메뉴 건너뛰기




Volumn 391, Issue 1, 2009, Pages 1-10

A single nucleotide polymorphism melt curve assay employing an intercalating dye probe fluorescence resonance energy transfer for forensic analysis

Author keywords

Dye; Forensics; FRET; Melt curve analysis; Multiple; Probe; SNP

Indexed keywords

DNA; DNA SEQUENCES; DYEING; ELECTRIC CURRENT MEASUREMENT; ENERGY TRANSFER; FLUOROPHORES; FORENSIC SCIENCE; FORSTER RESONANCE ENERGY TRANSFER; GENES; NUCLEOTIDES; POLYMORPHISM; PROBES;

EID: 67349104997     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2009.05.003     Document Type: Article
Times cited : (8)

References (27)
  • 1
    • 0842306977 scopus 로고    scopus 로고
    • An assessment of whether SNPs will replace STRs in national DNA databases: joint considerations of the DNA Working Group of the European Network of Forensic Science Institutes (ENFSI) and the Scientific Working Group on DNA Analysis Methods (SWGDAM)
    • Gill P., Werrett D.J., Budowle B., and Guerrieri R. An assessment of whether SNPs will replace STRs in national DNA databases: joint considerations of the DNA Working Group of the European Network of Forensic Science Institutes (ENFSI) and the Scientific Working Group on DNA Analysis Methods (SWGDAM). Sci. Justice 44 (2004) 51-53
    • (2004) Sci. Justice , vol.44 , pp. 51-53
    • Gill, P.1    Werrett, D.J.2    Budowle, B.3    Guerrieri, R.4
  • 2
    • 0035010640 scopus 로고    scopus 로고
    • Automation in genotyping of single nucleotide polymorphisms
    • Gut I.G. Automation in genotyping of single nucleotide polymorphisms. Hum. Mutat. 17 (2001) 475-492
    • (2001) Hum. Mutat. , vol.17 , pp. 475-492
    • Gut, I.G.1
  • 3
    • 0035776497 scopus 로고    scopus 로고
    • Methods for genotyping single nucleotide polymorphisms
    • Kwok P.Y. Methods for genotyping single nucleotide polymorphisms. Annu. Rev. Genomics Hum. Genet. 2 (2001) 235-258
    • (2001) Annu. Rev. Genomics Hum. Genet. , vol.2 , pp. 235-258
    • Kwok, P.Y.1
  • 4
    • 0030059841 scopus 로고    scopus 로고
    • Rapid detection of mitochondrial sequence polymorphisms using multiplex solid-phase fluorescent minisequencing
    • Tully G., Sullivan K.M., Nixon P., Stones R.E., and Gill P. Rapid detection of mitochondrial sequence polymorphisms using multiplex solid-phase fluorescent minisequencing. Genomics 34 (1996) 107-113
    • (1996) Genomics , vol.34 , pp. 107-113
    • Tully, G.1    Sullivan, K.M.2    Nixon, P.3    Stones, R.E.4    Gill, P.5
  • 6
    • 0036140170 scopus 로고    scopus 로고
    • Mitochondrial sequence analysis for forensic identification using pyrosequencing technology
    • Andréasson H., Asp A., Alderborn A., Gyllensten U., and Allen M. Mitochondrial sequence analysis for forensic identification using pyrosequencing technology. BioTechniques 32 (2002) 124-133
    • (2002) BioTechniques , vol.32 , pp. 124-133
    • Andréasson, H.1    Asp, A.2    Alderborn, A.3    Gyllensten, U.4    Allen, M.5
  • 7
    • 0031568919 scopus 로고    scopus 로고
    • Product differentiation by analysis of DNA melting curves during the polymerase chain reaction
    • Ririe K.M., Rasmussen R.P., and Wittwer C.T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem. 245 (1997) 154-160
    • (1997) Anal. Biochem. , vol.245 , pp. 154-160
    • Ririe, K.M.1    Rasmussen, R.P.2    Wittwer, C.T.3
  • 8
    • 3042651880 scopus 로고    scopus 로고
    • Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons
    • Liew M., Pryor R., Palais R., Meadows C., Erali M., Lyon E., and Wittwer C. Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin. Chem. 50 (2004) 1156-1164
    • (2004) Clin. Chem. , vol.50 , pp. 1156-1164
    • Liew, M.1    Pryor, R.2    Palais, R.3    Meadows, C.4    Erali, M.5    Lyon, E.6    Wittwer, C.7
  • 9
    • 0025944267 scopus 로고
    • DNA probes: applications of the principles of nucleic acid hybridization
    • Wetmur J.G. DNA probes: applications of the principles of nucleic acid hybridization. Crit. Rev. Biochem. Mol. Biol. 26 (1991) 227-259
    • (1991) Crit. Rev. Biochem. Mol. Biol. , vol.26 , pp. 227-259
    • Wetmur, J.G.1
  • 10
    • 33644548649 scopus 로고    scopus 로고
    • Amplicon DNA melting analysis for mutation scanning and genotyping: cross-platform comparison of instruments and dyes
    • Herrmann M.G., Durtschi J.D., Bromley L.K., Wittwer C.T., and Voelkerding K.V. Amplicon DNA melting analysis for mutation scanning and genotyping: cross-platform comparison of instruments and dyes. Clin. Chem. 52 (2006) 494-503
    • (2006) Clin. Chem. , vol.52 , pp. 494-503
    • Herrmann, M.G.1    Durtschi, J.D.2    Bromley, L.K.3    Wittwer, C.T.4    Voelkerding, K.V.5
  • 12
    • 4644245816 scopus 로고    scopus 로고
    • Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis
    • Reed G.H., and Wittwer C.T. Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin. Chem. 50 (2004) 1748-1754
    • (2004) Clin. Chem. , vol.50 , pp. 1748-1754
    • Reed, G.H.1    Wittwer, C.T.2
  • 13
    • 0025861818 scopus 로고
    • Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase
    • Holland P.M., Abramson R.D., Watson R., and Gelfand D.H. Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc. Natl. Acad. Sci. USA 88 (1991) 7276-7280
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 7276-7280
    • Holland, P.M.1    Abramson, R.D.2    Watson, R.3    Gelfand, D.H.4
  • 15
    • 0031695438 scopus 로고    scopus 로고
    • Homogeneous multiplex genotyping of hemochromatosis mutations with fluorescent hybridization probes
    • Bernard P.S., Ajioka R.S., Kushner J.P., and Wittwer C.T. Homogeneous multiplex genotyping of hemochromatosis mutations with fluorescent hybridization probes. Am. J. Pathol. 153 (1998) 1055-1061
    • (1998) Am. J. Pathol. , vol.153 , pp. 1055-1061
    • Bernard, P.S.1    Ajioka, R.S.2    Kushner, J.P.3    Wittwer, C.T.4
  • 16
    • 54949131313 scopus 로고    scopus 로고
    • A real-time multiplex SNP melting assay to discriminate individuals
    • Nicklas J.A., and Buel E. A real-time multiplex SNP melting assay to discriminate individuals. J. Forensic Sci. 53 (2008) 1316-1324
    • (2008) J. Forensic Sci. , vol.53 , pp. 1316-1324
    • Nicklas, J.A.1    Buel, E.2
  • 17
    • 25444491205 scopus 로고    scopus 로고
    • High-resolution DNA melting analysis for simultaneous mutation scanning and genotyping in solution
    • Zhou L., Wang L., Palais R., Pryor R., and Wittwer C.T. High-resolution DNA melting analysis for simultaneous mutation scanning and genotyping in solution. Clin. Chem. 51 (2005) 1770-1777
    • (2005) Clin. Chem. , vol.51 , pp. 1770-1777
    • Zhou, L.1    Wang, L.2    Palais, R.3    Pryor, R.4    Wittwer, C.T.5
  • 18
    • 3242742969 scopus 로고    scopus 로고
    • Closed-tube genotyping with unlabeled oligonucleotide probes and a saturating DNA dye
    • Zhou L., Myers A.N., Vandersteen J.G., Wang L., and Wittwer C.T. Closed-tube genotyping with unlabeled oligonucleotide probes and a saturating DNA dye. Clin. Chem. 50 (2004) 1328-1335
    • (2004) Clin. Chem. , vol.50 , pp. 1328-1335
    • Zhou, L.1    Myers, A.N.2    Vandersteen, J.G.3    Wang, L.4    Wittwer, C.T.5
  • 19
    • 52049113295 scopus 로고    scopus 로고
    • SNP genotyping by unlabeled probe melting analysis
    • Erali M., Palais R., and Wittwer C. SNP genotyping by unlabeled probe melting analysis. Methods Mol. Biol. 429 (2008) 199-206
    • (2008) Methods Mol. Biol. , vol.429 , pp. 199-206
    • Erali, M.1    Palais, R.2    Wittwer, C.3
  • 20
    • 0036737631 scopus 로고    scopus 로고
    • IFRET: an improved fluorescence system for DNA-melting analysis
    • Howell W.M., Jobs M., and Brookes A.J. IFRET: an improved fluorescence system for DNA-melting analysis. Genome Res. 12 (2002) 1401-1407
    • (2002) Genome Res. , vol.12 , pp. 1401-1407
    • Howell, W.M.1    Jobs, M.2    Brookes, A.J.3
  • 21
    • 36048956112 scopus 로고    scopus 로고
    • Detection of DNA hybridization using induced fluorescence resonance energy transfer
    • Howell W.M. Detection of DNA hybridization using induced fluorescence resonance energy transfer. Methods Mol. Biol. 335 (2006) 33-41
    • (2006) Methods Mol. Biol. , vol.335 , pp. 33-41
    • Howell, W.M.1
  • 23
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia Jr. J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA 95 (1998) 1460-1465
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 24
    • 0034194135 scopus 로고    scopus 로고
    • Thermodynamic parameters for DNA sequences with dangling ends
    • Bommarito S., Peyret N., and SantaLucia Jr. J. Thermodynamic parameters for DNA sequences with dangling ends. Nucleic Acids Res. 28 (2000) 1929-1934
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1929-1934
    • Bommarito, S.1    Peyret, N.2    SantaLucia Jr., J.3
  • 26
    • 0030744542 scopus 로고    scopus 로고
    • The thermodynamic advantage of DNA oligonucleotide "stacking hybridization" reactions: energetics of a DNA nick
    • Lane M.J., Paner T., Kashin I., Faldasz B.D., Li B., Gallo F.J., and Benight A.S. The thermodynamic advantage of DNA oligonucleotide "stacking hybridization" reactions: energetics of a DNA nick. Nucleic Acids Res. 25 (1997) 611-617
    • (1997) Nucleic Acids Res. , vol.25 , pp. 611-617
    • Lane, M.J.1    Paner, T.2    Kashin, I.3    Faldasz, B.D.4    Li, B.5    Gallo, F.J.6    Benight, A.S.7
  • 27
    • 0028933039 scopus 로고
    • Optical melting of 128 octamer DNA duplexes: effects of base pair location and nearest neighbors on thermal stability
    • Doktycz M.J., Morris M.D., Dormady S.J., Beattie K.L., and Jacobson K.B. Optical melting of 128 octamer DNA duplexes: effects of base pair location and nearest neighbors on thermal stability. J. Biol. Chem. 270 (1995) 8439-8445
    • (1995) J. Biol. Chem. , vol.270 , pp. 8439-8445
    • Doktycz, M.J.1    Morris, M.D.2    Dormady, S.J.3    Beattie, K.L.4    Jacobson, K.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.