Phylogenetic relationships of Sardinian cave salamanders, genus Hydromantes, based on mitochondrial and nuclear DNA sequence data

Molecular Phylogenetics and Evolution

Volumn 51, Issue 2, 2009, Pages 399-404

  van der Meijden, Arie ^a   Chiari, Ylenia ^b   Mucedda, Mauro ^c   Carranza, Salvador ^d   Corti, Claudia ^e   Veith, Michael ^a  

^a UNIVERSITY OF TRIER   (Germany)

^b YALE UNIVERSITY   (United States)

^c Gruppo Speleologico Sassarese   (Italy)

^d INSTITUTE OF EVOLUTIONARY BIOLOGY CSIC UNIVERSITAT POMPEU FABRA   (Spain)

^e UNIVERSITY OF FLORENCE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

AMPHIBIA; ANIMAL; ARTICLE; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; GENETICS; ITALY; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT;

ANIMALS; CELL NUCLEUS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; ITALY; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; URODELA;

HYDROMANTES; SALAMANDROIDEA;

EID: 67349105000     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.12.011     Document Type: Article

References (29)

1. Brinkmann H., and Philippe H. Animal phylogeny and large-scale sequencing: progress and pitfalls. J. Syst. Evol. 46 3 (2008) 274-286
2. Caccone A., Milinkovitch M.C., Sbordoni V., and Powell J.R. Molecular biogeography: using the Corsica-Sardinia microplate disjunction to calibrate mitochondrial rDNA evolutionary rates in mountain newts (Euproctus). J. Evol. Biol. 7 (1994) 227-245
3. Carranza S., Romano A., Arnold E.N., and Sotgiu G. Biogeography and evolution of European cave salamanders, Hydromantes (Urodela: Plethodontidae), inferred from mtDNA sequences. J. Biogeogr. 35 4 (2007) 724-738
4. Cimmaruta R., Nascetti G., Forti G., Lanza B., and Bullini L. Paleogeografia della Sardegna ed evoluzione degli Hydromantes (Amphibia, Plethodontidae). Biogeographia XIX 1997 (1998) 183-195
5. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 5 (2004) 1792-1797
6. Farris J.S., Kallersjo M., Kluge A.G., and Bult C. Testing significance of incongruence. Cladistics 10 (1994) 315-319
7. Grill A., Casula P., Lecis R., and Menken S.B.J. Endemism in Sardinia. In: Weiss S., and Ferrand N. (Eds). Phylogeography of Southern European Refugia (2007), Springer, Dordrecht, The Netherlands 273-296
8. Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
9. Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
10. Jackman T.R., Applebaum G., and Wake D.B. Phylogenetic relationships of bolitoglossine salamanders: a demonstration of the effects of combining morphological and molecular data sets. Mol. Biol. Evol. 14 (1997) 883-891
11. Lanza B. Ipotesi sulle origini del popolamento erpetologico della Sardegna. Lav. Soc. Ital. Biogeog. (N.S.) 8 (1983) 723-744
12. Lanza, B., Caputo, V. Nascetti, G., Bullini, L., 1995. Morphologic and genetic studies of the European plethodontid salamanders: taxonomic inferences (genus Hydromantes). Monografie XVI, Museo Regionale di Scienze Naturali, Torino.
13. Lanza B., Pastorelli C., Laghi P., and Cimmaruta R. A review of systematics, taxonomy, genetics, biogeography and natural history of the genus Speleomantes DUBOIS, 1984 (Amphibia Caudata Plethodontidae). Atti. Mus. Stor. Nat. Trieste (Suppl.) 52 (2005) 5-135
14. Marra A.C. Pleistocene mammals of Mediterranean islands. Quatern. Int. 129 (2004) 5-14
15. Van der Meijden A., Vences M., Hoegg S., Boistel R., Channing A., and Meyer A. Nuclear gene phylogeny of narrow-mouthed toads (Family Microhylidae) and a discussion of competing hypotheses concerning their biogeographical origins. Mol. Phylogenet. Evol. 44 3 (2007) 1017-1030
16. Van der Meijden A., Vences M., Hoegg S., and Meyer A. A previously unrecognized radiation of ranid frogs in Southern Africa revealed by nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 37 3 (2005) 674-685
17. Nardi I. Cytogenetics of the European plethodontid salamanders, genus Hydromantes. In: Green D.M., and Sessions S.K. (Eds). Amphibian Cytogenetics and Evolution (1991), Academic Press Inc., San Diego, CA 131-151
18. Nascetti I., Cimmaruta R., Lanza B., and Bullini L. Molecular taxonomy of European plethodontid salamanders (genus Hydromantes). J. Herpetol. 30 (1996) 161-183
19. Oliverio M., Bologna M.A., and Mariottini P. Molecular biogeography of the Mediterranean lizard Podarcis Wagler, 1830 and Teira Gray, 1838 (Reptilia, Lacertidae). J. Biogeogr. 27 (2000) 1403-1420
20. Omodeo P., and Rota E. Earthworm diversity and land evolution in three Mediterranean districts. Proc. Calif. Acad. Sci., Fourth Series, Suppl. I 59 5 (2008) 65-83
21. Oosterbroek P., and Arntzen J.W. Area-cladograms of circum-Mediterranean taxa in relation to Mediterranean paleogeography. J. Biogeogr. 19 (1992) 3-20
22. Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L., Grabowski, G., 1991. The Simple Fool's Guide to PCR, Version 2.0. University of Hawaii, 1991.
23. Pollock D.D., Zwickl D.J., McGuire J.A., and Hillis D.M. Increased taxon sampling is advantageous for phylogenetic inference. Syst. Biol. 51 4 (2002) 664-671
24. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 9 (1998) 817-818
25. Swofford D.L. PAUP*. Phylogenetic Analysis using Parsimony (*and Other Methods) (2002), Sinauer Associates, Sunderland, MA
26. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
27. Vieites D.R., Min M.-S., and Wake D.B. Rapid diversification and dispersal during periods of global warming by plethodontid salamanders. Proc. Natl. Acad. Sci. USA 104 (2007) 19903-19907
28. Wake D.B., Maxson L.R., and Wurst G.Z. Genetic differentiation, albumin evolution, and their biogeographic implications in plethodontid salamanders of California and southern Europe. Evolution 32 (1978) 529-539
29. Wiens J.J., Fetzner J.W., Parkinson C.L., and Reeder T.W. Hylid frog phylogeny and sampling strategies for speciose clades. Syst. Biol. 5 (2005) 719-748