메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Identification of differentially expressed subnetworks based on multivariate ANOVA

Author keywords

[No Author keywords available]

Indexed keywords

EXPRESSION DATA; GENE EXPRESSION DATA; HIGHLY SENSITIVE DETECTIONS; HIGHLY-CORRELATED; HUMAN MICROARRAYS; MULTIVARIATE ANALYSIS OF VARIANCES; PROTEIN-PROTEIN INTERACTIONS; SEARCH ALGORITHMS;

EID: 67649208263     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-128     Document Type: Article
Times cited : (29)

References (26)
  • 1
    • 0141626917 scopus 로고    scopus 로고
    • The effect of replication on gene expression microarray experiments
    • 10.1093/bioinformatics/btg227 12967957
    • Pavlidis P Li Q Noble WS The effect of replication on gene expression microarray experiments Bioinformatics 2003, 19(13):1620-1627. 10.1093/ bioinformatics/btg227 12967957
    • (2003) Bioinformatics , vol.19 , Issue.13 , pp. 1620-1627
    • Pavlidis, P.1    Li, Q.2    Noble, W.S.3
  • 2
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • 10.1089/106652701300099074 11339905
    • Newton MA Kendziorski CM Richmond CS Blattner FR Tsui KW On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data J Comput Biol 2001, 8(1):37-52. 10.1089/106652701300099074 11339905
    • (2001) J Comput Biol , vol.8 , Issue.1 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 3
    • 0037433769 scopus 로고    scopus 로고
    • Statistical tests for identifying differentially expressed genes in time-course microarray experiments
    • 10.1093/bioinformatics/btg068 12691981
    • Park T Yi SG Lee S Lee SY Yoo DH Ahn JI Lee YS Statistical tests for identifying differentially expressed genes in time-course microarray experiments Bioinformatics 2003, 19(6):694-703. 10.1093/bioinformatics/ btg068 12691981
    • (2003) Bioinformatics , vol.19 , Issue.6 , pp. 694-703
    • Park, T.1    Yi, S.G.2    Lee, S.3    Lee, S.Y.4    Yoo, D.H.5    Ahn, J.I.6    Lee, Y.S.7
  • 4
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • 33173 11309499 10.1073/pnas.091062498
    • Tusher VG Tibshirani R Chu G Significance analysis of microarrays applied to the ionizing radiation response Proc Natl Acad Sci USA 2001, 98(9):5116-5121. 33173 11309499 10.1073/pnas.091062498
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.9 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 5
    • 26444608611 scopus 로고    scopus 로고
    • Discovering statistically significant pathways in expression profiling studies
    • 1200092 16174746 10.1073/pnas.0506577102
    • Tian L Greenberg SA Kong SW Altschuler J Kohane IS Park PJ Discovering statistically significant pathways in expression profiling studies Proc Natl Acad Sci USA 2005, 102(38):13544-13549. 1200092 16174746 10.1073/ pnas.0506577102
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.38 , pp. 13544-13549
    • Tian, L.1    Greenberg, S.A.2    Kong, S.W.3    Altschuler, J.4    Kohane, I.S.5    Park, P.J.6
  • 8
    • 34248593385 scopus 로고    scopus 로고
    • Gene expression network analysis and applications to immunology
    • 10.1093/bioinformatics/btm019 17267429
    • Nacu S Critchley-Thorne R Lee P Holmes S Gene expression network analysis and applications to immunology Bioinformatics 2007, 23(7):850-858. 10.1093/bioinformatics/btm019 17267429
    • (2007) Bioinformatics , vol.23 , Issue.7 , pp. 850-858
    • Nacu, S.1    Critchley-Thorne, R.2    Lee, P.3    Holmes, S.4
  • 9
    • 35348891430 scopus 로고    scopus 로고
    • Network-based classification of breast cancer metastasis
    • 2063581 17940530 10.1038/msb4100180
    • Chuang HY Lee E Liu YT Lee D Ideker T Network-based classification of breast cancer metastasis Mol Syst Biol 2007, 3:140. 2063581 17940530 10.1038/msb4100180
    • (2007) Mol Syst Biol , vol.3 , pp. 140
    • Chuang, H.Y.1    Lee, E.2    Liu, Y.T.3    Lee, D.4    Ideker, T.5
  • 10
    • 46249128543 scopus 로고    scopus 로고
    • Identifying functional modules in protein-protein interaction networks: An integrated exact approach
    • 10.1093/bioinformatics/btn161 18586718
    • Dittrich MT Klau GW Rosenwald A Dandekar T Muller T Identifying functional modules in protein-protein interaction networks: An integrated exact approach Bioinformatics 2008, 24(13):i223-231. 10.1093/ bioinformatics/btn161 18586718
    • (2008) Bioinformatics , vol.24 , Issue.13
    • Dittrich, M.T.1    Klau, G.W.2    Rosenwald, A.3    Dandekar, T.4    Muller, T.5
  • 11
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • 12169552
    • Ideker T Ozier O Schwikowski B Siegel AF Discovering regulatory and signalling circuits in molecular interaction networks Bioinformatics 2002, 18(Suppl 1):S233-240. 12169552
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 12
    • 20844450402 scopus 로고    scopus 로고
    • Differential network expression during drug and stress response
    • 10.1093/bioinformatics/bti440 15840709
    • Cabusora L Sutton E Fulmer A Forst CV Differential network expression during drug and stress response Bioinformatics 2005, 21(12):2898-2905. 10.1093/bioinformatics/bti440 15840709
    • (2005) Bioinformatics , vol.21 , Issue.12 , pp. 2898-2905
    • Cabusora, L.1    Sutton, E.2    Fulmer, A.3    Forst, C.V.4
  • 13
    • 34548583420 scopus 로고    scopus 로고
    • Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network
    • 10.1093/bioinformatics/btm294 17545181
    • Guo Z Li Y Gong X Yao C Ma W Wang D Zhu J Zhang M Yang D Wang J Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network Bioinformatics 2007, 23(16):2121-2128. 10.1093/bioinformatics/btm294 17545181
    • (2007) Bioinformatics , vol.23 , Issue.16 , pp. 2121-2128
    • Guo, Z.1    Li, Y.2    Gong, X.3    Yao, C.4    Ma, W.5    Wang, D.6    Zhu, J.7    Zhang, M.8    Yang, D.9    Wang, J.10
  • 14
    • 59149094468 scopus 로고    scopus 로고
    • Topological properties of protein interaction networks from a structural perspective
    • 10.1042/BST0361398 19021563
    • Gursoy A Keskin O Nussinov R Topological properties of protein interaction networks from a structural perspective Biochem Soc Trans 2008, 36(Pt 6):1398-1403. 10.1042/BST0361398 19021563
    • (2008) Biochem Soc Trans , vol.36 , Issue.PART 6 , pp. 1398-1403
    • Gursoy, A.1    Keskin, O.2    Nussinov, R.3
  • 15
    • 33847768378 scopus 로고    scopus 로고
    • Similar binding sites and different partners: Implications to shared proteins in cellular pathways
    • 10.1016/j.str.2007.01.007 17355869
    • Keskin O Nussinov R Similar binding sites and different partners: implications to shared proteins in cellular pathways Structure 2007, 15(3):341-354. 10.1016/j.str.2007.01.007 17355869
    • (2007) Structure , vol.15 , Issue.3 , pp. 341-354
    • Keskin, O.1    Nussinov, R.2
  • 16
    • 22244465254 scopus 로고    scopus 로고
    • Protein-protein interactions: Organization, cooperativity and mapping in a bottom-up Systems Biology approach
    • 10.1088/1478-3975/2/2/S03 16204846
    • Keskin O Ma B Rogale K Gunasekaran K Nussinov R Protein-protein interactions: Organization, cooperativity and mapping in a bottom-up Systems Biology approach Phys Biol 2005, 2(2):S24-35. 10.1088/1478-3975/ 2/2/S03 16204846
    • (2005) Phys Biol , vol.2 , Issue.2
    • Keskin, O.1    Ma, B.2    Rogale, K.3    Gunasekaran, K.4    Nussinov, R.5
  • 17
    • 34447288741 scopus 로고    scopus 로고
    • Towards drugs targeting multiple proteins in a systems biology approach
    • 10.2174/156802607780906690 17508925
    • Keskin O Gursoy A Ma B Nussinov R Towards drugs targeting multiple proteins in a systems biology approach Curr Top Med Chem 2007, 7(10):943-951. 10.2174/156802607780906690 17508925
    • (2007) Curr Top Med Chem , vol.7 , Issue.10 , pp. 943-951
    • Keskin, O.1    Gursoy, A.2    Ma, B.3    Nussinov, R.4
  • 18
    • 48649090754 scopus 로고    scopus 로고
    • Prostate cancer induces bone metastasis through Wnt-induced bone morphogenetic protein-dependent and independent mechanisms
    • 10.1158/0008-5472.CAN-07-6541 18632632
    • Dai J Hall CL Escara-Wilke J Mizokami A Keller JM Keller ET Prostate cancer induces bone metastasis through Wnt-induced bone morphogenetic protein-dependent and independent mechanisms Cancer Res 2008, 68(14):5785-5794. 10.1158/0008-5472.CAN-07-6541 18632632
    • (2008) Cancer Res , vol.68 , Issue.14 , pp. 5785-5794
    • Dai, J.1    Hall, C.L.2    Escara-Wilke, J.3    Mizokami, A.4    Keller, J.M.5    Keller, E.T.6
  • 19
    • 34447272058 scopus 로고    scopus 로고
    • Mechanisms of metastasis: Epithelial-to-mesenchymal transition and contribution of tumor microenvironment
    • 10.1002/jcb.21215 17243120
    • Tse JC Kalluri R Mechanisms of metastasis: Epithelial-to-mesenchymal transition and contribution of tumor microenvironment J Cell Biochem 2007, 101(4):816-829. 10.1002/jcb.21215 17243120
    • (2007) J Cell Biochem , vol.101 , Issue.4 , pp. 816-829
    • Tse, J.C.1    Kalluri, R.2
  • 20
    • 34247217200 scopus 로고    scopus 로고
    • Hubs in biological interaction networks exhibit low changes in expression in experimental asthma
    • 1865580 17437023 10.1038/msb4100138
    • Lu X Jain VV Finn PW Perkins DL Hubs in biological interaction networks exhibit low changes in expression in experimental asthma Mol Syst Biol 2007, 3:98. 1865580 17437023 10.1038/msb4100138
    • (2007) Mol Syst Biol , vol.3 , pp. 98
    • Lu, X.1    Jain, V.V.2    Finn, P.W.3    Perkins, D.L.4
  • 21
    • 35748954038 scopus 로고    scopus 로고
    • Construction of a reference gene association network from multiple profiling data: Application to data analysis
    • 10.1093/bioinformatics/btm423 17846039
    • Ucar D Neuhaus I Ross-MacDonald P Tilford C Parthasarathy S Siemers N Ji RR Construction of a reference gene association network from multiple profiling data: Application to data analysis Bioinformatics 2007, 23(20):2716-2724. 10.1093/bioinformatics/btm423 17846039
    • (2007) Bioinformatics , vol.23 , Issue.20 , pp. 2716-2724
    • Ucar, D.1    Neuhaus, I.2    Ross-MacDonald, P.3    Tilford, C.4    Parthasarathy, S.5    Siemers, N.6    Ji, R.R.7
  • 24
    • 19344363035 scopus 로고    scopus 로고
    • Gene expression signature of fibroblast serum response predicts human cancer progression: Similarities between tumors and wounds
    • 314300 14737219 10.1371/journal.pbio.0020007
    • Chang HY Sneddon JB Alizadeh AA Sood R West RB Montgomery K Chi JT Rijn van de M Botstein D Brown PO Gene expression signature of fibroblast serum response predicts human cancer progression: Similarities between tumors and wounds PLoS Biol 2004, 2(2):E7. 314300 14737219 10.1371/ journal.pbio.0020007
    • (2004) PLoS Biol , vol.2 , Issue.2
    • Chang, H.Y.1    Sneddon, J.B.2    Alizadeh, A.A.3    Sood, R.4    West, R.B.5    Montgomery, K.6    Chi, J.T.7    Rijn, M.8    Botstein, D.9    Brown, P.O.10
  • 25
    • 40149091137 scopus 로고    scopus 로고
    • Modeling cancer progression via pathway dependencies
    • 2242820 18282083 10.1371/journal.pcbi.0040028
    • Edelman EJ Guinney J Chi JT Febbo PG Mukherjee S Modeling cancer progression via pathway dependencies PLoS Comput Biol 2008, 4(2):e28. 2242820 18282083 10.1371/journal.pcbi.0040028
    • (2008) PLoS Comput Biol , vol.4 , Issue.2
    • Edelman, E.J.1    Guinney, J.2    Chi, J.T.3    Febbo, P.G.4    Mukherjee, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.