메뉴 건너뛰기




Volumn 1, Issue , 2008, Pages

Advanced spot quality analysis in two-colour microarray experiments

Author keywords

[No Author keywords available]

Indexed keywords


EID: 67349173678     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-1-80     Document Type: Article
Times cited : (8)

References (29)
  • 1
    • 33644844520 scopus 로고    scopus 로고
    • Microarray technology: Beyond transcript profiling and genotype analysis
    • 10.1038/nrg1809. 16485019
    • Microarray technology: beyond transcript profiling and genotype analysis. JD Hoheisel, Nat Rev Genet 2006 7 3 200 210 10.1038/nrg1809 16485019
    • (2006) Nat Rev Genet , vol.7 , Issue.3 , pp. 200-210
    • Hoheisel, J.D.1
  • 2
    • 36148942839 scopus 로고    scopus 로고
    • Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton
    • DOI 10.1186/1471-2164-8-294
    • Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton. J Muller A Mehlen G Vetter M Yatskou A Muller F Chalmel O Poch E Friederich L Vallar, BMC genomics 2007 8 294 17727702 10.1186/1471-2164-8-294 (Pubitemid 350104399)
    • (2007) BMC Genomics , vol.8 , pp. 294
    • Muller, J.1    Mehlen, A.2    Vetter, G.3    Yatskou, M.4    Muller, A.5    Chalmel, F.6    Poch, O.7    Friederich, E.8    Vallar, L.9
  • 3
    • 33747109441 scopus 로고    scopus 로고
    • AMDA: An R package for the automated microarray data analysis
    • DOI 10.1186/1471-2105-7-335
    • AMDA: an R package for the automated microarray data analysis. M Pelizzola N Pavelka M Foti P Ricciardi-Castagnoli, BMC Bioinformatics 2006 7 335 16824223 10.1186/1471-2105-7-335 (Pubitemid 44219370)
    • (2006) BMC Bioinformatics , vol.7 , pp. 335
    • Pelizzola, M.1    Pavelka, N.2    Foti, M.3    Ricciardi-Castagnoli, P.4
  • 6
    • 29244488581 scopus 로고    scopus 로고
    • An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments
    • DOI 10.1186/1471-2105-6-293
    • An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments. E Novikov E Barillot, BMC Bioinformatics 2005 6 293 16336688 10.1186/1471-2105-6-293 (Pubitemid 41829855)
    • (2005) BMC Bioinformatics , vol.6 , pp. 293
    • Novikov, E.1    Barillot, E.2
  • 7
    • 0036421465 scopus 로고    scopus 로고
    • Quality indicators increase the reliability of microarray data
    • 10.1006/geno.2002.6848. 12376092
    • Quality indicators increase the reliability of microarray data. W Raffelsberger D Dembele MG Neubauer MM Gottardis H Gronemeyer, Genomics 2002 80 4 385 394 10.1006/geno.2002.6848 12376092
    • (2002) Genomics , vol.80 , Issue.4 , pp. 385-394
    • Raffelsberger, W.1    Dembele, D.2    Neubauer, M.G.3    Gottardis, M.M.4    Gronemeyer, H.5
  • 8
    • 18744422885 scopus 로고    scopus 로고
    • Microarray optimizations: Increasing spot accuracy and automated identification of true microarray signals
    • 12060692. 10.1093/nar/gnf053
    • Microarray optimizations: increasing spot accuracy and automated identification of true microarray signals. PH Tran DA Peiffer Y Shin LM Meek JP Brody KW Cho, Nucleic Acids Res 2002 30 12 54 12060692 10.1093/nar/gnf053
    • (2002) Nucleic Acids Res , vol.30 , Issue.12 , pp. 554
    • Tran, P.H.1    Peiffer, D.A.2    Shin, Y.3    Meek, L.M.4    Brody, J.P.5    Cho, K.W.6
  • 9
    • 34247844352 scopus 로고    scopus 로고
    • Systematic approaches for incorporating control spots and data quality information to improve normalization of cDNA microarray data
    • 10.1080/10543400701199544. 17479391
    • Systematic approaches for incorporating control spots and data quality information to improve normalization of cDNA microarray data. D Wang CH Zhang MB Soares J Huang, J Biopharm Stat 2007 17 3 415 431 10.1080/10543400701199544 17479391
    • (2007) J Biopharm Stat , vol.17 , Issue.3 , pp. 415-431
    • Wang, D.1    Zhang, C.H.2    Soares, M.B.3    Huang, J.4
  • 10
    • 33746974277 scopus 로고    scopus 로고
    • Improving missing value imputation of microarray data by using spot quality weights
    • DOI 10.1186/1471-2105-7-306
    • Improving missing value imputation of microarray data by using spot quality weights. P Johansson J Hakkinen, BMC Bioinformatics 2006 7 306 16780582 10.1186/1471-2105-7-306 (Pubitemid 44202787)
    • (2006) BMC Bioinformatics , vol.7 , pp. 306
    • Johansson, P.1    Hakkinen, J.2
  • 11
    • 17444377946 scopus 로고    scopus 로고
    • Quick and simple: Quality control of microarray data
    • 10.1093/bioinformatics/bti238. 15615693
    • Quick and simple: quality control of microarray data. U Sauer C Preininger R Hany-Schmatzberger, Bioinformatics 2005 21 8 1572 1578 10.1093/bioinformatics/bti238 15615693
    • (2005) Bioinformatics , vol.21 , Issue.8 , pp. 1572-1578
    • Sauer, U.1    Preininger, C.2    Hany-Schmatzberger, R.3
  • 12
    • 24144472551 scopus 로고    scopus 로고
    • Automated Microarray Image Analysis Toolbox for MATLAB
    • 10.1093/bioinformatics/bti576. 16046497
    • Automated Microarray Image Analysis Toolbox for MATLAB. AM White DS Daly AR Willse M Protic DP Chandler, Bioinformatics 2005 21 17 3578 3579 10.1093/bioinformatics/bti576 16046497
    • (2005) Bioinformatics , vol.21 , Issue.17 , pp. 3578-3579
    • White, A.M.1    Daly, D.S.2    Willse, A.R.3    Protic, M.4    Chandler, D.P.5
  • 13
    • 0035433128 scopus 로고    scopus 로고
    • Quantitative quality control in microarray image processing and data acquisition
    • 11470890. 10.1093/nar/29.15.e75
    • Quantitative quality control in microarray image processing and data acquisition. X Wang S Ghosh SW Guo, Nucleic Acids Res 2001 29 15 75 75 11470890 10.1093/nar/29.15.e75
    • (2001) Nucleic Acids Res , vol.29 , Issue.15 , pp. 575-575
    • Wang, X.1    Ghosh, S.2    Guo, S.W.3
  • 14
    • 33749845558 scopus 로고    scopus 로고
    • MASQOT-GUI: Spot quality assessment for the two-channel microarray platform
    • 10.1093/bioinformatics/btl434. 16899490
    • MASQOT-GUI: spot quality assessment for the two-channel microarray platform. M Bylesjo A Sjodin D Eriksson H Antti T Moritz S Jansson J Trygg, Bioinformatics 2006 22 20 2554 2555 10.1093/bioinformatics/btl434 16899490
    • (2006) Bioinformatics , vol.22 , Issue.20 , pp. 2554-2555
    • Bylesjo, M.1    Sjodin, A.2    Eriksson, D.3    Antti, H.4    Moritz, T.5    Jansson, S.6    Trygg, J.7
  • 16
    • 34047141752 scopus 로고    scopus 로고
    • Software package for automatic microarray image analysis (MAIA)
    • 10.1093/bioinformatics/btl644. 17237062
    • Software package for automatic microarray image analysis (MAIA). E Novikov E Barillot, Bioinformatics 2007 23 5 639 640 10.1093/bioinformatics/ btl644 17237062
    • (2007) Bioinformatics , vol.23 , Issue.5 , pp. 639-640
    • Novikov, E.1    Barillot, E.2
  • 17
    • 77955778823 scopus 로고    scopus 로고
    • Guide to microarray analysis
    • Axon Instruments Inc
    • Guide to microarray analysis. D Verdnik, Application Note Axon Instruments Inc 2004
    • (2004) Application Note
    • Verdnik, D.1
  • 19
    • 39049179527 scopus 로고    scopus 로고
    • Simulation study of ratio calculation formulae of two-colour cDNA microarray data
    • 10.2165/00822942-200605040-00008. 17140272
    • Simulation study of ratio calculation formulae of two-colour cDNA microarray data. H Jia L Lu SC Hng J Li, Appl Bioinformatics 2006 5 4 255 266 10.2165/00822942-200605040-00008 17140272
    • (2006) Appl Bioinformatics , vol.5 , Issue.4 , pp. 255-266
    • Jia, H.1    Lu, L.2    Hng, S.C.3    Li, J.4
  • 20
    • 31044431975 scopus 로고    scopus 로고
    • A robust algorithm for ratio estimation in two-color microarray experiments
    • 10.1142/S0219720005001624. 16374914
    • A robust algorithm for ratio estimation in two-color microarray experiments. E Novikov E Barillot, J Bioinform Comput Biol 2005 3 6 1411 1428 10.1142/S0219720005001624 16374914
    • (2005) J Bioinform Comput Biol , vol.3 , Issue.6 , pp. 1411-1428
    • Novikov, E.1    Barillot, E.2
  • 21
  • 22
    • 34249289041 scopus 로고    scopus 로고
    • Snail, Zeb and bHLH factors in tumour progression: An alliance against the epithelial phenotype?
    • 10.1038/nrc2131. 17508028
    • Snail, Zeb and bHLH factors in tumour progression: an alliance against the epithelial phenotype? H Peinado D Olmeda A Cano, Nat Rev Cancer 2007 7 6 415 428 10.1038/nrc2131 17508028
    • (2007) Nat Rev Cancer , vol.7 , Issue.6 , pp. 415-428
    • Peinado, H.1    Olmeda, D.2    Cano, A.3
  • 24
    • 77955836904 scopus 로고    scopus 로고
    • Significance analysis of microarrays (sam) software
    • Significance analysis of microarrays (sam) software. G Chu B Narasimhan R Tibshirani V Tusher, The Internet 2003 http://www-stat.stanford.edu/∼tibs/ SAM/
    • (2003) The Internet
    • Chu, G.1    Narasimhan, B.2    Tibshirani, R.3    Tusher, V.4
  • 26
    • 2442705493 scopus 로고    scopus 로고
    • Snail blocks the cell cycle and confers resistance to cell death
    • DOI 10.1101/gad.294104
    • Snail blocks the cell cycle and confers resistance to cell death. S Vega AV Morales OH Ocana F Valdes I Fabregat MA Nieto, Genes Dev 2004 18 10 1131 1143 15155580 10.1101/gad.294104 (Pubitemid 38669034)
    • (2004) Genes and Development , vol.18 , Issue.10 , pp. 1131-1143
    • Vega, S.1    Morales, A.V.2    Ocana, O.H.3    Valdes, F.4    Fabregat, I.5    Nieto, M.A.6
  • 27
    • 15744374449 scopus 로고    scopus 로고
    • Wnt-dependent regulation of the E-cadherin repressor snail
    • 10.1074/jbc.M413878200. 15647282
    • Wnt-dependent regulation of the E-cadherin repressor snail. JI Yook XY Li I Ota ER Fearon SJ Weiss, J Biol Chem 2005 280 12 11740 11748 10.1074/jbc.M413878200 15647282
    • (2005) J Biol Chem , vol.280 , Issue.12 , pp. 11740-11748
    • Yook, J.I.1    Li, X.Y.2    Ota, I.3    Fearon, E.R.4    Weiss, S.J.5
  • 29
    • 22244432840 scopus 로고    scopus 로고
    • The transcription factor snail induces tumor cell invasion through modulation of the epithelial cell differentiation program
    • 10.1158/0008-5472.CAN-04-3545. 16024625
    • The transcription factor snail induces tumor cell invasion through modulation of the epithelial cell differentiation program. B De Craene B Gilbert C Stove E Bruyneel F van Roy G Berx, Cancer Res 2005 65 14 6237 6244 10.1158/0008-5472.CAN-04-3545 16024625
    • (2005) Cancer Res , vol.65 , Issue.14 , pp. 6237-6244
    • De Craene, B.1    Gilbert, B.2    Stove, C.3    Bruyneel, E.4    Van Roy, F.5    Berx, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.