Saturation and comparative mapping of the genomic region harboring hessian fly resistance gene H26 in wheat

Theoretical and Applied Genetics

Volumn 118, Issue 8, 2009, Pages 1589-1599

  Yu, Guo Tai ^a   Cai, Xiwen ^a   Harris, Marion O ^a   Gu, Yong Qiang ^b   Luo, Ming Cheng ^c   Xu, Steven S ^d  

^a NORTH DAKOTA STATE UNIVERSITY   (United States)

^b WESTERN REGIONAL RESEARCH CENTER   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AEGILOPS; CHROMOSOMAL DELETIONS; CHROMOSOMAL REGIONS; COLLINEARITY; COMPARATIVE ANALYSIS; COMPARATIVE MAPPINGS; DISTAL REGIONS; GENOMIC REGIONS; GENOMIC SEQUENCES; HESSIAN FLIES; HESSIAN FLY [MAYETIOLA DESTRUCTOR]; MARKER-ASSISTED SELECTIONS; MOLECULAR MARKERS; ORYZA SATIVA; PCR-BASED MARKERS; RESISTANCE GENES; SATURATION MAPPINGS; SEQUENCE-TAGGED SITES; STS MARKERS; WHEAT (TRITICUM AESTIVUM L.); WHEAT BREEDINGS;

BINS; CLONING; GENES; OPTICAL TOMOGRAPHY; PLANTS (BOTANY);

GRAIN (AGRICULTURAL PRODUCT);

ANIMAL; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; CROSS BREEDING; EXPRESSED SEQUENCE TAG; FLY; GENETIC MARKER; GENETICS; PLANT CHROMOSOME; PLANT GENE; PLOIDY; POACEAE; RECESSIVE GENE; RICE; SEQUENCE TAGGED SITE; SPECIES DIFFERENCE; WHEAT;

ANIMALS; CHROMOSOMES, PLANT; CROSSES, GENETIC; DIPTERA; EXPRESSED SEQUENCE TAGS; GENES, PLANT; GENES, RECESSIVE; GENETIC MARKERS; ORYZA SATIVA; PHYSICAL CHROMOSOME MAPPING; PLOIDIES; POACEAE; SEQUENCE TAGGED SITES; SPECIES SPECIFICITY; TRITICUM;

AEGILOPS TAUSCHII; BRACHYPODIUM; BRACHYPODIUM DISTACHYON; MAYETIOLA DESTRUCTOR; ORYZA SATIVA; TRITICUM AESTIVUM;

EID: 67349164759     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-1006-5     Document Type: Article

References (53)

1. S Ahn JA Anderson ME Sorrells SD Tanksley 1993 Homoeologous relationships of rice, wheat and maize chromosomes Mol Gen Genet 241 483 490
2. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 A new generation of protein database search programs Nucleic Acids Res 25 3389 3402
3. WA Berzonsky H Ding SD Haley MO Harris RJ Lamb RIH Mckenzie HW Ohm FL Patterson F Peairs DR Porter RH Ratcliffe TG Shanower 2003 Breeding wheat for resistance to insects Plant Breed Rev 22 221 296
4. E Bossolini T Wicker PA Knobel B Keller 2007 Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation Plant J 49 704 717
5. EV Boyko KS Gill L Mickelson-Young S Nasuda WJ Raupp 1999 A high-density genetic linkage map of Aegilopes tauschii, the D-genome progenitor of bread wheat Theor Appl Genet 99 16 26
6. TS Cox JH Hatchett 1994 Hessian fly resistance gene H26 transferred from Triticum tauschii to common wheat Crop Sci 34 958 960
7. SL Dellaporta J Wood JB Hicks 1983 A plant DNA minipreparation Version II Plant Mol Biol Rep 1 19 21
8. KM Devos MD Gale 1993 Extended genetic maps of the homoeologous group 3 chromosomes of wheat, rye, and barley Theor Appl Genet 85 649 652
9. M Dilbirligi M Erayman BT Campbell HS Randhawa PS Baenziger I Dweikat KS Gill 2006 High-density mapping and comparative analysis of agronomically important traits on wheat chromosome 3A Genomics 88 74 87
10. A Distelfeld C Uauy S Olmos A Schlatter J Dubcovsky T Fahima 2004 Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2 Funct Integr Genom 4 59 66
11. J Draper LAJ Mur G Jenkins GC Ghosh-Biswas P Bablak R Hasterok APM Routledge 2001 Brachypodium dystachyon: a new model system for functional genomics in grasses Plant Phys 127 1539 1555
12. J Ellis P Dodds T Pryor 2000 Structure, function and evolution of plant resistance genes Curr Opin Plant Biol 3 278 284
13. M Erayman D Sandhu D Sidhu M Dilbirligi PS Baenziger KS Gill 2004 Demarcating the gene-rich regions of the wheat genome Nucl Acids Res 32 3546 3565
14. T Foote S Griffiths S Allouis G Moore 2004 Construction and analysis of a BAC library in the grass Brachypodium sylvaticum and its use as a tool to bridge the gap between rice and wheat in elucidating gene content Funct Integr Genomics 4 26 33
15. ES Formusoh JH Hatchett BlackIV WC JJ Stuart 1996 Sex-linked inheritance of virulence against wheat resistance gene H9 in the Hessian fly (Diptera: Cecidomyiidae) Ann Entomol Soc Am 89 428 434
16. M Francki M Carter K Ryan A Hunter M Bellgard R Appels 2004 Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat Funct Integr Genomics 4 118 130
17. Gallun RL, Deay HO, Cartwright WB (1961) Four races of Hessian fly selected and developed from an Indiana population. Purdue University Agriculture Experiment Station Research Bulletin 732, West Lafayette, Indiana
18. KE Hammond-Kosack JDG Jones 1997 Plant disease resistance genes Annu Rev Plant Physiol Plant Mol Biol 48 575 607
19. R Hasterok A Marasek IS Donnison I Armstead A Thomas IP King E Wolny D Idziak J Draper G Jenkins 2006 Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescence in situ hybridization Genetics 173 349 362
20. N Huo G Lazo J Vogel D Coleman-Derr MC Luo R Thilmony DF Garvin OD Anderson Y-Q Gu 2006 Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics Genome 49 1099 1108
21. N Huo G Lazo J Vogel FM You Y Ma DM Hayden D Coleman-Derr TA Hill J Dvorak OD Anderson MC Luo Y-Q Gu 2008 The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences Funct Integr Genomics 8 135 147
22. Innis MA, Gelfand DH (1990) Optimization of PCR's. In: Innis MA, Gelfend DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, New York, pp 3-12
23. T Koba K Tsunewaki 1978 Mapping of the s and Ch2 genes on chromosome 3D of common wheat Wheat Inform Serv 45-46 18 20
24. DD Kosambi 1944 The estimation of map distances from recombination values Ann Eugen 12 172 175
25. CJ Kudagamage JE Foster PL Taylor BH Chen 1990 Biotypes of the Hessian fly (Diptera: Cecidomyiidae) identified in the southeastern United States J Entomol Sci 25 575 580
26. N Kurata G Moore Y Nagamura T Foote M Yano Y Minobe M Gale 1994 Conservation of genomic structure between rice and wheat Bio Technol 12 276 278
27. ES Lagudah O Moullet R Appels 1997 Map-based cloning of a gene sequence encoding a nucleotide-binding domain and a leucine-rich region at the Cre3 nematode resistance locus of wheat Genome 40 659 665
28. E Lander J Abrahamson A Barlow M Daly S Lincoln L Newburg P Green 1987 Mapmaker: a computer package for constructing genetic-linkage maps Cytogenet Cell Genet 46 642
29. WL Li JD Faris S Muthukrishnan DJ Liu PD Chen BS Gill 2001 Isolation and characterization of novel cDNA clones of acidic chitinase and β-1, 3-glucanase from wheat spikes infected by Fusarium graminearum Theor Appl Genet 102 353 362
30. SX Liu JA Anderson 2003 Targeted molecular mapping of a major wheat QTL for Fusarium head blight resistance using wheat ESTs and synteny with rice Genome 46 817 823
31. XM Liu GL Brown-Guedira JH Hatchett JO Owuoche MS Chen 2005 Genetic characterization and molecular mapping of a Hessian fly-resistance gene transferred from T. turgidum ssp. dicoccum to common wheat Theor Appl Genet 111 1308 1315
32. ZQ Ma BS Gill ME Sorrells SD Tanksley 1993 RFLP markers linked to Hessian fly-resistance genes in wheat (Triticum aestivum L.) from Triticum tauschii (Coss.) Schmal Theor Appl Genet 85 750 754
33. McIntosh RA, Yamazaki Y, Devos KM, Dubcovsky J, Rogers J, Appels R (2008) Catalogue of gene symbols for wheat. MacGene 2008. http://www.shigen.nig.ac.jp/ wheat/komugi/genes/download.jsp . Acessed on 02 Jan 2009
34. JD Munkvold RA Greene CE Bermudez-Kandianis CM La Rota H Edwards SF Sorrells T Dake D Benscher R Kantety AM Linkiewicz J Dubcovsky ED Akhunov J Dvořák GustafsonJP Miftahudin MS Pathan HT Nguyen DE Matthews S Chao GR Lazo DD Hummel OD Anderson JA Anderson JL Gonzalez-Hernandez JH Peng N Lapitan LL Qi B Echalier BS Gill KG Hossain V Kalavacharla SF Kianian D Sandhu M Erayman KS Gill PE McGuire CO Qualset ME Sorrells 2004 Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1 Genetics 168 639 650
35. JC Nelson AE Van Deynze E Autrique ME Sorrells YH Lu S Negre M Bernard P Leroy 1995 Molecular mapping of wheat homoeologous group 3 Genome 38 525 533
36. JH Peng NLV Capitan 2005 Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers Funct Integr Genom 5 80 96
37. LD Perugini JP Murphy D Marshall G Brown-Guedira 2008 Pm37, a new broadly effective powdery mildew resistance gene from Triticum timopheevii Theor Appl Genet 116 417 425
38. LL Qi B Echalier S Chao GR Lazo GE Butler OD Anderson ED Akhunov J Dvorak AM Linkiewicz A Ratnasiri J Dubcovsky CE Bermudez-Kandianis RA Greene R Kantety CM La Rota JD Munkvold SF Sorrells ME Sorrells M Dilbirligi D Sidhu M Erayman HS Randhawa D Sandhu SN Bondareva KS Gill AA Mahmoud XF Ma GustafsonJP Miftahudin EJ Conley V Nduati JL Gonzalez-Hernandez JA Anderson JH Peng NL Lapitan KG Hossain V Kalavacharla SF Kianian MS Pathan DS Zhang HT Nguyen DW Choi RD Fenton TJ Close PE McGuire CO Qualset BS Gill 2004 A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat Genetics 168 701 712
39. Ratcliffe RH, Hatchett JH (1997) Biology and genetics of the Hessian fly and resistance in wheat. In: Bondari K (ed) New developments in entomology. Research Signpost, Scientific Information Guild, Trivandram, India, pp 47-56
40. RH Ratcliffe GG Safranski FL Patterson HW Ohm PL Taylor 1994 Biotype status of Hessian fly (Diptera: Cecidomyiidae) populations from the eastern United States and their response to 14 Hessian fly resistance genes J Econ Entomol 87 1113 1121
41. MS Röder V Korzun K Wendehake J Plaschke M Tixier P Leroy MW Ganal 1998 A microsatellite map of wheat Genetics 149 2007 2023
42. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Akrawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana, Totawa, NJ, pp 365-386
43. N Sardesai JA Nemacheck S Subramanyam CE Williams 2005 Identification and mapping of H32, a new wheat gene conferring resistance to Hessian fly Theor Appl Genet 111 1167 1173
44. DJ Somers P Isaac K Edwards 2004 A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.) Theor Appl Genet 109 1105 1114
45. P Sourdille S Singh T Cadalen GL Brown-Guedira G Gay LL Qi BS Gill P Dufour A Murigneux M Bernard 2004 Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.) Funct Integr Genomics 4 12 25
46. JP Vogel Y-Q Gu P Twigg GR Lazo D Laudencia-Chingcuanco DM Hayden TJ Donze LA Vivian B Stamova D Coleman-Derr 2006 EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon Theor Appl Genet 113 186 195
47. T Wang SS Xu MO Harris J Hu L Liu X Cai 2006 Genetic characterization and molecular mapping of Hessian fly resistance genes derived from Aegilops tauschii in synthetic wheat Theor Appl Genet 113 611 618
48. DH Ware P Jaiswal J Ni IV Yap X Pan KY Clark L Teytelman SC Schmidt W Zhao K Chang S Cartinhour LD Stein SR McCouch 2002 Gramene, a tool for grass genomics Plant Physiol 130 1606 1613
49. CE Williams CC Collier N Sardesai HW Ohm SE Cambron 2003 Phenotypic assessment and mapped markers for H31, a new wheat gene conferring resistance to Hessian fly (Diptera: Cecidomyiidae) Theor Appl Genet 107 1516 1523
50. SS Xu X Cai T Wang MO Harris TL Friesen 2006 Registration of two synthetic hexaploid wheat germplasms resistant to Hessian fly Crop Sci 46 1401 1402
51. S Yoshimura U Yamanouchi Y Katayose S Toki Z-X Wang 1998 Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation Proc Natl Acad Sci USA 95 1663 1668
52. L Zantoko RH Shukle 1997 Genetics of virulence in the Hessian fly to resistance gene H13 in wheat J Hered 88 120 123
53. LY Zhang M Bernard P Leroy C Feuillet P Sourdille 2005 High transferability of bread wheat EST-derived SSRs to other cereals Theor Appl Genet 111 677 687