-
1
-
-
67349091702
-
Effect of taxon sampling on recovering the phylogeny of squamate reptiles based on complete mitochondrial genome and nuclear gene sequence data
-
doi:10.1016/j.gene.2008.05.014
-
Albert E.M., San Mauro D., Garcia-Paris M., Ruber L., and Zardoya R. Effect of taxon sampling on recovering the phylogeny of squamate reptiles based on complete mitochondrial genome and nuclear gene sequence data. Gene (2008-this issue) doi:10.1016/j.gene.2008.05.014
-
(2008)
Gene
-
-
Albert, E.M.1
San Mauro, D.2
Garcia-Paris, M.3
Ruber, L.4
Zardoya, R.5
-
2
-
-
14744302097
-
Mitochondrial genome of Pogona vitticepes (Reptilia; Agamidae): control region duplication and the origin of Australasian agamids
-
Amer S.A.M., and Kumazawa Y. Mitochondrial genome of Pogona vitticepes (Reptilia; Agamidae): control region duplication and the origin of Australasian agamids. Gene 346 (2005) 249-256
-
(2005)
Gene
, vol.346
, pp. 249-256
-
-
Amer, S.A.M.1
Kumazawa, Y.2
-
3
-
-
34548097611
-
The mitochondrial genome of the lizard Calotes versicolor and a novel gene inversion in South Asian draconine agamids
-
Amer S.A.M., and Kumazawa Y. The mitochondrial genome of the lizard Calotes versicolor and a novel gene inversion in South Asian draconine agamids. Mol. Biol. Evol. 24 (2007) 1330-1339
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1330-1339
-
-
Amer, S.A.M.1
Kumazawa, Y.2
-
5
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
Benton M.J., and Donoghue P.C.J. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 24 (2007) 26-53
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.J.2
-
6
-
-
0006429961
-
Biogeographical aspects of the distribution of Malagasy iguanids and their implications
-
Burghardt G.M., and Rand A.S. (Eds), Noyes Publications, Park Ridge, New Jersey
-
Blanc C.P. Biogeographical aspects of the distribution of Malagasy iguanids and their implications. In: Burghardt G.M., and Rand A.S. (Eds). Iguanas of the World (1982), Noyes Publications, Park Ridge, New Jersey 38-45
-
(1982)
Iguanas of the World
, pp. 38-45
-
-
Blanc, C.P.1
-
7
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
8
-
-
67349195214
-
Introduction
-
Burghardt G.M., and Rand A.S. (Eds), Noyes Publications, Park Ridge, New Jersey
-
Burghardt G.M., and Rand A.S. Introduction. In: Burghardt G.M., and Rand A.S. (Eds). Iguanas of the world (1982), Noyes Publications, Park Ridge, New Jersey 1-4
-
(1982)
Iguanas of the world
, pp. 1-4
-
-
Burghardt, G.M.1
Rand, A.S.2
-
9
-
-
23944461017
-
Complete mitochondrial DNA sequences of six snakes: phylogenetic relationships and molecular evolution of genomic features
-
Dong S., and Kumazawa Y. Complete mitochondrial DNA sequences of six snakes: phylogenetic relationships and molecular evolution of genomic features. J. Mol. Evol. 61 (2005) 12-22
-
(2005)
J. Mol. Evol.
, vol.61
, pp. 12-22
-
-
Dong, S.1
Kumazawa, Y.2
-
10
-
-
0003152759
-
The fossil record and early distribution of lizards
-
Rhodin A.G.J., and Miyata K. (Eds), Museum of Comparative Zoology, Harvard University, Cambridge, MA
-
Estes R. The fossil record and early distribution of lizards. In: Rhodin A.G.J., and Miyata K. (Eds). Advances in herpetology and evolutionary biology (1983), Museum of Comparative Zoology, Harvard University, Cambridge, MA 365-398
-
(1983)
Advances in herpetology and evolutionary biology
, pp. 365-398
-
-
Estes, R.1
-
11
-
-
0001249523
-
Iguanid lizard from Upper Cretaceous of Brazil
-
Estes R., and Price L.I. Iguanid lizard from Upper Cretaceous of Brazil. Science 180 (1973) 748-751
-
(1973)
Science
, vol.180
, pp. 748-751
-
-
Estes, R.1
Price, L.I.2
-
12
-
-
0002503798
-
Phylogenetic relationships within Squamata
-
Estes R., and Pregill G.K. (Eds), Stanford University Press, CA
-
Estes R., de Queiros K., and Gauthier J. Phylogenetic relationships within Squamata. In: Estes R., and Pregill G.K. (Eds). Phylogenetic relationships of the lizard families (1988), Stanford University Press, CA 119-282
-
(1988)
Phylogenetic relationships of the lizard families
, pp. 119-282
-
-
Estes, R.1
de Queiros, K.2
Gauthier, J.3
-
13
-
-
0000418006
-
A phylogeny of Iguanidae
-
Estes R., and Pregill G.K. (Eds), Stanford University Press, CA
-
Etheridge R., and de Queiroz K. A phylogeny of Iguanidae. In: Estes R., and Pregill G.K. (Eds). Phylogenetic relationships of the lizard families (1988), Stanford University Press, CA 283-368
-
(1988)
Phylogenetic relationships of the lizard families
, pp. 283-368
-
-
Etheridge, R.1
de Queiroz, K.2
-
14
-
-
5444251195
-
At the feet of the dinosaurs: the early history and radiation of lizards
-
Evans S.E. At the feet of the dinosaurs: the early history and radiation of lizards. Biol. Rev. 78 (2003) 513-551
-
(2003)
Biol. Rev.
, vol.78
, pp. 513-551
-
-
Evans, S.E.1
-
15
-
-
0032087259
-
Molecular evidence for the early history of living amphibians
-
Feller A.E., and Hedges S.B. Molecular evidence for the early history of living amphibians. Mol. Phylogenet. Evol. 9 (1998) 509-516
-
(1998)
Mol. Phylogenet. Evol.
, vol.9
, pp. 509-516
-
-
Feller, A.E.1
Hedges, S.B.2
-
16
-
-
0002069577
-
A phylogenetic analysis and taxonomy of iguanian lizards (Reptilia: Squamata)
-
Frost D.R., and Etheridge R. A phylogenetic analysis and taxonomy of iguanian lizards (Reptilia: Squamata). Univ. Kansas Mus. Nat. Hist. Misc. Publ. 81 (1989) 1-65
-
(1989)
Univ. Kansas Mus. Nat. Hist. Misc. Publ.
, vol.81
, pp. 1-65
-
-
Frost, D.R.1
Etheridge, R.2
-
17
-
-
0002933480
-
Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania (Squamata: Iguania)
-
Frost D.R., Etheridge R., Janies D., and Titus T.A. Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania (Squamata: Iguania). Am. Mus. Novit. 3343 (2001) 1-38
-
(2001)
Am. Mus. Novit.
, vol.3343
, pp. 1-38
-
-
Frost, D.R.1
Etheridge, R.2
Janies, D.3
Titus, T.A.4
-
18
-
-
0002116077
-
Iguanians from the Upper Cretaceous Djadochta Formation, Gobi Desert, China
-
Gao K., and Hou L. Iguanians from the Upper Cretaceous Djadochta Formation, Gobi Desert, China. J. Vert. Paleontol. 15 (1995) 57-78
-
(1995)
J. Vert. Paleontol.
, vol.15
, pp. 57-78
-
-
Gao, K.1
Hou, L.2
-
19
-
-
34547465760
-
Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1
-
Hugall A.F., Foster R., and Lee M.S. Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1. Syst. Biol. 56 (2007) 543-563
-
(2007)
Syst. Biol.
, vol.56
, pp. 543-563
-
-
Hugall, A.F.1
Foster, R.2
Lee, M.S.3
-
20
-
-
0035932330
-
The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): implications for amniote phylogeny
-
Janke A., Erpenbeck D., Nilsson M., and Arnason U. The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): implications for amniote phylogeny. Proc. R. Soc. Lond. B 268 (2001) 623-631
-
(2001)
Proc. R. Soc. Lond. B
, vol.268
, pp. 623-631
-
-
Janke, A.1
Erpenbeck, D.2
Nilsson, M.3
Arnason, U.4
-
21
-
-
11144311319
-
Mitochondrial DNA sequences of five squamates: phylogenetic affiliation of snakes
-
Kumazawa Y. Mitochondrial DNA sequences of five squamates: phylogenetic affiliation of snakes. DNA Res. 11 (2004) 137-144
-
(2004)
DNA Res.
, vol.11
, pp. 137-144
-
-
Kumazawa, Y.1
-
22
-
-
33845787944
-
Mitochondrial genomes from major lizard families suggest their phylogenetic relationships and ancient radiations
-
Kumazawa Y. Mitochondrial genomes from major lizard families suggest their phylogenetic relationships and ancient radiations. Gene 388 (2007) 19-26
-
(2007)
Gene
, vol.388
, pp. 19-26
-
-
Kumazawa, Y.1
-
23
-
-
0027482104
-
Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics
-
Kumazawa Y., and Nishida M. Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J. Mol. Evol. 37 (1993) 380-398
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 380-398
-
-
Kumazawa, Y.1
Nishida, M.2
-
24
-
-
11144329138
-
Mitochondrial genome of the Komodo dragon: efficient sequencing method with reptile-oriented primers and novel gene rearrangements
-
Kumazawa Y., and Endo H. Mitochondrial genome of the Komodo dragon: efficient sequencing method with reptile-oriented primers and novel gene rearrangements. DNA Res. 11 (2004) 115-125
-
(2004)
DNA Res.
, vol.11
, pp. 115-125
-
-
Kumazawa, Y.1
Endo, H.2
-
25
-
-
0031696736
-
The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions
-
Kumazawa Y., Ota H., Nishida M., and Ozawa T. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics 150 (1998) 313-329
-
(1998)
Genetics
, vol.150
, pp. 313-329
-
-
Kumazawa, Y.1
Ota, H.2
Nishida, M.3
Ozawa, T.4
-
26
-
-
0030966808
-
Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards
-
Macey J.R., Larson A., Ananjeva N.B., and Papenfuss T.J. Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards. J. Mol. Evol. 44 (1997) 660-674
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 660-674
-
-
Macey, J.R.1
Larson, A.2
Ananjeva, N.B.3
Papenfuss, T.J.4
-
27
-
-
33845252887
-
Vicariant origin of Malagasy reptiles supports Late Cretaceous Antarctic land bridge
-
Noonan B.P., and Chippindale P.T. Vicariant origin of Malagasy reptiles supports Late Cretaceous Antarctic land bridge. Am. Nat. 168 (2006) 730-741
-
(2006)
Am. Nat.
, vol.168
, pp. 730-741
-
-
Noonan, B.P.1
Chippindale, P.T.2
-
28
-
-
22944456598
-
-
Program distributed by the author. Evolutionary Biology Center, Uppsala University
-
Nylander, J.A.A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Center, Uppsala University (http://www.abc.se/~nylander/).
-
(2004)
MrModeltest v2
-
-
Nylander, J.A.A.1
-
29
-
-
0003757896
-
-
Pearson Education, London
-
Pough F.H., Andrews R.M., Cadle J.E., Crump M.L., Savitzky A.H., and Wells K.D. Herpetology. Third Edition (2004), Pearson Education, London
-
(2004)
Herpetology. Third Edition
-
-
Pough, F.H.1
Andrews, R.M.2
Cadle, J.E.3
Crump, M.L.4
Savitzky, A.H.5
Wells, K.D.6
-
30
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
31
-
-
0031593240
-
Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications
-
Sbisá E., Tanzariello F., Reyes A., Pesole G., and Saccone C. Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205 (1997) 125-140
-
(1997)
Gene
, vol.205
, pp. 125-140
-
-
Sbisá, E.1
Tanzariello, F.2
Reyes, A.3
Pesole, G.4
Saccone, C.5
-
32
-
-
0032241366
-
Molecular tests of phylogenetic taxonomies: a general procedure and example using four subfamilies of the lizard family Iguanidae
-
Schulte II J.A., Macey J.R., Larson A., and Papenfuss T.J. Molecular tests of phylogenetic taxonomies: a general procedure and example using four subfamilies of the lizard family Iguanidae. Mol. Phylogenet. Evol. 10 (1998) 367-376
-
(1998)
Mol. Phylogenet. Evol.
, vol.10
, pp. 367-376
-
-
Schulte II, J.A.1
Macey, J.R.2
Larson, A.3
Papenfuss, T.J.4
-
33
-
-
0141673120
-
Phylogenetic relationships within Iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards
-
Schulte II J.A., Valladares J.P., and Larson A. Phylogenetic relationships within Iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards. Herpetologica 59 (2003) 399-419
-
(2003)
Herpetologica
, vol.59
, pp. 399-419
-
-
Schulte II, J.A.1
Valladares, J.P.2
Larson, A.3
-
35
-
-
0031574072
-
The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
36
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne J.L., Kishino H., and Painter I.S. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15 (1998) 1647-1657
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1647-1657
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
37
-
-
9644269182
-
Molecular phylogenetics of Squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree
-
Townsend T.M., Larson A., Louis E., and Macey J.R. Molecular phylogenetics of Squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree. Syst. Biol. 53 (2004) 735-757
-
(2004)
Syst. Biol.
, vol.53
, pp. 735-757
-
-
Townsend, T.M.1
Larson, A.2
Louis, E.3
Macey, J.R.4
-
38
-
-
28044466648
-
The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes
-
Vidal N., and Hedges S.B. The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes. C.R. Biol. 328 (2005) 1000-1008
-
(2005)
C.R. Biol.
, vol.328
, pp. 1000-1008
-
-
Vidal, N.1
Hedges, S.B.2
-
39
-
-
0030683599
-
PAML: a program package for phylogenetic analyses by maximum likelihood
-
(http://abacus.gene.ucl.ac.uk/software/paml.html)
-
Yang Z. PAML: a program package for phylogenetic analyses by maximum likelihood. CABIOS 13 (1997) 555-556. http://abacus.gene.ucl.ac.uk/software/paml.html (http://abacus.gene.ucl.ac.uk/software/paml.html)
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
|