메뉴 건너뛰기




Volumn 65, Issue 2, 2007, Pages 186-196

Evolutionarily conserved optimization of amino acid biosynthesis

Author keywords

Amino acid starvation; Amino acid usage bias; Metabolic adaptation; Sequence evolution

Indexed keywords

AMINO ACID; ASPARAGINE; GLYCINE; METHIONINE; TRYPTOPHAN;

EID: 34548533206     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-007-0013-x     Document Type: Article
Times cited : (11)

References (34)
  • 1
    • 0037133671 scopus 로고    scopus 로고
    • Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
    • Akashi H, Gojobori T (2002) Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 99:3695-3700
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 3695-3700
    • Akashi, H.1    Gojobori, T.2
  • 2
    • 27744509060 scopus 로고    scopus 로고
    • Bacillus subtilis cysteine synthetase is a global regulator of the expression of genes involved in sulfur assimilation
    • Albanesi D, Mansilla MC, Schujman GE, de Mendoza D (2005) Bacillus subtilis cysteine synthetase is a global regulator of the expression of genes involved in sulfur assimilation. J Bacteriol 187:7631-7638
    • (2005) J Bacteriol , vol.187 , pp. 7631-7638
    • Albanesi, D.1    Mansilla, M.C.2    Schujman, G.E.3    De Mendoza, D.4
  • 3
    • 18444379063 scopus 로고    scopus 로고
    • Evidence of selection for low cognate amino acid bias in amino acid biosynthetic enzymes
    • Alves R, Savageau MA (2005) Evidence of selection for low cognate amino acid bias in amino acid biosynthetic enzymes. Mol Microbiol 56:1017-1034
    • (2005) Mol Microbiol , vol.56 , pp. 1017-1034
    • Alves, R.1    Savageau, M.A.2
  • 5
    • 0021906426 scopus 로고
    • Alpha-aminoadipate pathway for the biosynthesis of lysine in lower eukaryotes
    • Bhattacharjee JK (1985) Alpha-aminoadipate pathway for the biosynthesis of lysine in lower eukaryotes. Crit Rev Microbiol 12:131-151
    • (1985) Crit Rev Microbiol , vol.12 , pp. 131-151
    • Bhattacharjee, J.K.1
  • 7
    • 0031966808 scopus 로고    scopus 로고
    • Reconstruction of amino acid biosynthesis pathways from the complete genome sequence
    • Bono H, Ogata H, Goto S, Kanehisa M (1998) Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Res 8:203-210
    • (1998) Genome Res , vol.8 , pp. 203-210
    • Bono, H.1    Ogata, H.2    Goto, S.3    Kanehisa, M.4
  • 8
    • 0014410024 scopus 로고
    • Induction and repression of the histidine-degrading enzymes of Bacillus subtilis
    • Chasin LA, Magasanik B (1968) Induction and repression of the histidine-degrading enzymes of Bacillus subtilis. J Biol Chem 243:5165-5178
    • (1968) J Biol Chem , vol.243 , pp. 5165-5178
    • Chasin, L.A.1    Magasanik, B.2
  • 9
    • 33745095012 scopus 로고    scopus 로고
    • Mitochondrial one-carbon metabolism is adapted to the specific needs of yeast, plants and mammals
    • Christensen KE, MacKenzie RE (2006) Mitochondrial one-carbon metabolism is adapted to the specific needs of yeast, plants and mammals. Bioessays 28:595-605
    • (2006) Bioessays , vol.28 , pp. 595-605
    • Christensen, K.E.1    MacKenzie, R.E.2
  • 10
    • 0031582635 scopus 로고    scopus 로고
    • Genetic code synonym quotas and amino acid complexity: Cutting the cost of proteins?
    • Dufton MJ (1997) Genetic code synonym quotas and amino acid complexity: Cutting the cost of proteins? J Theor Biol 187:165-173
    • (1997) J Theor Biol , vol.187 , pp. 165-173
    • Dufton, M.J.1
  • 11
    • 0034887203 scopus 로고    scopus 로고
    • Creating the gene ontology resource: Design and implementation
    • Gene Ontology Consortium
    • Gene Ontology Consortium (2001) Creating the gene ontology resource: design and implementation. Genome Res 11:1425-1433
    • (2001) Genome Res , vol.11 , pp. 1425-1433
  • 12
    • 0031734751 scopus 로고    scopus 로고
    • Comparing genomes in terms of protein structure: Surveys of a finite parts list
    • Gerstein M, Hegyi H (1998) Comparing genomes in terms of protein structure: surveys of a finite parts list. FEMS Microbiol Rev 22:277-304
    • (1998) FEMS Microbiol Rev , vol.22 , pp. 277-304
    • Gerstein, M.1    Hegyi, H.2
  • 13
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Database Issue
    • Harris MA, et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 32[Database Issue]:D258-D261
    • (2004) Nucleic Acids Res , vol.32
    • Harris, M.A.1
  • 15
    • 27144510561 scopus 로고    scopus 로고
    • Translational regulation of GCN4 and the general amino acid control of yeast
    • Hinnebusch AG (2005) Translational regulation of GCN4 and the general amino acid control of yeast. Annu Rev Microbiol 59:407-450
    • (2005) Annu Rev Microbiol , vol.59 , pp. 407-450
    • Hinnebusch, A.G.1
  • 16
    • 33646824923 scopus 로고    scopus 로고
    • PpGpp: Stringent response and survival
    • Jain V, Kumar M, Chatterji D (2006) ppGpp: stringent response and survival. J Microbiol 44:1-10
    • (2006) J Microbiol , vol.44 , pp. 1-10
    • Jain, V.1    Kumar, M.2    Chatterji, D.3
  • 18
    • 0027078560 scopus 로고
    • Correlation analysis of amino acid usage in protein classes
    • Karlin S, Bucher P (1992) Correlation analysis of amino acid usage in protein classes. Proc Natl Acad Sci USA 89:12165-12169
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 12165-12169
    • Karlin, S.1    Bucher, P.2
  • 19
    • 0024022640 scopus 로고
    • Dynamic aspects of vacuolar and cytosolic amino acid pools of Saccharomyces cerevisiae
    • Kitamoto K, Yoshizawa K, Ohsumi Y, Anraku Y (1988) Dynamic aspects of vacuolar and cytosolic amino acid pools of Saccharomyces cerevisiae. J Bacteriol 170:2683-2686
    • (1988) J Bacteriol , vol.170 , pp. 2683-2686
    • Kitamoto, K.1    Yoshizawa, K.2    Ohsumi, Y.3    Anraku, Y.4
  • 20
    • 0014478052 scopus 로고
    • Repression of the histidine operon: Effect of the first enzyme on the kinetics of repression
    • Kovach JS, Berberich MA, Venetianer P, Goldberger RF (1969) Repression of the histidine operon: effect of the first enzyme on the kinetics of repression. J Bacteriol 97:1283-1290
    • (1969) J Bacteriol , vol.97 , pp. 1283-1290
    • Kovach, J.S.1    Berberich, M.A.2    Venetianer, P.3    Goldberger, R.F.4
  • 21
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 22
    • 0024975803 scopus 로고
    • Adaptive eradication of methionine and cysteine from cyanobacterial light-harvesting proteins
    • Mazel D, Marliere P (1989) Adaptive eradication of methionine and cysteine from cyanobacterial light-harvesting proteins. Nature 341:245-248
    • (1989) Nature , vol.341 , pp. 245-248
    • Mazel, D.1    Marliere, P.2
  • 23
    • 0019155456 scopus 로고
    • Regulation of compartmentation of amino acid pools in Saccharomyces cerevisiae and its effects on metabolic control
    • Messenguy F, Colin D, ten Have JP (1980) Regulation of compartmentation of amino acid pools in Saccharomyces cerevisiae and its effects on metabolic control. Eur J Biochem 108:439-447
    • (1980) Eur J Biochem , vol.108 , pp. 439-447
    • Messenguy, F.1    Colin, D.2    Ten Have, J.P.3
  • 24
    • 0017371333 scopus 로고
    • Evidence that specific and "general" control of ornithine carbamoyltransferease production occurs at the level of transcription in Saccharomyces cerevisiae
    • Messenguy F, Cooper TG (1977) Evidence that specific and "general" control of ornithine carbamoyltransferease production occurs at the level of transcription in Saccharomyces cerevisiae. J Bacteriol 130:1253-1261
    • (1977) J Bacteriol , vol.130 , pp. 1253-1261
    • Messenguy, F.1    Cooper, T.G.2
  • 26
    • 4244126317 scopus 로고
    • The relation of serine-glycine metabolism to the formation of single-carbon units
    • Newman EB, Magasanik B (1963) The relation of serine-glycine metabolism to the formation of single-carbon units. Biochim Biophys Acta 78:437-448
    • (1963) Biochim Biophys Acta , vol.78 , pp. 437-448
    • Newman, E.B.1    Magasanik, B.2
  • 27
    • 33747505835 scopus 로고    scopus 로고
    • Persistent biases in the amino acid composition of prokaryotic proteins
    • Pascal G, Medique C, Danchin A (2006) Persistent biases in the amino acid composition of prokaryotic proteins. Bioessays 28:726-738
    • (2006) Bioessays , vol.28 , pp. 726-738
    • Pascal, G.1    Medique, C.2    Danchin, A.3
  • 28
    • 0034613194 scopus 로고    scopus 로고
    • Regulation of the balance of one-carbon metabolism in Saccharomyces cerevisiae
    • Piper MD, Hong SP, Ball GE, Dawes IW (2000) Regulation of the balance of one-carbon metabolism in Saccharomyces cerevisiae. J Biol Chem 275:30987-30995
    • (2000) J Biol Chem , vol.275 , pp. 30987-30995
    • Piper, M.D.1    Hong, S.P.2    Ball, G.E.3    Dawes, I.W.4
  • 29
    • 0037308511 scopus 로고    scopus 로고
    • Cost-minimization of amino acid usage
    • Seligmann H (2003) Cost-minimization of amino acid usage. J Mol Evol 56:151-161
    • (2003) J Mol Evol , vol.56 , pp. 151-161
    • Seligmann, H.1
  • 30
    • 0015910716 scopus 로고
    • A theoretical study on the amount of ATP required for synthesis of microbial cell material
    • Stouthamer AH (1973) A theoretical study on the amount of ATP required for synthesis of microbial cell material. Antonie Van Leeuwenhoek 39:545-565
    • (1973) Antonie Van Leeuwenhoek , vol.39 , pp. 545-565
    • Stouthamer, A.H.1
  • 31
    • 0017133902 scopus 로고
    • Regulation of branched-chain amino acid biosynthesis
    • Szentirmai A, Horvath I (1976) Regulation of branched-chain amino acid biosynthesis. Acta Microbiol Acad Sci Hung 23:137-149
    • (1976) Acta Microbiol Acad Sci Hung , vol.23 , pp. 137-149
    • Szentirmai, A.1    Horvath, I.2
  • 32
    • 0031457095 scopus 로고    scopus 로고
    • Metabolism of sulfur amino acids in Saccharomyces cerevisiae
    • Thomas D, Surdin-Kerjan Y (1997) Metabolism of sulfur amino acids in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 61:503-532
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 503-532
    • Thomas, D.1    Surdin-Kerjan, Y.2
  • 33
    • 0017794395 scopus 로고
    • Amino acid biosynthesis and its regulation
    • Umbarger HE (1978) Amino acid biosynthesis and its regulation. Annu Rev Biochem 47:532-606
    • (1978) Annu Rev Biochem , vol.47 , pp. 532-606
    • Umbarger, H.E.1
  • 34
    • 0027855510 scopus 로고
    • Cloning of the dihydroxyacid dehydratase-encoding gene (ILV3) from Saccharomyces cerevisiae
    • Velasco JA, Cansado J, Pena MC, Kawakami T, Laborda J, Notario V (1993) Cloning of the dihydroxyacid dehydratase-encoding gene (ILV3) from Saccharomyces cerevisiae. Gene 137:179-185
    • (1993) Gene , vol.137 , pp. 179-185
    • Velasco, J.A.1    Cansado, J.2    Pena, M.C.3    Kawakami, T.4    Laborda, J.5    Notario, V.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.