메뉴 건너뛰기




Volumn 23, Issue 3-4, 2009, Pages 178-187

DNA microarray-based detection and identification of Burkholderia mallei, Burkholderia pseudomallei and Burkholderia spp.

Author keywords

Biotin labeling; Burkholderia mallei; Burkholderia pseudomallei; Hybridization; Multiplex PCR; Oligonucleotide microarray

Indexed keywords

RNA 16S;

EID: 67349197574     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2009.04.001     Document Type: Article
Times cited : (31)

References (41)
  • 2
    • 0027096070 scopus 로고
    • Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov
    • Yabuuchi E., Kosako Y., Oyaizu H., Yano I., Hotta H., Hashimoto Y., et al. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 36 12 (1992) 1251-1275
    • (1992) Microbiol Immunol , vol.36 , Issue.12 , pp. 1251-1275
    • Yabuuchi, E.1    Kosako, Y.2    Oyaizu, H.3    Yano, I.4    Hotta, H.5    Hashimoto, Y.6
  • 5
    • 17444369030 scopus 로고    scopus 로고
    • Melioidosis: epidemiology, pathophysiology, and management
    • Review. Erratum in: Clin Microbiol Rev. 2007;20(3):533
    • Cheng A.C., and Currie B.J. Melioidosis: epidemiology, pathophysiology, and management. Clin Microbiol Rev 18 2 (2005 Apr) 383-416 Review. Erratum in: Clin Microbiol Rev. 2007;20(3):533
    • (2005) Clin Microbiol Rev , vol.18 , Issue.2 , pp. 383-416
    • Cheng, A.C.1    Currie, B.J.2
  • 6
    • 0026088981 scopus 로고
    • Melioidosis: the tip of the iceberg?
    • Dance D.A. Melioidosis: the tip of the iceberg?. Clin Microbiol Rev 4 1 (1991) 52-60
    • (1991) Clin Microbiol Rev , vol.4 , Issue.1 , pp. 52-60
    • Dance, D.A.1
  • 7
    • 0030023035 scopus 로고    scopus 로고
    • Intracellular survival of Burkholderia pseudomallei
    • Jones A.L., Beveridge T.J., and Woods D.E. Intracellular survival of Burkholderia pseudomallei. Infect Immun 64 3 (1996) 782-790
    • (1996) Infect Immun , vol.64 , Issue.3 , pp. 782-790
    • Jones, A.L.1    Beveridge, T.J.2    Woods, D.E.3
  • 10
    • 0034916347 scopus 로고    scopus 로고
    • Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates
    • Coenye T., Mahenthiralingam E., Henry D., LiPuma J.J., Laevens S., Gillis M., et al. Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates. Int J Syst Evol Microbiol 51 Pt 4 (2001 Jul) 1481-1490
    • (2001) Int J Syst Evol Microbiol , vol.51 , Issue.PART 4 , pp. 1481-1490
    • Coenye, T.1    Mahenthiralingam, E.2    Henry, D.3    LiPuma, J.J.4    Laevens, S.5    Gillis, M.6
  • 11
    • 0142043977 scopus 로고    scopus 로고
    • Pathophysiology and management of pulmonary infections in cystic fibrosis
    • Review
    • Gibson R.L., Burns J.L., and Ramsey B.W. Pathophysiology and management of pulmonary infections in cystic fibrosis. Am J Respir Crit Care Med 168 8 (2003 Oct 15) 918-951 Review
    • (2003) Am J Respir Crit Care Med , vol.168 , Issue.8 , pp. 918-951
    • Gibson, R.L.1    Burns, J.L.2    Ramsey, B.W.3
  • 12
    • 33747161279 scopus 로고    scopus 로고
    • Burkholderia respiratory tract infections in Italian patients with cystic fibrosis: molecular characterization
    • Allice T., Scutera S., Chirillo M.G., and Savoia D. Burkholderia respiratory tract infections in Italian patients with cystic fibrosis: molecular characterization. J Infect 53 3 (2006 Sep) 159-165
    • (2006) J Infect , vol.53 , Issue.3 , pp. 159-165
    • Allice, T.1    Scutera, S.2    Chirillo, M.G.3    Savoia, D.4
  • 13
    • 34248391332 scopus 로고    scopus 로고
    • Burkholderia cenocepacia, B. multivorans, B. ambifaria and B. vietnamiensis isolates from cystic fibrosis patients have different profiles of exoenzyme production
    • Carvalho A.P., Ventura G.M., Pereira C.B., Leão R.S., Folescu T.W., Higa L., et al. Burkholderia cenocepacia, B. multivorans, B. ambifaria and B. vietnamiensis isolates from cystic fibrosis patients have different profiles of exoenzyme production. APMIS 115 4 (2007 Apr) 311-318
    • (2007) APMIS , vol.115 , Issue.4 , pp. 311-318
    • Carvalho, A.P.1    Ventura, G.M.2    Pereira, C.B.3    Leão, R.S.4    Folescu, T.W.5    Higa, L.6
  • 14
    • 0031855342 scopus 로고    scopus 로고
    • Molecular procedure for rapid detection of Burkholderia mallei and Burkholderia pseudomallei
    • Bauernfeind A., Roller C., Meyer D., Jungwirth R., and Schneider I. Molecular procedure for rapid detection of Burkholderia mallei and Burkholderia pseudomallei. J Clin Microbiol 36 9 (1998 Sep) 2737-2741
    • (1998) J Clin Microbiol , vol.36 , Issue.9 , pp. 2737-2741
    • Bauernfeind, A.1    Roller, C.2    Meyer, D.3    Jungwirth, R.4    Schneider, I.5
  • 15
    • 0037112116 scopus 로고    scopus 로고
    • A possible pitfall in the identification of Burkholderia mallei using molecular identification systems based on the sequence of the flagellin fliC gene
    • Sprague L.D., Zysk G., Hagen R.M., Meyer H., Ellis J., Anuntagool N., et al. A possible pitfall in the identification of Burkholderia mallei using molecular identification systems based on the sequence of the flagellin fliC gene. FEMS Immunol Med Microbiol 34 3 (2002) 231-236
    • (2002) FEMS Immunol Med Microbiol , vol.34 , Issue.3 , pp. 231-236
    • Sprague, L.D.1    Zysk, G.2    Hagen, R.M.3    Meyer, H.4    Ellis, J.5    Anuntagool, N.6
  • 16
    • 0142092739 scopus 로고    scopus 로고
    • Identification of the causative agents of glanders and melioidosis by polymerase chain reaction
    • Tkachenko G.A., Antonov V.A., Zamaraev V.S., and Iliukhin V.I. Identification of the causative agents of glanders and melioidosis by polymerase chain reaction. Mol Gen Mikrobiol Virusol 3 (2003) 18-22
    • (2003) Mol Gen Mikrobiol Virusol , vol.3 , pp. 18-22
    • Tkachenko, G.A.1    Antonov, V.A.2    Zamaraev, V.S.3    Iliukhin, V.I.4
  • 17
    • 0036140843 scopus 로고    scopus 로고
    • Identification of a novel repetitive DNA element and its use as a molecular marker for strain typing and discrimination of ara- from ara+ Burkholderia pseudomallei isolates
    • Liu Y., Wang D., Yap E.H., Yap E., and Lee M.A. Identification of a novel repetitive DNA element and its use as a molecular marker for strain typing and discrimination of ara- from ara+ Burkholderia pseudomallei isolates. J Med Microbiol 51 1 (2002 Jan) 76-82
    • (2002) J Med Microbiol , vol.51 , Issue.1 , pp. 76-82
    • Liu, Y.1    Wang, D.2    Yap, E.H.3    Yap, E.4    Lee, M.A.5
  • 18
    • 0036599655 scopus 로고    scopus 로고
    • A simple method to detect and differentiate Burkholderia pseudomallei and Burkholderia thailandensis using specific flagellin gene primers
    • Sonthayanon P., Krasao P., Wuthiekanun V., Panyim S., and Tungpradabkul S. A simple method to detect and differentiate Burkholderia pseudomallei and Burkholderia thailandensis using specific flagellin gene primers. Mol Cell Probes 16 3 (2002 Jun) 217-222
    • (2002) Mol Cell Probes , vol.16 , Issue.3 , pp. 217-222
    • Sonthayanon, P.1    Krasao, P.2    Wuthiekanun, V.3    Panyim, S.4    Tungpradabkul, S.5
  • 19
    • 13644267695 scopus 로고    scopus 로고
    • Detection and differentiation of Burkholderia pseudomallei, Burkholderia mallei and Burkholderia thailandensis by multiplex PCR
    • Lee M.A., Wang D., and Yap E.H. Detection and differentiation of Burkholderia pseudomallei, Burkholderia mallei and Burkholderia thailandensis by multiplex PCR. FEMS Immunol Med Microbiol 43 3 (2005 Mar 1) 413-417
    • (2005) FEMS Immunol Med Microbiol , vol.43 , Issue.3 , pp. 413-417
    • Lee, M.A.1    Wang, D.2    Yap, E.H.3
  • 20
    • 33646227418 scopus 로고    scopus 로고
    • Using real-time PCR to specifically detect Burkholderia mallei
    • Ulrich M.P., Norwood D.A., Christensen D.R., and Ulrich R.L. Using real-time PCR to specifically detect Burkholderia mallei. J Med Microbiol 55 Pt 5 (2006) 551-559
    • (2006) J Med Microbiol , vol.55 , Issue.PART 5 , pp. 551-559
    • Ulrich, M.P.1    Norwood, D.A.2    Christensen, D.R.3    Ulrich, R.L.4
  • 21
    • 33645870682 scopus 로고    scopus 로고
    • Detection of the reemerging agent Burkholderia mallei in a recent outbreak of glanders in the United Arab Emirates by a newly developed fliP-based polymerase chain reaction assay
    • Epub 2006 Feb 8
    • Scholz H.C., Joseph M., Tomaso H., Al Dahouk S., Witte A., Kinne J., et al. Detection of the reemerging agent Burkholderia mallei in a recent outbreak of glanders in the United Arab Emirates by a newly developed fliP-based polymerase chain reaction assay. Diagn Microbiol Infect Dis 54 4 (2006 Apr) 241-247 Epub 2006 Feb 8
    • (2006) Diagn Microbiol Infect Dis , vol.54 , Issue.4 , pp. 241-247
    • Scholz, H.C.1    Joseph, M.2    Tomaso, H.3    Al Dahouk, S.4    Witte, A.5    Kinne, J.6
  • 22
    • 31844442366 scopus 로고    scopus 로고
    • Development of a 5′-nuclease real-time PCR assay targeting fliP for the rapid identification of Burkholderia mallei in clinical samples
    • Tomaso H., Scholz H.C., Al Dahouk S., Eickhoff M., Treu T.M., Wernery R., et al. Development of a 5′-nuclease real-time PCR assay targeting fliP for the rapid identification of Burkholderia mallei in clinical samples. Clin Chem 52 2 (2006 Feb) 307-310
    • (2006) Clin Chem , vol.52 , Issue.2 , pp. 307-310
    • Tomaso, H.1    Scholz, H.C.2    Al Dahouk, S.3    Eickhoff, M.4    Treu, T.M.5    Wernery, R.6
  • 23
    • 33847254410 scopus 로고    scopus 로고
    • Development and clinical evaluation of a PCR assay targeting the metalloprotease gene (mprA) of B. pseudomallei
    • Neubauer H., Sprague L.D., Joseph M., Tomaso H., Al Dahouk S., Witte A., et al. Development and clinical evaluation of a PCR assay targeting the metalloprotease gene (mprA) of B. pseudomallei. Zoonoses Public Health 54 1 (2007) 44-50
    • (2007) Zoonoses Public Health , vol.54 , Issue.1 , pp. 44-50
    • Neubauer, H.1    Sprague, L.D.2    Joseph, M.3    Tomaso, H.4    Al Dahouk, S.5    Witte, A.6
  • 24
    • 30744454619 scopus 로고    scopus 로고
    • Development and evaluation of a real-time PCR assay targeting the type III secretion system of Burkholderia pseudomallei
    • Novak R.T., Glass M.B., Gee J.E., Gal D., Mayo M.J., Currie B.J., et al. Development and evaluation of a real-time PCR assay targeting the type III secretion system of Burkholderia pseudomallei. J Clin Microbiol 44 1 (2006) 85-90
    • (2006) J Clin Microbiol , vol.44 , Issue.1 , pp. 85-90
    • Novak, R.T.1    Glass, M.B.2    Gee, J.E.3    Gal, D.4    Mayo, M.J.5    Currie, B.J.6
  • 25
    • 14944340948 scopus 로고    scopus 로고
    • Use of diagnostic microarrays for determination of virulence gene patterns of Escherichia coli K1, a major cause of neonatal meningitis
    • Korczak B., Frey J., Schrenzel J., Pluschke G., Pfister R., Ehricht R., et al. Use of diagnostic microarrays for determination of virulence gene patterns of Escherichia coli K1, a major cause of neonatal meningitis. J Clin Microbiol 43 3 (2005 Mar) 1024-1031
    • (2005) J Clin Microbiol , vol.43 , Issue.3 , pp. 1024-1031
    • Korczak, B.1    Frey, J.2    Schrenzel, J.3    Pluschke, G.4    Pfister, R.5    Ehricht, R.6
  • 26
    • 33748606348 scopus 로고    scopus 로고
    • The use of DNA microarray technology for detection and genetic characterisation of chlamydiae
    • [discussion 326-7]
    • Sachse K., Hotzel H., Slickers P., and Ehricht R. The use of DNA microarray technology for detection and genetic characterisation of chlamydiae. Dev Biol (Basel) 126 (2006) 203-210 [discussion 326-7]
    • (2006) Dev Biol (Basel) , vol.126 , pp. 203-210
    • Sachse, K.1    Hotzel, H.2    Slickers, P.3    Ehricht, R.4
  • 27
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41 (1999) 95-98
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 28
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Print 2005
    • Katoh K., Kuma K., Toh H., and Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33 2 (2005 Jan 20) 511-518 Print 2005
    • (2005) Nucleic Acids Res , vol.33 , Issue.2 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 29
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25 24 (1997 Dec 15) 4876-4882
    • (1997) Nucleic Acids Res , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 30
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia Jr. J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A 95 4 (1998 Feb 17) 1460-1465
    • (1998) Proc Natl Acad Sci U S A , vol.95 , Issue.4 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 31
    • 25144505220 scopus 로고    scopus 로고
    • Rapid genotyping of methicillin-resistant Staphylococcus aureus (MRSA) isolates using miniaturised oligonucleotide arrays
    • Monecke S., and Ehricht R. Rapid genotyping of methicillin-resistant Staphylococcus aureus (MRSA) isolates using miniaturised oligonucleotide arrays. Clin Microbiol Infect 11 10 (2005 Oct) 825-833
    • (2005) Clin Microbiol Infect , vol.11 , Issue.10 , pp. 825-833
    • Monecke, S.1    Ehricht, R.2
  • 32
    • 0141923837 scopus 로고    scopus 로고
    • Use of 16S rRNA gene sequencing for rapid identification and differentiation of Burkholderia pseudomallei and B. mallei
    • Gee J.E., Sacchi C.T., Glass M.B., De B.K., Weyant R.S., Levett P.N., et al. Use of 16S rRNA gene sequencing for rapid identification and differentiation of Burkholderia pseudomallei and B. mallei. J Clin Microbiol 41 10 (2003) 4647-4654
    • (2003) J Clin Microbiol , vol.41 , Issue.10 , pp. 4647-4654
    • Gee, J.E.1    Sacchi, C.T.2    Glass, M.B.3    De, B.K.4    Weyant, R.S.5    Levett, P.N.6
  • 34
    • 1642465560 scopus 로고    scopus 로고
    • PCR-RFLP based differentiation of Burkholderia mallei and Burkholderia pseudomallei
    • Tanpiboonsak S., Paemanee A., Bunyarataphan S., and Tungpradabkul S. PCR-RFLP based differentiation of Burkholderia mallei and Burkholderia pseudomallei. Mol Cell Probes 18 2 (2004 Apr) 97-101
    • (2004) Mol Cell Probes , vol.18 , Issue.2 , pp. 97-101
    • Tanpiboonsak, S.1    Paemanee, A.2    Bunyarataphan, S.3    Tungpradabkul, S.4
  • 37
    • 3242794169 scopus 로고    scopus 로고
    • Application of oligonucleotide array technology for the rapid detection of pathogenic bacteria of foodborne infections
    • Hong B.X., Jiang L.F., Hu Y.S., Fang D.Y., and Guo H.Y. Application of oligonucleotide array technology for the rapid detection of pathogenic bacteria of foodborne infections. J Microbiol Methods 58 3 (2004 Sep) 403-411
    • (2004) J Microbiol Methods , vol.58 , Issue.3 , pp. 403-411
    • Hong, B.X.1    Jiang, L.F.2    Hu, Y.S.3    Fang, D.Y.4    Guo, H.Y.5
  • 38
    • 11844271964 scopus 로고    scopus 로고
    • DNA microarray-based detection and identification of Chlamydia and Chlamydophila spp
    • Sachse K., Hotzel H., Slickers P., Ellinger T., and Ehricht R. DNA microarray-based detection and identification of Chlamydia and Chlamydophila spp. Mol Cell Probes 19 1 (2005 Feb) 41-50
    • (2005) Mol Cell Probes , vol.19 , Issue.1 , pp. 41-50
    • Sachse, K.1    Hotzel, H.2    Slickers, P.3    Ellinger, T.4    Ehricht, R.5
  • 39
    • 0038628890 scopus 로고    scopus 로고
    • Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei
    • Godoy D., Randle G., Simpson A.J., Aanensen D.M., Pitt T.L., Kinoshita R., et al. Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41 5 (2003 May) 2068-2079
    • (2003) J Clin Microbiol , vol.41 , Issue.5 , pp. 2068-2079
    • Godoy, D.1    Randle, G.2    Simpson, A.J.3    Aanensen, D.M.4    Pitt, T.L.5    Kinoshita, R.6
  • 40
    • 34247389590 scopus 로고    scopus 로고
    • Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping
    • U'Ren J.M., Schupp J.M., Pearson T., Hornstra H., Friedman C.L., Smith K.L., et al. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. BMC Microbiol 7 (2007 Mar 30) 23
    • (2007) BMC Microbiol , vol.7 , pp. 23
    • U'Ren, J.M.1    Schupp, J.M.2    Pearson, T.3    Hornstra, H.4    Friedman, C.L.5    Smith, K.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.