Phylogeny of the Neotropical genus Acestrorhynchus (Ostariophysi: Characiformes) based on nuclear and mitochondrial gene sequences and morphology: A total evidence approach

Molecular Phylogenetics and Evolution

Volumn 52, Issue 2, 2009, Pages 312-320

  Pretti, Vania Q ^a   Calcagnotto, Daniela ^a   Toledo Piza, Mônica ^a   de Almeida Toledo, Lurdes F ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

Acestrorhynchus; Phylogeny; Systematics; Total evidence

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; FISH; GENETICS; HISTOLOGY; INTRON; MITOCHONDRIAL GENE; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT; SOUTH AMERICA; SPECIES DIFFERENCE;

ANIMALS; CELL NUCLEUS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; FISHES; GENES, MITOCHONDRIAL; INTRONS; MODELS, GENETIC; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOUTH AMERICA; SPECIES SPECIFICITY;

ACESTRORHYNCHIDAE; ACESTRORHYNCHUS; ACESTRORHYNCHUS LACUSTRIS; CHARACIFORMES; OSTARIOPHYSI; PISCES;

EID: 67349117805     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.12.025     Document Type: Article

References (26)

1. Baker A., Yu X., and DeSalle R. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Mol. Phyl. Evol. 9 (1998) 427-436
2. Baker R., and DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46 (1997) 654-673
3. Bremer K. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42 (1988) 795-803
4. Bremer K. Branch support and tree stability. Cladistics 10 (1994) 295-304
5. Calcagnotto D., Schaefer S.A., and DeSalle R. Relationships among Characiform fishes inferred from analysis of nuclear and mitochondrial gene sequences. Mol. Phyl. Evol. 36 1 (2005) 135-153
6. Chow S., and Hazama K. Universal PCR primers for S7 ribosomal protein gene introns in fish. Mol. Ecol. 7 (1998) 1247-1263
7. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
8. Kocher T.D., Thomas W.K., Meyer A., Edwards S.V., Pââbo S., Villablanca F.X., and Wilson A.C. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA 86 (1989) 6196-6200
9. López-Fernández H., and Winemiller K.O. Morphological variation in Acestrorhynchus microlepis and A. falcatus (Characiformes: Acestrorynchidae), reassessment of A. apurensis and distribution of Acestrorhynchus in Venezuela. Ichthyol. Explor. Freshw. 14 3 (2003) 193-208
10. Lucena C., and Menezes N.A. A phylogenetic analysis of Roestes Günther and Gilbertolus Eigenmann, with a hypothesis on the relationships of the Cynodontidae and Acestrorhynchidae (Teleostei: Ostariophysi: Characiformes). In: Malabarba L.R., Reis R.E., Vari R.P., Lucena Z.M.S., and Lucena C.A.S. (Eds). Phylogeny and Classification of Neotropical Fishes (1998), Edipucrs, Porto Alegre 261-278
11. Menezes N.A. Systematics and evolution of the tribe Acestrorhynchini (Pisces, Characidae). Arq. Zool. 18 (1969) 1-150
12. Menezes N.A., and Géry J. Seven new Acestrorhynchin characid species (Osteichthyes, Ostariophysi, Characiformes) with comments on the systematics of the group. Rev. Suisse Zool. 90 (1983) 563-592
13. Menezes N.A. Redefinição taxonômica das espécies de Acestrorhynchus do grupo lacustris com a descrição de uma nova espécie (Osteichthyes, Characiformes, Characidae). Comun. Mus. Ciênc. sér. Zool. 5 5 (1992) 39-54
14. Menezes N.A. Acestrorhynchidae. In: Reis R.E., Kullander S.O., and Ferraris Jr. C.J. (Eds). Check List of the Freshwater Fishes of South and Central America (2003), Edipucrs, Porto Alegre 231-233
15. Menezes, N.A., 2007. Família Acestrorhynchidae. In: Buckup, P.A., Menezes, N.A., Ghazzi, M.S. (Eds.), Museu Nacional, série Livros 23, Rio de Janeiro, pp. 62-63.
16. Nelson J.S. Fishes of the World (2006), John Wiley & Sons, Inc., New Jersey
17. Ortí G., and Meyer A. The radiation of Characiform fishes and the limits of resolution of mitochondrial ribosomal DNA sequences. Syst. Biol. 46 (1997) 75-100
18. Palumbi S.R. Nucleic acids II: the polymerase chain reaction. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular Systematics (1996), Sinauer Associates Inc., Sunderland, MA, USA
19. In: Reis R.E., Kullander S.O., and Ferraris Jr. C.J. (Eds). Check List of the Freshwater Fishes of South and Central America (2003), Edipucrs, Porto Alegre
20. Remsen J., and O'Grady P. Phylogeny of Drosophilinae (Diptera: Drosophilidae), with comments on combined analysis and character support. Mol. Phyl. Evol. 24 (2002) 249-264
21. Sivasundar A., Bermingham E., and Ortí G. Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers. Mol. Ecol. 10 (2001) 407-417
22. Sorenson M.D. TreeRot, version 2 (1999), Boston University Press, Boston
23. Swofford D.L. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4 (2000), Sinauer Associates, Sunderland
24. Toledo-Piza M., and Menezes N.A. Taxonomic redefinition of the species of Acestrorhynchus of the microlepis group with the description of Acestrorhynchus apurensis, a new species from Venezuela (Ostariophysi: Characiformes: Characidae). Am. Mus. Novitates 3160 (1996) 1-23
25. Toledo-Piza M. Phylogenetic relationships among Acestrorhynchus species (Ostariophysi: Characiformes: Acestrorhynchidae). Zool. J. Linn. Soc. 151 (2007) 691-757
26. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882