In-situ enrichment and analysis of atrazine-degrading microbial communities using atrazine-containing porous beads

Soil Biology and Biochemistry

Volumn 41, Issue 6, 2009, Pages 1331-1334

  Ghosh, Dhritiman ^a   Roy, Krishnakali ^a   Srinivasan, Velusamy ^a   Mueller, Tom ^a   Tuovinen, Olli H ^b   Sublette, Kerry ^c   Peacock, Aaron ^a   Radosevich, Mark ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

^b OHIO STATE UNIVERSITY   (United States)

^c The University of Tulsa Tulsa   (United States)

Author keywords

Atrazine; Bacteria; BioSep beads; Community; DGGE; Enrichment; FISH; Soil

Indexed keywords

ACTINOBACTERIA; AGRICULTURAL SOILS; ATRAZINE; ATRAZINE DEGRADATIONS; BACTERIAL ABUNDANCES; BACTERIAL COMMUNITIES; COMMUNITY; COMMUNITY COMPOSITIONS; DGGE; ENRICHMENT; IN CONTROLS; IN-SITU; MATRIXES; MICROBIAL COMMUNITIES; PLANCTOMYCETES; PROTEOBACTERIA;

BACTERIA; BACTERIOLOGY; DEGRADATION; SOILS;

HERBICIDES;

ABUNDANCE; AGRICULTURAL SOIL; ATRAZINE; BACTERIUM; BIODEGRADATION; BURIAL (GEOLOGY); COLONIZATION; COMMUNITY COMPOSITION; MICROBIAL COMMUNITY;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; PLANCTOMYCETES;

EID: 67349100133     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2008.12.027     Document Type: Article

References (22)

1. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16s rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Applied and Environmental Microbiology 56 (1990) 1919-1925
2. Cottrell M.T., and Kirchman D.L. Community composition of marine bacterioplankton determined by 16s rRNA gene clone libraries and fluorescence in situ hybridization. Applied and Environmental Microbiology 66 (2000) 5116-5122
3. de Souza M.L., Seffernick J., Martinez B., Sadowsky M.J., and Wackett L.P. The atrazine catabolism genes atzABC are widespread and highly conserved. Journal of Bacteriology 180 (1998) 1951-1954
4. Devers M., El Azhari N., Kolic N.U., and Martin-Laurent F. Detection and organization of atrazine-degrading genetic potential of seventeen bacterial isolates belonging to divergent taxa indicate a recent common origin of their catabolic functions. FEMS Microbiology Letters 273 (2007) 78-86
5. Gallaher K., and Mueller T.C. Effect of crop presence on persistence of atrazine, metribuzin, and clomazone in surface soil. Weed Science 44 (1996) 698-703
6. Ghosh D., Roy K., Williamson K.E., White D.C., Wommack K.E., Sublette K.L., and Radosevich M. Prevalence of lysogeny among soil bacteria and presence of 16s rRNA and trzN genes in viral-community DNA. Applied and Environmental Microbiology 74 (2008) 495-502
7. Glockner F.O., Fuchs B.M., and Amann R. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Applied and Environmental Microbiology 65 (1999) 3721-3726
8. Iwasaki A., Takagi K., Yoshioka Y., Fujii K., Kojima Y., and Harada N. Isolation and characterization of a novel simazine-degrading beta-proteobacterium and detection of genes encoding s-triazine-degrading enzymes. Pest Management Science 63 (2007) 261-268
9. Karner M., and Fuhrman J.A. Determination of active marine bacterioplankton: a comparison of universal 16s rRNA probes, autoradiography, and nucleoid staining. Applied and Environmental Microbiology 63 (1997) 1208-1213
10. Mandelbaum R.T., Allan D.L., and Wackett L.P. Isolation and characterization of a Pseudomonas sp. that mineralizes the s-triazine herbicide atrazine. Applied and Environmental Microbiology 61 (1995) 1451-1457
11. Manz W., Amann R., Ludwig W., Vancanneyt M., and Schleifer K.H. Application of a suite of 16s rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology 142 (1996) 1097-1106
12. Manz W., Amann R., Ludwig W., Wagner M., and Schleifer K.-H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Systematic and Applied Microbiology 15 (1992) 593-600
13. Marecik R., Kroliczak P., Czaczyk K., Bialas W., Olejnik A., and Cyplik P. Atrazine degradation by aerobic microorganisms isolated from the rhizosphere of sweet flag (Acorus calamus L.). Biodegradation 19 (2008) 293-301
14. Muyzer G., Dewaal E.C., and Uitterlinden A.G. Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16s ribosomal-RNA. Applied and Environmental Microbiology 59 (1993) 695-700
15. Neef A., Amann R., Schlesner H., and Schleifer K.H. Monitoring a widespread bacterial group: in situ detection of Planctomycetes with 16s rRNA-targeted probes. Microbiology 144 (1998) 3257-3266
16. Radosevich M., Traina S.J., Hao Y.L., and Tuovinen O.H. Degradation and mineralization of atrazine by a soil bacterial isolate. Applied and Environmental Microbiology 61 (1995) 297-302
17. Roller C., Wagner M., Amann R., Ludwig W., and Schleifer K.H. In situ probing of Gram-positive bacteria with high DNA G + C content using 23s rRNA-targeted oligonucleotides. Microbiology 140 (1994) 2849-2858
18. Rousseaux S., Hartmann A., and Soulas G. Isolation and characterisation of new Gram-negative and Gram-positive atrazine degrading bacteria from different French soils. FEMS Microbiology Ecology 36 (2001) 211-222
19. Solomon K.R., Baker D.B., Richards R.P., Dixon D.R., Klaine S.J., LaPoint T.W., Kendall R.J., Weisskeopf C.P., Giddings J.M., Giesy J.P., Hall L.W., and Williams W.M. Ecological risk assessment of atrazine in North American surface waters. Environmental Toxicology and Chemistry 15 (1996) 31-74
20. Strong L.C., McTavish H., Sadowsky M.J., and Wackett L.P. Field-scale remediation of atrazine-contaminated soil using recombinant Escherichia coli expressing atrazine chlorohydrolase. Environmental Microbiology 2 (2000) 91-98
21. Topp E., Mulbry W.M., Zhu H., Nour S.M., and Cuppels D. Characterization of s-triazine herbicide metabolism by a Nocardioides sp. isolated from agricultural soils. Applied and Environmental Microbiology 66 (2000) 3134-3141
22. Wagner M., and Horn M. The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Current Opinion in Biotechnology 17 (2006) 241-249