Transferability of cereal EST-SSR markers to ryegrass

Genome

Volumn 52, Issue 5, 2009, Pages 431-437

  Sim, Sung Chur ^a   Yu, Ju Kyung ^b,e   Jo, Young Ki ^c   Sorrells, Mark E ^b   Jung, Geunhwa ^d  

^a OHIO STATE UNIVERSITY   (United States)

^b Department of Obstetrics Gynecology   (United States)

^c TEXAS A AND M UNIVERSITY   (United States)

^d UNIVERSITY OF MASSACHUSETTS   (United States)

^e SYNGENTA CROP PROTECTION   (United States)

Author keywords

Comparative mapping; Lolium; Poaceae; Polymorphism; SSR marker; Transferability

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CHROMOSOME MAP; EXPRESSED SEQUENCE TAG; GENETIC POLYMORPHISM; GENETICS; LOLIUM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY;

BASE SEQUENCE; CHROMOSOME MAPPING; EXPRESSED SEQUENCE TAGS; LOLIUM; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; SEQUENCE HOMOLOGY, NUCLEIC ACID;

LOLIUM; POACEAE;

EID: 67149087101     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G09-019     Document Type: Article

References (22)

1. Eujayl, I., Sledge, M.K., Wang, L., May, G.D., Chekhovskiy, K., Zwonitzer, J.C., and Mian, M.A.R. 2004. Medicago truncatula EST-SSRs reveal cross-species genetic markers for Medicago spp. Theor. Appl. Genet. 108: 414-422. doi:10.1007/s00122-003-1450-6. PMID: 13679975.
2. Faville, M.J., Vecchies, A.C., Schreiber, M., Drayton, M.C., Hughes, L.J., Jones, E.S., et al. 2004. Functionally associated molecular genetic marker map construction in perennial ryegrass (Lolium perenne L.). Theor. Appl. Genet. 110: 12-32. doi: 10. 1007/s00122-004-1785-7. PMID: 15526086.
3. Hayward, M.D., Forster, J.W., Jones, J.G., Dolstra, O., Evans, C., McAdam, N.J., et al. 1998. Genetic analysis of Lolium. I. Identification of linkage groups and the establishment of a genetic map. Plant Breed. 117: 451-455. doi: 10.1111/j. 1439-0523.1998. tb01972.x.
4. Jiang, N., Bao, Z., Zhang, X., Eddy, S., and Wessler, S.R. 2004. Pack-MULE transposable elements mediate gene evolution in plants. Nature (Lond.), 431: 569-573. doi:10.1038/nature02953. PMID:15457261.
5. Jones, E.S., Mahoney, N.L., Hayward, M.D., Armstead, I.P., Jones, J.G., Humphreys, M.O., et al. 2002a. An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes. Genome, 45: 282-295. doi:10.1139/g01-144. PMID: 11962626.
6. Jones, E.S., Dupal, M.P., Dumsday, J.L., Hughes, L.J., and Forster, J.W. 2002b. An SSR-based genetic linkage map for perennial ryegrass (Lolium perenne L.). Theor. Appl. Genet. 105: 577-584. doi:10.1007/s00122- 002-0907-3. PMID: 12582507.
7. Kantety, R.V., Rota, M.L., Matthews, D.E., and Sorrells, M.E. 2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum, and wheat. Plant Mol. Biol. 48: 501-510. doi:10.1023/A:1014875206165. PMID: 11999831.
8. Kellogg, E.A. 2000. The grasses: a case study in macroevolution. Annu. Rev. Ecol. Syst. 31: 217-238. doi:10.1146/annurev. ecolsys.31.1.217.
9. Kosambi, D.D. 1944. The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
10. Lal, S.K., Giroux, M.J., Brendel, V., Vallejos, C.E., and Hannah, L.C. 2003. The maize genome contains a Helitron insertion. Plant Cell, 15: 381-391. doi:10.1105/tpc.008375. PMID: 12566579.
11. Muylle, H., Baert, J., Van Bockstaele, E., Pertijs, J., and Roldán-Ruiz, I. 2005. Four QTLs determine crown rust (Puccinia coro-nata f. sp. lolii) resistance in a perennial ryegrass (Lolium per-enne) population. Heredity, 95: 348-357. doi:10.1038/sj.hdy. 6800729. PMID:16118663.
12. Saha, M.C., Mian, M.A., Eujayl, I., Zwonitzer, J.C., Wang, L., and May, G.D. 2004. Tall fescue EST-SSR markers with transfer-ability across several grass species. Theor. Appl. Genet. 109: 783-791. doi:10.1007/s00122-004- 1681-1. PMID: 15205737.
13. SanMiguel, P., and Bennetzen, J.L. 1998. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. (Lond.), 82: 37-44. doi:10.1006/anbo.1998.0746.
14. Sim, S., Chang, T., Curley, J., Warnke, S.E., Barker, R.E., and Jung, G. 2005. Chromosomal rearrangements differentiating the ryegrass genome from the Triticeae, oat, and rice genomes using common heterologous RFLP probes. Theor. Appl. Genet. 110: 1011-1019. doi:10.1007/s00122-004-1916-1. PMID: 15742203.
15. Sim, S., Diesburg, K., Casler, M., and Jung, G. 2007. Mapping and comparative analysis of QTL for crown rust resistance in an Italian × perennial ryegrass population. Phytopathology, 97: 767-776. doi:10.1094/PHYTO-97-6-0767. PMID: 18943608.
16. Thorogood, D., Paget, M., Humphreys, M., Turner, L., Armstead, I., and Roderick, H. 2001. QTL analysis of crown rust resistance in perennial ryegrass - implications for breeding. Int. Turfgrass Soc. Res. J. 9: 218-223.
17. Varshney, R.K., Graner, A., and Sorrells, M.E. 2005a. Genic micro-satellite markers in plants: features and applications. Trends Bio-technol. 23: 48-55. doi:10.1016/j.tibtech.2004.11.005. PMID: 15629858.
18. Varshney, R.K., Sigmund, R., Borner, A., Korzun, V., Stein, N., Sorrells, M.E., et al. 2005b. Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice. Plant Sci. 168: 195-202. doi:10.1016/j.plantsci.2004. 08.001.
19. Warnke, S.E., Barker, R.E., Jung, G., Sim, S.C., Rouf Mian, M.A., Saha, M.C., et al. 2004. Genetic linkage mapping of an annual x perennial ryegrass population. Theor. Appl. Genet. 109: 294-304. doi:10.1007/s00122-004- 1647-3. PMID: 15071730.
20. Yu, J.K., Dake, T.M., Singh, S., Benscher, D., Li, W., Gill, B., and Sorrells, M.E. 2004. Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome, 47: 805-818. doi:10.1139/g04-057. PMID: 15499395.
21. Yu, J.K., Kantety, R.V., Graznak, E., Benscher, D., Tefera, H., and Sorrells, M.E. 2006. Construction of genetic linkage map of tef [Eragrostis tef (Zucc.) Trotter]. Theor. Appl. Genet. 113: 1093-1102. doi:10.1007/s00122-006-0369-0. PMID: 16900349.
22. Zhang, L.Y., Bernard, M., Leroy, P., Feuillet, C., and Sourdille, P. 2005. High transferability of bread wheat EST-derived SSRs to other cereals. Theor. Appl. Genet. 111: 677-687. doi:10.1007/s00122-005-2041-5. PMID: 16034582.