821-827.
-
(2002)
J Appl Microbiol
, vol.92
, pp. 821-827
-
-
Devriese, L.A.1
Vancanneyt, M.2
Descheemaeker, P.3
Baele, M.4
van Landuyt, H.W.5
Gordts, B.6
Butaye, P.7
Swings, J.8
Haesebrouck, F.9
-
13
-
-
34548476479
-
Temporal dynamics and impact of manure storage on antibiotic resistance patterns and population structure of Escherichia coli isolates from a commercial swine farm
-
Duriez P, Topp E (2007) Temporal dynamics and impact of manure storage on antibiotic resistance patterns and population structure of Escherichia coli isolates from a commercial swine farm. Appl Environ Microbiol 73:5486-5493.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5486-5493
-
-
Duriez, P.1
Topp, E.2
-
14
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
-
Edwards U, Rogall T, Blöcker H, Emde M, Böttger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17:7843-7853.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blöcker, H.3
Emde, M.4
Böttger, E.C.5
-
15
-
-
31344459549
-
Antimicrobial-resistant bacteria in the community setting
-
Furuya EY, Lowy FD (2005) Antimicrobial-resistant bacteria in the community setting. Nature Rev Microbiol 4:36-45.
-
(2005)
Nature Rev Microbiol
, vol.4
, pp. 36-45
-
-
Furuya, E.Y.1
Lowy, F.D.2
-
16
-
-
0000803388
-
The population frequencies of species and the estimation of population of parameters
-
Good I (1953) The population frequencies of species and the estimation of population of parameters. Biometrika 40:237-264.
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.1
-
17
-
-
11244314292
-
Relationship between copper, glycopeptide, and macrolide resistance among Enterococcus faecium strains isolated from pigs in Denmark between 1997 and 2003
-
Hasman H, Aarestrup FM (2005) Relationship between copper, glycopeptide, and macrolide resistance among Enterococcus faecium strains isolated from pigs in Denmark between 1997 and 2003. Antimicrob Agents Chemother 49:454-456.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 454-456
-
-
Hasman, H.1
Aarestrup, F.M.2
-
18
-
-
0032408725
-
Microbial indicator reductions in alternative treatment systems for swine wastewater
-
Hill VR, Sobsey MD (1998) Microbial indicator reductions in alternative treatment systems for swine wastewater. Water Sci Technol 38:119-122.
-
(1998)
Water Sci Technol
, vol.38
, pp. 119-122
-
-
Hill, V.R.1
Sobsey, M.D.2
-
19
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber T, Faulkner G, Hugenholtz P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
20
-
-
12244279966
-
Molecular diversity and characterization of tetracycline-resistant Staphylococcus aureus isolates from a poultry processing plant
-
Huys G, D'Haene K, van Eldere J, von Holy A, Swings J (2005) Molecular diversity and characterization of tetracycline-resistant Staphylococcus aureus isolates from a poultry processing plant. Appl Environ Microbiol 71:574-579.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 574-579
-
-
Huys, G.1
D'Haene, K.2
van Eldere, J.3
von Holy, A.4
Swings, J.5
-
21
-
-
33750527346
-
Antimicrobial resistance: Implications for the food system
-
Institute of Food Technologists
-
Institute of Food Technologists (2006) Antimicrobial resistance: implications for the food system. Comp Rev Food Sci Food Safety 5:71-137.
-
(2006)
Comp Rev Food Sci Food Safety
, vol.5
, pp. 71-137
-
-
-
23
-
-
33744979944
-
Review of the use of aerobic thermophilic bioprocesses for the treatment of swine waste
-
Juteau P (2006) Review of the use of aerobic thermophilic bioprocesses for the treatment of swine waste. Livestock Sci 102:187-196.
-
(2006)
Livestock Sci
, vol.102
, pp. 187-196
-
-
Juteau, P.1
-
24
-
-
0346687725
-
Swine waste treatment by self-heating aerobic thermophilic bioreactors
-
Juteau P, Tremblay D, Ould-Moulaye C-B, Bisaillon J-G, Beaudet R (2004) Swine waste treatment by self-heating aerobic thermophilic bioreactors. Water Res 38:539-546.
-
(2004)
Water Res
, vol.38
, pp. 539-546
-
-
Juteau, P.1
Tremblay, D.2
Ould-Moulaye, C.-B.3
Bisaillon, J.-G.4
Beaudet, R.5
-
25
-
-
12444327259
-
Analysis of the bacterial community inhabiting an aerobic thermophilic sequencing batch reactor (AT-SBR) treating swine waste
-
Juteau P, Tremblay D, Villemur R, Bisaillon J-G, Beaudet R (2004) Analysis of the bacterial community inhabiting an aerobic thermophilic sequencing batch reactor (AT-SBR) treating swine waste. Appl Microbiol Biotechnol 66:115-122.
-
(2004)
Appl Microbiol Biotechnol
, vol.66
, pp. 115-122
-
-
Juteau, P.1
Tremblay, D.2
Villemur, R.3
Bisaillon, J.-G.4
Beaudet, R.5
-
27
-
-
33748693697
-
Transmission routes of Salmonella Typhimurium DT 104 between 14 cattle and pig herds in Denmark demonstrated by molecular fingerprinting
-
Langvad B, Skov MN, Rattenborg E, Olsen JE, Baggesen DL (2006) Transmission routes of Salmonella Typhimurium DT 104 between 14 cattle and pig herds in Denmark demonstrated by molecular fingerprinting. J Appl Microbiol 101:883-890.
-
(2006)
J Appl Microbiol
, vol.101
, pp. 883-890
-
-
Langvad, B.1
Skov, M.N.2
Rattenborg, E.3
Olsen, J.E.4
Baggesen, D.L.5
-
28
-
-
0035956602
-
Bacterial community dynamics in liquid swine manure during storage: Molecular analysis using DGGE/PCR of 16S rDNA
-
Leung K, Topp E (2001) Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA. FEMS Microbiol Ecol 38:169-177.
-
(2001)
FEMS Microbiol Ecol
, vol.38
, pp. 169-177
-
-
Leung, K.1
Topp, E.2
-
29
-
-
0036197197
-
Enterococcus faecium-related outbreak with molecular evidence of transmission from pigs to humans
-
Lu H-Z, Weng X-H, Li H, Yin Y-K, Pang M-Y, Tang YW (2002) Enterococcus faecium-related outbreak with molecular evidence of transmission from pigs to humans. J Clin Microbiol 40:913-917.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 913-917
-
-
Lu, H.-Z.1
Weng, X.-H.2
Li, H.3
Yin, Y.-K.4
Pang, M.-Y.5
Tang, Y.W.6
-
30
-
-
33646431953
-
Disinfection of swine wastewater using chlorine, ultraviolet light and ozone
-
Macauley JJ, Qiang Z, Adams CD, Surampalli R, Mormile MR (2006) Disinfection of swine wastewater using chlorine, ultraviolet light and ozone. Water Res 40:2017-2026.
-
(2006)
Water Res
, vol.40
, pp. 2017-2026
-
-
Macauley, J.J.1
Qiang, Z.2
Adams, C.D.3
Surampalli, R.4
Mormile, M.R.5
-
32
-
-
0033523872
-
An outbreak of multidrug-resistant, quinolone-resistant Salmonella enterica serotype typhimurium DT104
-
Molbak K, Baggessen DL, Aarestrup FM, Ebbesen JM, Engberg J, Frydendahl K, Gerner-Smidt P, Peterson AM, Wegener HC (1999) An outbreak of multidrug-resistant, quinolone-resistant Salmonella enterica serotype typhimurium DT104. N Engl J Med 341:1420-1425.
-
(1999)
N Engl J Med
, vol.341
, pp. 1420-1425
-
-
Molbak, K.1
Baggessen, D.L.2
Aarestrup, F.M.3
Ebbesen, J.M.4
Engberg, J.5
Frydendahl, K.6
Gerner-Smidt, P.7
Peterson, A.M.8
Wegener, H.C.9
-
33
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
34
-
-
70349745885
-
-
National Committee for Clinical Laboratory Standards (2002) Performance standards for antimicrobial disk and dilution susceptibility tests for bacteria isolated from animals: approved standard-second edition. NCCLS document M31-A2. NCCLS. NCCLS. Wayne, PA, USANCCLS
-
National Committee for Clinical Laboratory Standards (2002) Performance standards for antimicrobial disk and dilution susceptibility tests for bacteria isolated from animals: approved standard-second edition. NCCLS document M31-A2. NCCLS. NCCLS. Wayne, PA, USANCCLS.
-
-
-
-
35
-
-
2542480798
-
Prevalence and antimicrobial resistance of Campylobacter coli isolated from fattening pigs in France
-
Payot S, Dridi S, Laroche M, Federighi M, Magras C (2004) Prevalence and antimicrobial resistance of Campylobacter coli isolated from fattening pigs in France. Vet Microbiol 101:91-99.
-
(2004)
Vet Microbiol
, vol.101
, pp. 91-99
-
-
Payot, S.1
Dridi, S.2
Laroche, M.3
Federighi, M.4
Magras, C.5
-
36
-
-
34547181336
-
Response of antibiotic resistance genes (ARG) to biological treatment in dairy lagoon water
-
Pei R, Cha J, Carlson KH, Pruden A (2007) Response of antibiotic resistance genes (ARG) to biological treatment in dairy lagoon water. Environ Sci Technol 41:5108-5113.
-
(2007)
Environ Sci Technol
, vol.41
, pp. 5108-5113
-
-
Pei, R.1
Cha, J.2
Carlson, K.H.3
Pruden, A.4
-
37
-
-
33947243301
-
Characterization of the Prokaryotic diversity in cold saline perennial springs of the Canadian High Arctic
-
Perreault N, Andersen DT, Pollard WH, Greer CW, Whyte LG (2007) Characterization of the Prokaryotic diversity in cold saline perennial springs of the Canadian High Arctic. Appl Environ Microbiol 73:1532-1543.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1532-1543
-
-
Perreault, N.1
Andersen, D.T.2
Pollard, W.H.3
Greer, C.W.4
Whyte, L.G.5
-
38
-
-
17144412507
-
Update on acquired tetracycline resistance genes
-
Roberts MC (2005) Update on acquired tetracycline resistance genes. FEMS Microbiol Lett 245:195-203.
-
(2005)
FEMS Microbiol Lett
, vol.245
, pp. 195-203
-
-
Roberts, M.C.1
-
39
-
-
0032762933
-
Nomenclature for macrolide and macrolide-lincosamide-streptogramin B resistance determinants
-
Roberts MC, Sutcliffe J, Courvalin P, Jensen LB, Rood J, Seppala H (1999) Nomenclature for macrolide and macrolide-lincosamide-streptogramin B resistance determinants. Antimicrob Agents Chemother 43:2823-2830.
-
(1999)
Antimicrob Agents Chemother
, vol.43
, pp. 2823-2830
-
-
Roberts, M.C.1
Sutcliffe, J.2
Courvalin, P.3
Jensen, L.B.4
Rood, J.5
Seppala, H.6
-
40
-
-
0347360159
-
Use of mixed infections to study cell invasion and intracellular proliferation of Salmonella enterica in eukaryotic cell cultures
-
Segura I, Casadesùs J, Ramos-Morales F (2004) Use of mixed infections to study cell invasion and intracellular proliferation of Salmonella enterica in eukaryotic cell cultures. J Microbiol Methods 56:83-91.
-
(2004)
J Microbiol Methods
, vol.56
, pp. 83-91
-
-
Segura, I.1
Casadesùs, J.2
Ramos-Morales, F.3
-
41
-
-
0041547096
-
Bacterial antibiotic resistance levels in Danish farmland as a result of treatment with pig manure slurry
-
Sengeløv G, Agersø Y, Halling-Sørensen B, Baloda SB, Andersen JS, Jensen LB (2003) Bacterial antibiotic resistance levels in Danish farmland as a result of treatment with pig manure slurry. Environ Int 28:587-595.
-
(2003)
Environ Int
, vol.28
, pp. 587-595
-
-
Sengeløv, G.1
Agersø, Y.2
Halling-Sørensen, B.3
Baloda, S.B.4
Andersen, J.S.5
Jensen, L.B.6
-
42
-
-
15244351941
-
Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis
-
Snell-Castro R, Godon J-J, Delgenès J-P, Dabert P (2005) Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis. FEMS Microbiol Ecol 52:229-242.
-
(2005)
FEMS Microbiol Ecol
, vol.52
, pp. 229-242
-
-
Snell-Castro, R.1
Godon, J.-J.2
Delgenès, J.-P.3
Dabert, P.4
-
44
-
-
0029849428
-
Streptococcus pneumoniae and Streptococcus pyogenes resistant to macrolides but sensitive to clindamycin: A common resistance pattern mediated by an efflux system
-
Sutcliffe J, Tait-Kamradt A, Wondrack L (1996) Streptococcus pneumoniae and Streptococcus pyogenes resistant to macrolides but sensitive to clindamycin: a common resistance pattern mediated by an efflux system. Antimicrob Agents Chemother 40:1817-1824.
-
(1996)
Antimicrob Agents Chemother
, vol.40
, pp. 1817-1824
-
-
Sutcliffe, J.1
Tait-Kamradt, A.2
Wondrack, L.3
-
45
-
-
70349730657
-
-
US FDA (1998) Guidance for industry. Guide to minimize microbial food safety hazards for fresh fruits and vegetables. US Food and Drug Administration Report
-
US FDA (1998) Guidance for industry. Guide to minimize microbial food safety hazards for fresh fruits and vegetables. US Food and Drug Administration Report.
-
-
-
-
46
-
-
0032512458
-
Medical consequences of antibiotic use in agriculture
-
Witte W (1998) Medical consequences of antibiotic use in agriculture. Science 279:996-997.
-
(1998)
Science
, vol.279
, pp. 996-997
-
-
Witte, W.1
|