Microarray analysis reveals distinct signaling pathways transcriptionally activated by infection with bovine viral diarrhea virus in different cell types

Virus Research

Volumn 142, Issue 1-2, 2009, Pages 188-199

  Yamane, Daisuke ^a   Zahoor, Muhammad Atif ^a   Mohamed, Yassir Mahgoub ^a   Azab, Walid ^a   Kato, Kentaro ^a   Tohya, Yukinobu ^a   Akashi, Hiroomi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Apoptosis; ER stress; Microarray; Pestivirus; TRB3; Viperin

Indexed keywords

ASPARTATE AMMONIA LIGASE; CHEMOKINE; CYTOKINE; GROWTH ARREST AND DNA DAMAGE INDUCIBLE PROTEIN 153; INTERFERON; MITOGEN ACTIVATED PROTEIN KINASE; PROTEASOME; TOLL LIKE RECEPTOR; TRANSCRIPTION FACTOR; UBIQUITIN;

ANIMAL CELL; APOPTOSIS; ARTICLE; BOVINE DIARRHEA VIRUS; CATTLE DISEASE; CELL ADHESION; CELL CYCLE; CELL DIFFERENTIATION; CELL GROWTH; CONTROLLED STUDY; ENDOPLASMIC RETICULUM STRESS; EPITHELIUM CELL; FIBROBLAST; GENE; GENE EXPRESSION; IMMUNOMODULATION; LIPID METABOLISM; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; ONCOGENE; PRIORITY JOURNAL; TRANSCRIPTION INITIATION; TRIBBLES HOMOLOG 3 GENE; UNINDEXED SEQUENCE; UPREGULATION; VIRUS INFECTION;

ANIMALS; BOVINE VIRUS DIARRHEA-MUCOSAL DISEASE; CATTLE; CELL LINE; CELLS, CULTURED; DIARRHEA VIRUSES, BOVINE VIRAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; TRANSCRIPTION, GENETIC; UP-REGULATION;

BOVINAE; BOVINE VIRAL DIARRHEA VIRUS 1; PESTIVIRUS;

EID: 67349087988     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2009.02.015     Document Type: Article

References (56)

1. Adler B., Adler H., Pfister H., Jungi T.W., and Peterhans E. Macrophages infected with cytopathic bovine viral diarrhea virus release a factor(s) capable of priming uninfected macrophages for activation-induced apoptosis. J. Virol. 71 4 (1997) 3255-3258
2. Ashkenazi A., and Dixit V.M. Death receptors: signaling and modulation. Science 281 5381 (1998) 1305-1308
3. Baigent S.J., Zhang G., Fray M.D., Flick-Smith H., Goodbourn S., and McCauley J.W. Inhibition of beta interferon transcription by noncytopathogenic bovine viral diarrhea virus is through an interferon regulatory factor 3-dependent mechanism. J. Virol. 76 18 (2002) 8979-8988
4. Baker J.C. The clinical manifestations of bovine viral diarrhea infection. Vet. Clin. North Am. Food Anim. Pract. 11 3 (1995) 425-445
5. Barreca C., and O'Hare P. Suppression of herpes simplex virus 1 in MDBK cells via the interferon pathway. J. Virol. 78 16 (2004) 8641-8653
6. Bielefeldt-Ohmann H. The pathologies of bovine viral diarrhea virus infection. A window on the pathogenesis. Vet. Clin. North Am. Food Anim. Pract. 11 3 (1995) 447-476
7. Bogoyevitch M.A., Boehm I., Oakley A., Ketterman A.J., and Barr R.K. Targeting the JNK MAPK cascade for inhibition: basic science and therapeutic potential. Biochim. Biophys. Acta 1697 1-2 (2004) 89-101
8. Brownlie J., Clarke M.C., and Howard C.J. Experimental infection of cattle in early pregnancy with a cytopathic strain of bovine virus diarrhoea virus. Res. Vet. Sci. 46 3 (1989) 307-311
9. Charleston B., Fray M.D., Baigent S., Carr B.V., and Morrison W.I. Establishment of persistent infection with non-cytopathic bovine viral diarrhoea virus in cattle is associated with a failure to induce type I interferon. J. Gen. Virol. 82 Pt 8 (2001) 1893-1897
10. Chawla-Sarkar M., Lindner D.J., Liu Y.F., Williams B.R., Sen G.C., Silverman R.H., and Borden E.C. Apoptosis and interferons: role of interferon-stimulated genes as mediators of apoptosis. Apoptosis 8 3 (2003) 237-249
11. Chen Z., Gibson T.B., Robinson F., Silvestro L., Pearson G., Xu B., Wright A., Vanderbilt C., and Cobb M.H. MAP kinases. Chem. Rev. 101 8 (2001) 2449-2476
12. Eberwine J., Yeh H., Miyashiro K., Cao Y., Nair S., Finnell R., Zettel M., and Coleman P. Analysis of gene expression in single live neurons. Proc. Natl. Acad. Sci. U.S.A. 89 7 (1992) 3010-3014
13. Grummer B., Bendfeldt S., Wagner B., and Greiser-Wilke I. Induction of the intrinsic apoptotic pathway in cells infected with cytopathic bovine virus diarrhoea virus. Virus Res. 90 1-2 (2002) 143-153
14. Haskill S., Beg A.A., Tompkins S.M., Morris J.S., Yurochko A.D., Sampson-Johannes A., Mondal K., Ralph P., and Baldwin Jr. A.S. Characterization of an immediate-early gene induced in adherent monocytes that encodes I kappa B-like activity. Cell 65 7 (1991) 1281-1289
15. Helbig K.J., Lau D.T., Semendric L., Harley H.A., and Beard M.R. Analysis of ISG expression in chronic hepatitis C identifies viperin as a potential antiviral effector. Hepatology 42 3 (2005) 702-710
16. Hiscott J. Convergence of the NF-kappaB and IRF pathways in the regulation of the innate antiviral response. Cytokine Growth Factor Rev. 18 5-6 (2007) 483-490
17. Houe H. Epidemiology of bovine viral diarrhea virus. Vet. Clin. North Am. Food Anim. Pract. 11 3 (1995) 521-547
18. Irizarry R.A., Bolstad B.M., Collin F., Cope L.M., Hobbs B., and Speed T.P. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31 4 (2003) e15
19. Irizarry R.A., Hobbs B., Collin F., Beazer-Barclay Y.D., Antonellis K.J., Scherf U., and Speed T.P. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4 2 (2003) 249-264
20. Jiang D., Guo H., Xu C., Chang J., Gu B., Wang L., Block T.M., and Guo J.T. Identification of three interferon-inducible cellular enzymes that inhibit the replication of hepatitis C virus. J. Virol. 82 4 (2008) 1665-1678
21. Jordan R., Wang L., Graczyk T.M., Block T.M., and Romano P.R. Replication of a cytopathic strain of bovine viral diarrhea virus activates PERK and induces endoplasmic reticulum stress-mediated apoptosis of MDBK cells. J. Virol. 76 19 (2002) 9588-9599
22. Jung Y., Bang S., Choi K., Kim E., Kim Y., Kim J., Park J., Koo H., Moon R.T., Song K., and Lee I. TC1 (C8orf4) enhances the Wnt/beta-catenin pathway by relieving antagonistic activity of Chibby. Cancer Res. 66 2 (2006) 723-728
23. Kageshita T., Kashio Y., Yamauchi A., Seki M., Abedin M.J., Nishi N., Shoji H., Nakamura T., Ono T., and Hirashima M. Possible role of galectin-9 in cell aggregation and apoptosis of human melanoma cell lines and its clinical significance. Int. J. Cancer 99 6 (2002) 809-816
24. Kesson A.M., Cheng Y., and King N.J. Regulation of immune recognition molecules by flavivirus, West Nile. Viral Immunol. 15 2 (2002) 273-283
25. Keyse S.M. Dual-specificity MAP kinase phosphatases (MKPs) and cancer. Cancer Metastasis Rev. 27 2 (2008) 253-261
26. Lackner T., Muller A., Pankraz A., Becher P., Thiel H.J., Gorbalenya A.E., and Tautz N. Temporal modulation of an autoprotease is crucial for replication and pathogenicity of an RNA virus. J. Virol. 78 19 (2004) 10765-10775
27. Lamba J.K., Lin Y.S., Schuetz E.G., and Thummel K.E. Genetic contribution to variable human CYP3A-mediated metabolism. Adv. Drug Deliv. Rev. 54 10 (2002) 1271-1294
28. Leaman D.W., Chawla-Sarkar M., Vyas K., Reheman M., Tamai K., Toji S., and Borden E.C. Identification of X-linked inhibitor of apoptosis-associated factor-1 as an interferon-stimulated gene that augments TRAIL Apo2L-induced apoptosis. J. Biol. Chem. 277 32 (2002) 28504-28511
29. Lewis T.S., Shapiro P.S., and Ahn N.G. Signal transduction through MAP kinase cascades. Adv. Cancer Res. 74 (1998) 49-139
30. Liston P., Fong W.G., Kelly N.L., Toji S., Miyazaki T., Conte D., Tamai K., Craig C.G., McBurney M.W., and Korneluk R.G. Identification of XAF1 as an antagonist of XIAP anti-Caspase activity. Nat. Cell Biol. 3 2 (2001) 128-133
31. Loeb K.R., and Haas A.L. The interferon-inducible 15-kDa ubiquitin homolog conjugates to intracellular proteins. J. Biol. Chem. 267 11 (1992) 7806-7813
32. Muller-Doblies D., Ackermann M., and Metzler A. In vitro and in vivo detection of Mx gene products in bovine cells following stimulation with alpha/beta interferon and viruses. Clin. Diagn. Lab. Immunol. 9 6 (2002) 1192-1199
33. Neill J.D., and Ridpath J.F. Gene expression changes in BVDV2-infected MDBK cells. Biologicals 31 2 (2003) 97-102
34. Neill J.D., and Ridpath J.F. Increase in proto-oncogene mRNA transcript levels in bovine lymphoid cells infected with a cytopathic type 2 bovine viral diarrhea virus. Virus Res. 135 2 (2008) 326-331
35. Nobes C.D., Lauritzen I., Mattei M.G., Paris S., Hall A., and Chardin P. A new member of the Rho family, Rnd1, promotes disassembly of actin filament structures and loss of cell adhesion. J. Cell Biol. 141 1 (1998) 187-197
36. Nuwaysir E.F., Huang W., Albert T.J., Singh J., Nuwaysir K., Pitas A., Richmond T., Gorski T., Berg J.P., Ballin J., McCormick M., Norton J., Pollock T., Sumwalt T., Butcher L., Porter D., Molla M., Hall C., Blattner F., Sussman M.R., Wallace R.L., Cerrina F., and Green R.D. Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Res. 12 11 (2002) 1749-1755
37. Ohoka N., Yoshii S., Hattori T., Onozaki K., and Hayashi H. TRB3, a novel ER stress-inducible gene, is induced via ATF4-CHOP pathway and is involved in cell death. EMBO J. 24 6 (2005) 1243-1255
38. Okada T., Yoshida H., Akazawa R., Negishi M., and Mori K. Distinct roles of activating transcription factor 6 (ATF6) and double-stranded RNA-activated protein kinase-like endoplasmic reticulum kinase (PERK) in transcription during the mammalian unfolded protein response. Biochem. J. 366 Pt 2 (2002) 585-594
39. Payne D.M., Rossomando A.J., Martino P., Erickson A.K., Her J.H., Shabanowitz J., Hunt D.F., Weber M.J., and Sturgill T.W. Identification of the regulatory phosphorylation sites in pp42/mitogen-activated protein kinase (MAP kinase). EMBO J. 10 4 (1991) 885-892
40. Prechtel A.T., and Steinkasserer A. CD83: an update on functions and prospects of the maturation marker of dendritic cells. Arch. Dermatol. Res. 299 2 (2007) 59-69
41. Risatti G.R., Pomp D., and Donis R.O. Patterns of cellular gene expression in cells infected with cytopathic or non-cytopathic bovine viral diarrhea virus. Anim. Biotechnol. 14 1 (2003) 31-49
42. Robbins D.J., Zhen E., Owaki H., Vanderbilt C.A., Ebert D., Geppert T.D., and Cobb M.H. Regulation and properties of extracellular signal-regulated protein kinases 1 and 2 in vitro. J. Biol. Chem. 268 7 (1993) 5097-5106
43. Schweizer M., and Peterhans E. Oxidative stress in cells infected with bovine viral diarrhoea virus: a crucial step in the induction of apoptosis. J. Gen. Virol. 80 Pt 5 (1999) 1147-1155
44. Schweizer M., and Peterhans E. Noncytopathic bovine viral diarrhea virus inhibits double-stranded RNA-induced apoptosis and interferon synthesis. J. Virol. 75 10 (2001) 4692-4698
45. Shakhov A.N., Collart M.A., Vassalli P., Nedospasov S.A., and Jongeneel C.V. Kappa B-type enhancers are involved in lipopolysaccharide-mediated transcriptional activation of the tumor necrosis factor alpha gene in primary macrophages. J. Exp. Med. 171 1 (1990) 35-47
46. Singh-Gasson S., Green R.D., Yue Y., Nelson C., Blattner F., Sussman M.R., and Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat. Biotechnol. 17 10 (1999) 974-978
47. Smith K.D., and Ozinsky A. Toll-like receptor-5 and the innate immune response to bacterial flagellin. Curr. Top. Microbiol. Immunol. 270 (2002) 93-108
48. Thompson A.J., and Locarnini S.A. Toll-like receptors, RIG-I-like RNA helicases and the antiviral innate immune response. Immunol. Cell Biol. 85 6 (2007) 435-445
49. Vassilev V.B., and Donis R.O. Bovine viral diarrhea virus induced apoptosis correlates with increased intracellular viral RNA accumulation. Virus Res. 69 2 (2000) 95-107
50. Yamada Y., Pannell R., Forster A., and Rabbitts T.H. The oncogenic LIM-only transcription factor Lmo2 regulates angiogenesis but not vasculogenesis in mice. Proc. Natl. Acad. Sci. U.S.A. 97 1 (2000) 320-324
51. Yamada Y., Warren A.J., Dobson C., Forster A., Pannell R., and Rabbitts T.H. The T cell leukemia LIM protein Lmo2 is necessary for adult mouse hematopoiesis. Proc. Natl. Acad. Sci. U.S.A. 95 7 (1998) 3890-3895
52. Yamane D., Kato K., Tohya Y., and Akashi H. The double-stranded RNA-induced apoptosis pathway is involved in the cytopathogenicity of cytopathogenic bovine viral diarrhea virus. J. Gen. Virol. 87 Pt 10 (2006) 2961-2970
53. Yamane D., Kato K., Tohya Y., and Akashi H. The relationship between the viral RNA level and upregulation of innate immunity in spleen of cattle persistently infected with bovine viral diarrhea virus. Vet. Microbiol. 129 1-2 (2008) 69-79
54. Yamane D., Nagai M., Ogawa Y., Tohya Y., and Akashi H. Enhancement of apoptosis via an extrinsic factor, TNF-alpha, in cells infected with cytopathic bovine viral diarrhea virus. Microbes Infect. 7 15 (2005) 1482-1491
55. Yoneyama M., Kikuchi M., Matsumoto K., Imaizumi T., Miyagishi M., Taira K., Foy E., Loo Y.M., Gale Jr. M., Akira S., Yonehara S., Kato A., and Fujita T. Shared and unique functions of the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity. J. Immunol. 175 5 (2005) 2851-2858
56. Yount J.S., Moran T.M., and Lopez C.B. Cytokine-independent upregulation of MDA5 in viral infection. J. Virol. 81 13 (2007) 7316-7319