Promoter anchored amplified polymorphism based on random amplified polymorphic DNA (PAAP-RAPD) in cotton

Euphytica

Volumn 167, Issue 3, 2009, Pages 281-291

  Pang, Mingxiong ^a   Percy, R G ^b   Hughs, Ed ^c   Zhang, Jinfa ^a  

^a NEW MEXICO STATE UNIVERSITY   (United States)

^b SOUTHERN PLAINS AGRICULTURAL RESEARCH CENTER   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Cotton; Molecular markers; Promoter anchored amplified polymorphism (PAAP)

Indexed keywords

EMBRYOPHYTA; GOSSYPIUM HIRSUTUM; PIMA;

EID: 67349107488     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-008-9850-y     Document Type: Article

References (24)

1. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 10.1093/nar/25.17.3389 (Pubitemid 27359211)
2. DRLW Botstein M Skolnick RW Davis 1980 Construction of a genetic linkage map in man using restriction fragment length polymorphisms Am J Hum Genet 32 314 331 (Pubitemid 11105557)
3. JEF Butler JT Kadonaga 2002 The RNA polymerase II core promoter: a key component in the regulation of gene expression Genes Dev 16 2583 2592 10.1101/gad.1026202
4. R Chenna H Sugawara T Koike R Lopez TJ Gibson DG Higgins JD Thompson 2003 Multiple sequence alignment with the clustal series of programs Nucleic Acids Res 31 3497 3500 10.1093/nar/gkg500 (Pubitemid 37442184)
5. C Dieterich H Wang K Rateitschak H Luz M Vingron 2003 CORG: a database for comparative regulatory genomics Nucleic Acids Res 31 55 57 10.1093/nar/gkg007 (Pubitemid 36150332)
6. W Dietrich H Katz SE Lincoln HS Shin J Friedman NL Dracopoli ES Lander 1992 A genetic map of the mouse suitable for typing intraspecific crosses Genetics 131 423 447 (Pubitemid 23053055)
7. H Hamada MG Petrino T Kakunaga 1982 A novel repeated element with Z-DNA-forming potential is widely found in evolutionarily diverse eukaryotic genomes Proc Natl Acad Sci USA 79 6465 6469 10.1073/pnas.79.21.6465 (Pubitemid 13207515)
8. K Higo Y Ugawa M Iwamoto T Korenaga 1999 Plant cis-acting regulatory DNA elements (PLACE) database Nucleic Acids Res 27 297 300 10.1093/nar/27.1.297 (Pubitemid 29209466)
9. J Hu BA Vick 2003 Target region amplification polymorphism: a novel marker technique for plant genotyping Plant Mol Biol Rep 21 289 294 10.1007/BF02772804 (Pubitemid 39238983)
10. M Jakoby A Schnittger 2004 Cell cycle and differentiation Curr Opin Plant Biol 7 661 669 10.1016/j.pbi.2004.09.015 (Pubitemid 39379509)
11. CJ Jones KJ Edwards S Castaglione MO Winfield F Sala C van de Wiel G Bredemeijer B Vosman M Matthes A Daly R Brettschneider P Bettini M Buiatti E Maestri A Malcevschi N Marmiroli R Aert G Volckaert J Rueda R Linacero A Vazquez A Karp 1997 Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories Mol Breed 3 381 390 10.1023/A:1009612517139 (Pubitemid 127507208)
12. G Kreiman 2004 Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes Nucleic Acids Res 32 2889 2900 10.1093/nar/gkh614 (Pubitemid 38885958)
13. M Lescot P Dehais G Thijs K Marchal Y Moreau Y Van de Peer P Rouze S Rombauts 2002 Plant CARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Nucleic Acids Res 30 325 327 10.1093/nar/30.1.325 (Pubitemid 34685468)
14. G Li CF Quiros 2001 Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica Theor Appl Genet 103 455 461 10.1007/s001220100570 (Pubitemid 32770199)
15. T Perez J Albornoz A Dominguez 1998 An evaluation of RAPD fragment reproducibility and nature Mol Ecol 7 1347 1357 10.1046/j.1365-294x.1998.00484.x (Pubitemid 28472043)
16. TT Pohar H Sun RV Davuluri 2004 HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development Nucleic Acids Res 32 D86 D90 10.1093/nar/gkh056 (Pubitemid 38081610)
17. S Salvi R Tuberosa 2005 To clone or not to clone plant QTLs: present and future challenges Trends Plant Sci 10 297 304 10.1016/j.tplants.2005.04.008 (Pubitemid 40793516)
18. CD Schmid V Praz M Delorenzi R Perier P Bucher 2004 The eukaryotic promoter database EPD: the impact of in silico primer extension Nucleic Acids Res 32 D82 D85 10.1093/nar/gkh122 (Pubitemid 38081609)
19. M Seki M Narusaka A Kamiya J Ishida M Satou T Sakurai M Nakajima A Enju K Akiyama Y Oono M Muramatsu Y Hayashizaki J Kawai P Carninci M Itoh Y Ishii T Arakawa K Shibata A Shinagawa K Shinozaki 2002 Functional annotation of a full-length Arabidopsis cDNA collection Science 296 141 145 10.1126/science. 1071006 (Pubitemid 34280073)
20. P Vos R Hogers M Bleeker M Reijans Lee Tvd M Hornes A Friters J Pot J Paleman M Kuiper M Zabeau 1995 AFLP: a new technique for DNA fingerprinting Nucleic Acids Res 23 4407 4414 10.1093/nar/23.21.4407 (Pubitemid 26079174)
21. Weising K, Nybom H, Wolff K, Kahl G (2005) DNA fingerprinting in plants: principles, methods, and applications. 2nd edn. CRC Press
22. J Welsh M McClelland 1990 Fingerprinting genomes using PCR with arbitrary primers Nucleic Acids Res 18 7213 7218 10.1093/nar/18.24.7213 (Pubitemid 120006020)
23. JGK Williams AR Kubelik KJ Livak JA Rafalski SV Tingey 1990 DNA polymorphisms amplified by arbitrary primers are useful as genetic markers Nucleic Acids Res 18 6531 6535 10.1093/nar/18.22.6531 (Pubitemid 20386578)
24. J Zhang JM Stewart 2000 Economical and rapid method for extracting cotton genomic DNA J Cotton Sci 4 193 201 (Pubitemid 38908024)