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Volumn 3, Issue 5, 2009, Pages 588-595

Grazing rates and functional diversity of uncultured heterotrophic flagellates

Author keywords

Functional diversity; Grazing rates; MAST 1C; MAST 4; Prey preference; Uncultured flagellates

Indexed keywords

BACTERIAL DNA; RNA 16S; SEA WATER;

EID: 67349125521     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2008.130     Document Type: Article
Times cited : (108)

References (43)
  • 1
    • 33947245554 scopus 로고    scopus 로고
    • Seasonality in bacterial diversity in north-west Mediterranean coastal waters: Assessment through clone libraries, fingerprinting and FISH
    • Alonso-Sáez L, Balagué V, Sà EL, Sánchez O, González JM, Pinhassi J et al. (2007). Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol Ecol 60: 98-112.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 98-112
    • Alonso-Sáez, L.1    Balagué, V.2    Sà, E.L.3    Sánchez, O.4    González, J.M.5    Pinhassi, J.6
  • 2
    • 0034802713 scopus 로고    scopus 로고
    • The problematic nature of fluorescently labeled bacteria (FLB) in Spumella feeding experiments - an explanation by using video microscopy
    • Boenigk J, Arndt H, Cleven EJ. (2001). The problematic nature of fluorescently labeled bacteria (FLB) in Spumella feeding experiments - an explanation by using video microscopy. Arch Hydrobiol 152: 329-338.
    • (2001) Arch Hydrobiol , vol.152 , pp. 329-338
    • Boenigk, J.1    Arndt, H.2    Cleven, E.J.3
  • 3
    • 33846992680 scopus 로고    scopus 로고
    • Differential thermal adaptation of clonal strains of a protist morphospecies originating from different climatic zones
    • Boenigk J, Jost S, Stoeck T, Garstecki T. (2007). Differential thermal adaptation of clonal strains of a protist morphospecies originating from different climatic zones. Environ Microbiol 9: 593-602.
    • (2007) Environ Microbiol , vol.9 , pp. 593-602
    • Boenigk, J.1    Jost, S.2    Stoeck, T.3    Garstecki, T.4
  • 5
    • 0028581798 scopus 로고
    • A comparison of the growth kinetics of six marine heterotrophic nanoflagellates fed with one bacterial species
    • Eccleston-Parry JD, Leadbeater BSC. (1994). A comparison of the growth kinetics of six marine heterotrophic nanoflagellates fed with one bacterial species. Mar Ecol Prog Ser 105: 167-177.
    • (1994) Mar Ecol Prog Ser , vol.105 , pp. 167-177
    • Eccleston-Parry, J.D.1    Leadbeater, B.S.C.2
  • 6
    • 38649124950 scopus 로고    scopus 로고
    • Missing' protists: A molecular prospective
    • Epstein S, López-García P. (2008). 'Missing' protists: a molecular prospective. Biodivers Conserv 17: 261-276.
    • (2008) Biodivers Conserv , vol.17 , pp. 261-276
    • Epstein, S.1    López-García, P.2
  • 7
    • 40849116272 scopus 로고    scopus 로고
    • Evaluating the flow-cytometric nucleic acid double-staining protocol in realistic situations of planktonic bacterial death
    • Falcioni T, Papa S, Gasol JM. (2008). Evaluating the flow-cytometric nucleic acid double-staining protocol in realistic situations of planktonic bacterial death. Appl Environ Microbiol 74: 1767-1779.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1767-1779
    • Falcioni, T.1    Papa, S.2    Gasol, J.M.3
  • 8
    • 0001399305 scopus 로고
    • Ecology of heterotrophic microflagel-lates. II. Bioenergetics and growth
    • Fenchel T. (1982). Ecology of heterotrophic microflagel-lates. II. Bioenergetics and growth. Mar Ecol Prog Ser 8: 225-231.
    • (1982) Mar Ecol Prog Ser , vol.8 , pp. 225-231
    • Fenchel, T.1
  • 9
    • 0003875967 scopus 로고
    • Ecology of Protozoa: The Biology of Free-Living Phagotrophic Protists
    • Springer: Berlin
    • Fenchel T. (1987). Ecology of Protozoa: The Biology of Free-Living Phagotrophic Protists. Brock/Springer Series in Contemporary Bioscience, Springer: Berlin.
    • (1987) Brock/Springer Series in Contemporary Bioscience
    • Fenchel, T.1
  • 10
    • 0025199039 scopus 로고
    • Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates
    • González JM, Sherr EB, Sherr BF. (1990). Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates. Appl Environ Microbiol 56: 583-589.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 583-589
    • González, J.M.1    Sherr, E.B.2    Sherr, B.F.3
  • 11
    • 0027333386 scopus 로고
    • Differential feeding by marine flagellates on growing versus starving, and on motile versus nonmotile, bacterial prey
    • González JM, Sherr EB, Sherr BF. (1993). Differential feeding by marine flagellates on growing versus starving, and on motile versus nonmotile, bacterial prey. Mar Ecol Prog Ser 102: 257-267.
    • (1993) Mar Ecol Prog Ser , vol.102 , pp. 257-267
    • González, J.M.1    Sherr, E.B.2    Sherr, B.F.3
  • 12
    • 0035490892 scopus 로고    scopus 로고
    • Resolution of viable and membrane-compromised bacteria in freshwater and marine waters based on analytical flow cytometry and nucleic acid double staining
    • Grégori G, Citterio S, Ghiani A, Labra M, Sgorbati S, Brown S et al. (2001). Resolution of viable and membrane-compromised bacteria in freshwater and marine waters based on analytical flow cytometry and nucleic acid double staining. Appl Environ Microbiol 67: 4662-4670.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4662-4670
    • Grégori, G.1    Citterio, S.2    Ghiani, A.3    Labra, M.4    Sgorbati, S.5    Brown, S.6
  • 13
    • 17144379264 scopus 로고    scopus 로고
    • Food selection by bacterivorous protists: Insight from the analysis of the food vacuole content by means of fluorescence in situ hybridization
    • Jezbera J, Hornak K, Simek K. (2005). Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of fluorescence in situ hybridization. FEMS Microbiol Ecol 52: 351-363.
    • (2005) FEMS Microbiol Ecol , vol.52 , pp. 351-363
    • Jezbera, J.1    Hornak, K.2    Simek, K.3
  • 14
    • 0036427039 scopus 로고    scopus 로고
    • Predation as a shaping force for the phenotypic and genotypic composition of planktonic bacteria
    • Jürgens K, Matz C. (2002). Predation as a shaping force for the phenotypic and genotypic composition of planktonic bacteria. Antonie van Leeuwenhoek 81: 413-434.
    • (2002) Antonie van Leeuwenhoek , vol.81 , pp. 413-434
    • Jürgens, K.1    Matz, C.2
  • 15
    • 84891336156 scopus 로고    scopus 로고
    • Protistan grazing on marine bacterioplankton
    • Kirchman DL ed, 2nd edn. Wiley: New York, pp
    • Jürgens K, Massana R. (2008). Protistan grazing on marine bacterioplankton. In: Kirchman DL (ed). Microbial Ecology of the Oceans, 2nd edn. Wiley: New York, pp 383-441.
    • (2008) Microbial Ecology of the Oceans , pp. 383-441
    • Jürgens, K.1    Massana, R.2
  • 16
    • 0036207009 scopus 로고    scopus 로고
    • The ecology of Cytophaga-Flavobacteria in aquatic environments
    • Kirchman DL. (2002). The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 91-100
    • Kirchman, D.L.1
  • 17
  • 18
    • 0006483135 scopus 로고    scopus 로고
    • The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification in coastal water samples and enrichment cultures
    • Lim EL, Dennet MR, Caron DA. (1999). The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification in coastal water samples and enrichment cultures. Limnol Oceanogr 44: 37-51.
    • (1999) Limnol Oceanogr , vol.44 , pp. 37-51
    • Lim, E.L.1    Dennet, M.R.2    Caron, D.A.3
  • 19
    • 0031399514 scopus 로고    scopus 로고
    • Measurement of bacterial size via image analysis of epifluorescence preparations: Description of an inexpensive system and solutions to some of the most common problems
    • Mar
    • Massana R. Gasol JM, Bjørnsen PK, Blackburn N, Haström Å, Hietanen S et al. (1997). Measurement of bacterial size via image analysis of epifluorescence preparations: description of an inexpensive system and solutions to some of the most common problems. Sci Mar 61: 397-407.
    • (1997) Sci , vol.61 , pp. 397-407
    • Massana, R.1    Gasol, J.M.2    Bjørnsen, P.K.3    Blackburn, N.4    Haström, A.5    Hietanen, S.6
  • 20
    • 0036727272 scopus 로고    scopus 로고
    • Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean
    • Massana R, Guillou L, Diez B, Pedrós-Alió C. (2002). Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean. Appl Environ Microbiol 68: 4554-4558.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 4554-4558
    • Massana, R.1    Guillou, L.2    Diez, B.3    Pedrós-Alió, C.4
  • 21
    • 33746757776 scopus 로고    scopus 로고
    • Distribution and abundance of uncultured heterotrophic flagellates in the world oceans
    • Massana R, Terrado R, Forn I, Lovejoy C, Pedrós-Alió C. (2006a). Distribution and abundance of uncultured heterotrophic flagellates in the world oceans. Environ Microbiol 8: 1515-1522.
    • (2006) Environ Microbiol , vol.8 , pp. 1515-1522
    • Massana, R.1    Terrado, R.2    Forn, I.3    Lovejoy, C.4    Pedrós-Alió, C.5
  • 22
    • 33845899987 scopus 로고    scopus 로고
    • Growth of uncultured heterotrophic flagellates in unamended seawater incubations
    • Massana R, Guillou L, Terrado R, Forn I, Pedrós-Alió C. (2006b). Growth of uncultured heterotrophic flagellates in unamended seawater incubations. Aquat Microb Ecol 45: 171-180.
    • (2006) Aquat Microb Ecol , vol.45 , pp. 171-180
    • Massana, R.1    Guillou, L.2    Terrado, R.3    Forn, I.4    Pedrós-Alió, C.5
  • 23
    • 0035140769 scopus 로고    scopus 로고
    • Effects of hydrophobic and electrostatic cell surface properties of bacteria on feeding rates of heterotrophic nanoflagellates
    • Matz C, Jürgens K. (2001). Effects of hydrophobic and electrostatic cell surface properties of bacteria on feeding rates of heterotrophic nanoflagellates. Appl Environ Microbiol 67: 814-820.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 814-820
    • Matz, C.1    Jürgens, K.2
  • 24
    • 13544271693 scopus 로고    scopus 로고
    • High motility reduces grazing mortality of planktonic bacteria
    • Matz C, Jürgens K. (2005). High motility reduces grazing mortality of planktonic bacteria. Appl Environ Microbiol 71: 921-929.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 921-929
    • Matz, C.1    Jürgens, K.2
  • 25
    • 4143071332 scopus 로고    scopus 로고
    • Comparison of the numerical grazing response of two marine heterotrophic nanoflagellates fed with different bacteria
    • Mohapatra BR, Fukami K. (2004). Comparison of the numerical grazing response of two marine heterotrophic nanoflagellates fed with different bacteria. J Sea Res 52: 99-107.
    • (2004) J Sea Res , vol.52 , pp. 99-107
    • Mohapatra, B.R.1    Fukami, K.2
  • 26
    • 0035252376 scopus 로고    scopus 로고
    • Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
    • Moon-van der Staay SY, De Wachter R, Vaulot D. (2001). Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607-610.
    • (2001) Nature , vol.409 , pp. 607-610
    • Moon-van der Staay, S.Y.1    De Wachter, R.2    Vaulot, D.3
  • 27
    • 3242795220 scopus 로고    scopus 로고
    • A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the Western English Channel
    • Not F, Latasa M, Marie D, Cariou T, Vaulot D, Simon N. (2004). A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the Western English Channel. Appl Environ Microbiol 70: 4064-4072.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4064-4072
    • Not, F.1    Latasa, M.2    Marie, D.3    Cariou, T.4    Vaulot, D.5    Simon, N.6
  • 28
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler A, Pernthaler J, Amann R. (2002). Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Env Microbiol 68: 3094-3101.
    • (2002) Appl Env Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 29
    • 33751536386 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
    • Paul JH ed, Academic Press: London, pp
    • Pernthaler J, Glöckner FO, Schönhuber W, Amann R. (2001). Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. In: Paul JH (ed). Marine Microbiology. Academic Press: London, pp 207-226.
    • (2001) Marine Microbiology , pp. 207-226
    • Pernthaler, J.1    Glöckner, F.O.2    Schönhuber, W.3    Amann, R.4
  • 30
    • 21344473000 scopus 로고    scopus 로고
    • Predation on prokaryotes in the water column and its ecological implications
    • Pernthaler J. (2005). Predation on prokaryotes in the water column and its ecological implications. Nat Rev Microbiol 3: 537-546.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 537-546
    • Pernthaler, J.1
  • 31
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter KG, Feig YS. (1980). The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25: 943-948.
    • (1980) Limnol Oceanogr , vol.25 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 33
    • 0027091904 scopus 로고
    • Relationships between bacteria and heterotrophic nanoplankton in marine and fresh waters: An inter-ecosystem comparison
    • Sanders RW, Caron DA, Berninger UG. (1992). Relationships between bacteria and heterotrophic nanoplankton in marine and fresh waters: an inter-ecosystem comparison. Mar Ecol Prog Ser 86: 1-14.
    • (1992) Mar Ecol Prog Ser , vol.86 , pp. 1-14
    • Sanders, R.W.1    Caron, D.A.2    Berninger, U.G.3
  • 34
    • 33846661022 scopus 로고    scopus 로고
    • Prey food quality affects flagellate ingestion rates
    • Shannon SP, Chrzanowski TH, Grover JP. (2007). Prey food quality affects flagellate ingestion rates. Microb Ecol 53: 66-73.
    • (2007) Microb Ecol , vol.53 , pp. 66-73
    • Shannon, S.P.1    Chrzanowski, T.H.2    Grover, J.P.3
  • 35
    • 0001483381 scopus 로고
    • Use of monodispersed, fluorescently labeled bacteria to estimate in situ protozoan bacterivory
    • Sherr BF, Sherr EB, Fallon RD. (1987). Use of monodispersed, fluorescently labeled bacteria to estimate in situ protozoan bacterivory. Appl Environ Microbiol 53: 958-965.
    • (1987) Appl Environ Microbiol , vol.53 , pp. 958-965
    • Sherr, B.F.1    Sherr, E.B.2    Fallon, R.D.3
  • 36
    • 0036422782 scopus 로고    scopus 로고
    • Significance of predation by protists in aquatic microbial food webs
    • Sherr EB, Sherr BF. (2002). Significance of predation by protists in aquatic microbial food webs. Antonie van Leeuwenhoek 81: 293-308.
    • (2002) Antonie van Leeuwenhoek , vol.81 , pp. 293-308
    • Sherr, E.B.1    Sherr, B.F.2
  • 37
    • 0000793975 scopus 로고
    • Effect of fixation on particle retention by microflagellates: Underestimation of grazing rates
    • Sieracki ME, Haas LW, Caron DA, Lessard EJ. (1987). Effect of fixation on particle retention by microflagellates: underestimation of grazing rates. Mar Ecol Prog Ser 38: 251-258.
    • (1987) Mar Ecol Prog Ser , vol.38 , pp. 251-258
    • Sieracki, M.E.1    Haas, L.W.2    Caron, D.A.3    Lessard, E.J.4
  • 38
    • 6344249161 scopus 로고    scopus 로고
    • Role of diatom-attached choanoflagellate of the genus Salpingoeca as pelagic bacterivores
    • Simek K, Jezbera J, Hornák K, Vrba J, Sed'a J. (2004). Role of diatom-attached choanoflagellate of the genus Salpingoeca as pelagic bacterivores. Aquat Microb Ecol 36: 257-269.
    • (2004) Aquat Microb Ecol , vol.36 , pp. 257-269
    • Simek, K.1    Jezbera, J.2    Hornák, K.3    Vrba, J.4    Sed'a, J.5
  • 39
    • 0002132256 scopus 로고    scopus 로고
    • Bacterivory: Interactions between bacteria and their grazers
    • Kirchman DL ed, Wiley-Liss Inc: New York, pp
    • Strom SL. (2000). Bacterivory: interactions between bacteria and their grazers. In: Kirchman DL (ed). Microbial Ecology of the Oceans. Wiley-Liss Inc: New York, pp 351-386.
    • (2000) Microbial Ecology of the Oceans , pp. 351-386
    • Strom, S.L.1
  • 40
    • 34250801449 scopus 로고    scopus 로고
    • Significant year-round effect of small mixotrophic flagellates on bacterioplankton in an oligotrophic coastal system
    • Unrein F, Massana R, Alonso-Sáez L, Gasol JM. (2007). Significant year-round effect of small mixotrophic flagellates on bacterioplankton in an oligotrophic coastal system. Limnol Oceanogr 52: 456-469.
    • (2007) Limnol Oceanogr , vol.52 , pp. 456-469
    • Unrein, F.1    Massana, R.2    Alonso-Sáez, L.3    Gasol, J.M.4
  • 41
    • 0024283307 scopus 로고
    • A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemi-luminescent and enzyme labeled synthetic oligodeox-yribonucleotide probes
    • Urdea MS, Warner BD, Running JA, Stempien M, Clyne J, Horn T. (1988). A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemi-luminescent and enzyme labeled synthetic oligodeox-yribonucleotide probes. Nucleic Acids Res 16: 4937-4956.
    • (1988) Nucleic Acids Res , vol.16 , pp. 4937-4956
    • Urdea, M.S.1    Warner, B.D.2    Running, J.A.3    Stempien, M.4    Clyne, J.5    Horn, T.6
  • 42
    • 0028166274 scopus 로고
    • Grazing rates on bacteria: The significance of methodology and ecological factors
    • Vaqué D, Gasol JM, Marrasé C. (1994). Grazing rates on bacteria: the significance of methodology and ecological factors. Mar Ecol Prog Ser 109: 263-274.
    • (1994) Mar Ecol Prog Ser , vol.109 , pp. 263-274
    • Vaqué, D.1    Gasol, J.M.2    Marrasé, C.3
  • 43
    • 0036603651 scopus 로고    scopus 로고
    • Are autotrophs less diverse than heterotrophs in marine picoplankton?
    • Vaulot D, Romari K, Not F. (2002). Are autotrophs less diverse than heterotrophs in marine picoplankton? Trends Microbiol 10: 266-267.
    • (2002) Trends Microbiol , vol.10 , pp. 266-267
    • Vaulot, D.1    Romari, K.2    Not, F.3


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