-
1
-
-
33846065036
-
Oxygen content of transmembrane proteins over macroevolutionary time scales
-
DOI 10.1038/nature05450, PII NATURE05450
-
C Acquisti J Kleffe S Collins 2007 Oxygen content of transmembrane proteins over macroevolutionary time scales Nature 445 47 52 (Pubitemid 46067297)
-
(2007)
Nature
, vol.445
, Issue.7123
, pp. 47-52
-
-
Acquisti, C.1
Kleffe, J.2
Collins, S.3
-
2
-
-
0041817645
-
Translational selection and yeast proteome evolution
-
H Akashi 2003 Translational selection and yeast proteome evolution Genetics 164 1291 1303 (Pubitemid 37102197)
-
(2003)
Genetics
, vol.164
, Issue.4
, pp. 1291-1303
-
-
Akashi, H.1
-
4
-
-
18444379063
-
Evidence of selection for low cognate amino acid bias in amino acid biosynthetic enzymes
-
DOI 10.1111/j.1365-2958.2005.04566.x
-
R Alves MA Savageau 2005 Evidence of selection for low cognate amino acid bias in amino acid biosynthetic enzymes Mol Microbiol 56 1017 1034 (Pubitemid 40646772)
-
(2005)
Molecular Microbiology
, vol.56
, Issue.4
, pp. 1017-1034
-
-
Alves, R.1
Savageau, M.A.2
-
6
-
-
13444283846
-
Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae
-
DOI 10.1093/nar/gkh978
-
Y Chen D Xu 2004 Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae Nucleic Acids Res 32 6414 6424 (Pubitemid 40202100)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.21
, pp. 6414-6424
-
-
Chen, Y.1
Xu, D.2
-
7
-
-
0032087026
-
Selection costs of amino acid substitutions in ColE1 and ColIa gene clusters harbored by Escherichia coli
-
CL Craig RS Weber 1998 Selection costs of amino acid substitutions in ColE1 and ColIa gene clusters harbored by Escherichia coli Mol Biol Evol 15 774 776
-
(1998)
Mol Biol Evol
, vol.15
, pp. 774-776
-
-
Craig, C.L.1
Weber, R.S.2
-
9
-
-
0014211361
-
Construction of phylogenetic trees
-
WM Fitch E Margoliash 1967 Construction of phylogenetic trees Science 155 279 284
-
(1967)
Science
, vol.155
, pp. 279-284
-
-
Fitch, W.M.1
Margoliash, E.2
-
10
-
-
0013770047
-
Oscillations of glycolytic intermediates in yeast cells
-
A Ghosh B Chance 1964 Oscillations of glycolytic intermediates in yeast cells Biochem Biophys Res Commun 16 174 181
-
(1964)
Biochem Biophys Res Commun
, vol.16
, pp. 174-181
-
-
Ghosh, A.1
Chance, B.2
-
11
-
-
0037457491
-
Free intracellular amino acid pools during autonomous oscillations in saccharomyces cerevisiae
-
DOI 10.1002/bit.10553
-
MA Hans E Heinzle C Wittmann 2003 Free intracellular amino acid pools during autonomous oscillations in Saccharomyces cerevisiae Biotechnol Bioeng 82 143 151 (Pubitemid 36362915)
-
(2003)
Biotechnology and Bioengineering
, vol.82
, Issue.2
, pp. 143-151
-
-
Hans, M.A.1
Heinzle, E.2
Wittmann, C.3
-
12
-
-
19944382175
-
Comparison of the yeast proteome to other fungal genomes to find core fungal genes
-
DOI 10.1007/s00239-004-0218-1
-
T Hsiang DL Baillie 2005 Comparison of the yeast proteome to other fungal genomes to find core fungal genes J Mol Evol 60 475 483 (Pubitemid 40754788)
-
(2005)
Journal of Molecular Evolution
, vol.60
, Issue.4
, pp. 475-483
-
-
Hsiang, T.1
Baillie, D.L.2
-
13
-
-
0028088517
-
Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes
-
JR Lobry C Gautier 1994 Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes Nucleic Acids Res 22 3174 3180 (Pubitemid 24260653)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.15
, pp. 3174-3180
-
-
Lobry, J.R.1
Gautier, C.2
-
14
-
-
0024975803
-
Adaptive eradication of methionine and cysteine from cyanobacterial light-harvesting proteins
-
D Mazel P Marliere 1989 Adaptive eradication of methionine and cysteine from cyanobacterial light-harvesting proteins Nature 341 245 248
-
(1989)
Nature
, vol.341
, pp. 245-248
-
-
Mazel, D.1
Marliere, P.2
-
15
-
-
24644490119
-
Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes
-
DOI 10.1002/prot.20583
-
J Nilsson B Persson G von Heijne 2005 Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes Proteins 60 606 616 (Pubitemid 41266419)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.60
, Issue.4
, pp. 606-616
-
-
Nilsson, J.1
Persson, B.2
Von Heijne, G.3
-
18
-
-
34548357121
-
Assessing the determinants of evolutionary rates in the presence of noise
-
DOI 10.1093/molbev/msm044
-
JB Plotkin HB Fraser 2007 Assessing the determinants of evolutionary rates in the presence of noise Mol Biol Evol 24 1113 1121 (Pubitemid 47343649)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.5
, pp. 1113-1121
-
-
Plotkin, J.B.1
Fraser, H.B.2
-
19
-
-
0028948605
-
Correlation between codon usage, regional genomic nucleotide composition, and amino acid composition in the cytochrome P-450 gene superfamily
-
TD Porter 1995 Correlation between codon usage, regional genomic nucleotide composition, and amino acid composition in the cytochrome P-450 gene superfamily Biochim Biophys Acta 1261 394 400
-
(1995)
Biochim Biophys Acta
, vol.1261
, pp. 394-400
-
-
Porter, T.D.1
-
20
-
-
0023277621
-
Genetic characterization of a highly efficient alternate pathway of serine biosynthesis in Escherichia coli
-
PD Ravnikar RL Somerville 1987 Genetic characterization of a highly efficient alternate pathway of serine biosynthesis in Escherichia coli J Bacteriol 169 2611 2617 (Pubitemid 17104322)
-
(1987)
Journal of Bacteriology
, vol.169
, Issue.6
, pp. 2611-2617
-
-
Ravnikar, P.D.1
Somerville, R.L.2
-
21
-
-
0141783646
-
The rhythm of yeast
-
DOI 10.1016/S0168-6445(03)00065-2
-
P Richard 2003 The rhythm of yeast FEMS Microbiol Rev 27 547 557 (Pubitemid 37205169)
-
(2003)
FEMS Microbiology Reviews
, vol.27
, Issue.4
, pp. 547-557
-
-
Richard, P.1
-
22
-
-
0029761908
-
Fermentative arginine degradation in Halobacterium salinarium (formerly Halobacterium halobium): Genes, gene products,and transcripts of the arcRACB gene cluster
-
A Ruepp J Soppa 1996 Fermentative arginine degradation in Halobacterium salinarium (formerly Halobacterium halobium): genes, gene products, and transcripts of the arcRACB gene cluster J Bacteriol 178 4942 4947 (Pubitemid 26321296)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.16
, pp. 4942-4947
-
-
Ruepp, A.1
Soppa, J.2
-
23
-
-
0037308511
-
Cost-minimization of amino acid usage
-
DOI 10.1007/s00239-002-2388-z
-
H Seligmann 2003 Cost-minimization of amino acid usage J Mol Evol 56 151 161 (Pubitemid 36169683)
-
(2003)
Journal of Molecular Evolution
, vol.56
, Issue.2
, pp. 151-161
-
-
Seligmann, H.1
-
24
-
-
0033745103
-
Nucleotide bias causes a genomewise bias in the amino acid composition of proteins
-
GA Singer DA Hickey 2000 Nucleotide bias causes a genomewise bias in the amino acid composition of proteins Mol Biol Evol 17 1581 1588
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1581-1588
-
-
Singer, G.A.1
Hickey, D.A.2
-
26
-
-
0032900532
-
Genome phylogeny based on gene content
-
DOI 10.1038/5052
-
B Snel P Bork MA Huynen 1999 Genome phylogeny based on gene content Nat Genet 21 108 110 (Pubitemid 29036294)
-
(1999)
Nature Genetics
, vol.21
, Issue.1
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
27
-
-
34248157233
-
Selection on synthesis cost affects interprotein amino acid usage in all three domains of life
-
DOI 10.1007/s00239-006-0206-8
-
J Swire 2007 Selection on synthesis cost affects interprotein amino acid usage in all three domains of life J Mol Evol 64 558 571 (Pubitemid 46717932)
-
(2007)
Journal of Molecular Evolution
, vol.64
, Issue.5
, pp. 558-571
-
-
Swire, J.1
-
28
-
-
33846536849
-
Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions
-
F Tekaia E Yeramian 2006 Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions BMC Genomics 7 307
-
(2006)
BMC Genomics
, vol.7
, pp. 307
-
-
Tekaia, F.1
Yeramian, E.2
-
29
-
-
0029021581
-
Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package
-
J Thiolouse JR Lobry 1995 Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package Comput Appl Biosci 11 321 329
-
(1995)
Comput Appl Biosci
, vol.11
, pp. 321-329
-
-
Thiolouse, J.1
Lobry, J.R.2
-
30
-
-
27944487902
-
Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes
-
BP Tu A Kudlicki M Rowicka SL McKnight 2005 Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes Science 310 1152
-
(2005)
Science
, vol.310
, pp. 1152
-
-
Tu, B.P.1
Kudlicki, A.2
Rowicka, M.3
McKnight, S.L.4
-
31
-
-
16444380495
-
Dynamics of intracellular metabolites of glycolysis and TCA cycle during cell-cycle-related oscillation in Saccharomyces cerevisiae
-
DOI 10.1002/bit.20408
-
C Wittmann M Hans WA van Winden C Ras JJ Heijnen 2005 Dynamics of intracellular metabolites of glycolysis and TCA cycle during cell-cycle-related oscillation in Saccharomyces cerevisiae Biotechnol Bioeng 89 839 847 (Pubitemid 40476483)
-
(2005)
Biotechnology and Bioengineering
, vol.89
, Issue.7
, pp. 839-847
-
-
Wittmann, C.1
Hans, M.2
Van Winden, W.A.3
Ras, C.4
Heijnen, J.J.5
-
32
-
-
33745317477
-
Genome wide prediction of protein function via a generic knowledge discovery approach based on evidence integration
-
J Xiong S Rayner K Luo Y Li S Chen 2006 Genome wide prediction of protein function via a generic knowledge discovery approach based on evidence integration BMC Bioinformatics 7 268
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 268
-
-
Xiong, J.1
Rayner, S.2
Luo, K.3
Li, Y.4
Chen, S.5
|