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Volumn 72, Issue 6, 2009, Pages 1334-1347

Cognate Site Identifier analysis reveals novel binding properties of the Sex Inducer homeodomain proteins of Cryptococcus neoformans

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN; HOMEODOMAIN PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SXI1ALPHA; TRANSCRIPTION FACTOR SXI2A; UNCLASSIFIED DRUG;

EID: 66949111397     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2009.06719.x     Document Type: Article
Times cited : (9)

References (50)
  • 2
    • 0031797155 scopus 로고    scopus 로고
    • Signal transduction pathways regulating differentiation and pathogenicity of Cryptococcus neoformans
    • DOI 10.1006/fgbi.1998.1079
    • Alspaugh, J.A., Perfect, J.R. Heitman, J. (1998) Signal transduction pathways regulating differentiation and pathogenicity of Cryptococcus neoformans. Fungal Genet Biol 25 : 1 14. (Pubitemid 28542557)
    • (1998) Fungal Genetics and Biology , vol.25 , Issue.1 , pp. 1-14
    • Alspaugh, J.A.1    Perfect, J.R.2    Heitman, J.3
  • 3
    • 0029884286 scopus 로고    scopus 로고
    • Heterodimerization between two classes of homeodomain proteins in the mushroom Coprinus cinereus brings together potential DNA-binding and activation domains
    • DOI 10.1016/0378-1119(96)00177-1
    • Asante-Owusu, R.N., Banham, A.H., Bohnert, H.U., Mellor, E.J. Casselton, L.A. (1996) Heterodimerization between two classes of homeodomain proteins in the mushroom Coprinus cinereus brings together potential DNA-binding and activation domains. Gene 172 : 25 31. (Pubitemid 26175761)
    • (1996) Gene , vol.172 , Issue.1 , pp. 25-31
    • Asante-Owusu, R.N.1    Banham, A.H.2    Bohnert, H.U.3    Mellor, E.J.C.4    Casselton, L.A.5
  • 5
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T.L. Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2 : 28 36.
    • (1994) Proc Int Conf Intell Syst Mol Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 7
    • 0035162172 scopus 로고    scopus 로고
    • Identification of genes in the bW/bE regulatory cascade in Ustilago maydis
    • DOI 10.1046/j.1365-2958.2001.02699.x
    • Brachmann, A., Weinzierl, G., Kamper, J. Kahmann, R. (2001) Identification of genes in the bW/bE regulatory cascade in Ustilago maydis. Mol Microbiol 42 : 1047 1063. (Pubitemid 33078386)
    • (2001) Molecular Microbiology , vol.42 , Issue.4 , pp. 1047-1063
    • Brachmann, A.1    Weinzierl, G.2    Kamper, J.3    Kahmann, R.4
  • 9
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • DOI 10.1101/gr.849004
    • Crooks, G.E., Hon, G., Chandonia, J.M. Brenner, S.E. (2004) WebLogo: a sequence logo generator. Genome Res 14 : 1188 1190. (Pubitemid 38811555)
    • (2004) Genome Research , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.-M.3    Brenner, S.E.4
  • 10
    • 40649108877 scopus 로고    scopus 로고
    • Sexual development in Cryptococcus neoformans requires CLP1, a target of the homeodomain transcription factors Sxi1α and Sxi2a
    • DOI 10.1128/EC.00377-07
    • Ekena, J.L., Stanton, B.C., Schiebe-Owens, J.A. Hull, C.M. (2008) Sexual development in Cryptococcus neoformans requires CLP1, a target of the homeodomain transcription factors Sxi1α and Sxi2a. Eukaryot Cell 7 : 49 57. (Pubitemid 351959593)
    • (2008) Eukaryotic Cell , vol.7 , Issue.1 , pp. 49-57
    • Ekena, J.L.1    Stanton, B.C.2    Schiebe-Owens, J.A.3    Hull, C.M.4
  • 11
    • 0031851485 scopus 로고    scopus 로고
    • Comparison of X-ray and NMR structures for the Antennapedia homeodomain- DNA complex
    • DOI 10.1038/1382
    • Fraenkel, E. Pabo, C.O. (1998) Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex. Nat Struct Biol 5 : 692 697. (Pubitemid 28359804)
    • (1998) Nature Structural Biology , vol.5 , Issue.8 , pp. 692-697
    • Fraenkel, E.1    Pabo, C.O.2
  • 14
    • 0023239424 scopus 로고
    • Homeoboxes in the study of development
    • Gehring, W.J. (1987) Homeoboxes in the study of development. Science 236 : 1245 1252.
    • (1987) Science , vol.236 , pp. 1245-1252
    • Gehring, W.J.1
  • 17
    • 0024296388 scopus 로고
    • A1 protein alters the DNA binding specificity of α2 repressor
    • Goutte, C. Johnson, A.D. (1988) a1 protein alters the DNA binding specificity of α2 repressor. Cell 52 : 875 882.
    • (1988) Cell , vol.52 , pp. 875-882
    • Goutte, C.1    Johnson, A.D.2
  • 18
    • 0027527069 scopus 로고
    • Yeast a1 and α2 homeodomain proteins form a DNA-binding activity with properties distinct from those of either protein
    • Goutte, C. Johnson, A.D. (1993) Yeast a1 and α2 homeodomain proteins form a DNA-binding activity with properties distinct from those of either protein. J Mol Biol 233 : 359 371.
    • (1993) J Mol Biol , vol.233 , pp. 359-371
    • Goutte, C.1    Johnson, A.D.2
  • 19
    • 0020739930 scopus 로고
    • Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site
    • Guarente, L. Mason, T. (1983) Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site. Cell 32 : 1279 1286.
    • (1983) Cell , vol.32 , pp. 1279-1286
    • Guarente, L.1    Mason, T.2
  • 20
    • 0036894726 scopus 로고    scopus 로고
    • Cell identity and sexual development in Cryptococcus neoformans are controlled by the mating-type-specific homeodomain protein SXI1α
    • DOI 10.1101/gad.1041402
    • Hull, C.M., Davidson, R.C. Heitman, J. (2002) Cell identity and sexual development in Cryptococcus neoformans are controlled by the mating-type-specific homeodomain protein Sxi1α. Genes Dev 16 : 3046 3060. (Pubitemid 35424192)
    • (2002) Genes and Development , vol.16 , Issue.23 , pp. 3046-3060
    • Hull, C.M.1    Davidson, R.C.2    Heitman, J.3
  • 21
    • 15244354604 scopus 로고    scopus 로고
    • Sex-specific homeodomain proteins Sxi1α and Sxi2a coordinately regulate sexual development in Cryptococcus neoformans
    • DOI 10.1128/EC.4.3.526-535.2005
    • Hull, C.M., Boily, M.-J. Heitman, J. (2005) Sex-specific homeodomain proteins Sxi1α and Sxi2a coordinately regulate sexual development in Cryptococcus neoformans. Eukaryot Cell 4 : 526 535. (Pubitemid 40383756)
    • (2005) Eukaryotic Cell , vol.4 , Issue.3 , pp. 526-535
    • Hull, C.M.1    Boily, M.-J.2    Heitman, J.3
  • 22
    • 0032589918 scopus 로고    scopus 로고
    • The yeast a1 and α2 homeodomain proteins do not contribute equally to heterodimeric DNA binding
    • Jin, Y., Zhong, H. Vershon, A.K. (1999) The yeast a1 and α2 homeodomain proteins do not contribute equally to heterodimeric DNA binding. Mol Cell Biol 19 : 585 593. (Pubitemid 29018460)
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.1 , pp. 585-593
    • Jin, Y.1    Zhong, H.2    Vershon, A.K.3
  • 23
    • 0022354870 scopus 로고
    • A repressor (MATα2 product) and its operator control expression of a set of cell type specific genes in yeast
    • Johnson, A.D. Herskowitz, I. (1985) A repressor (MATα2 product) and its operator control expression of a set of cell type specific genes in yeast. Cell 42 : 237 247. (Pubitemid 16237574)
    • (1985) Cell , vol.42 , Issue.1 , pp. 237-247
    • Johnson, A.D.1    Herskowitz, I.2
  • 24
    • 0024290441 scopus 로고
    • The yeast cell-type-specific repressor α2 acts cooperatively with a non-cell-type-specific protein
    • Keleher, C.A., Goutte, C. Johnson, A.D. (1988) The yeast cell-type-specific repressor α2 acts cooperatively with a non-cell-type-specific protein. Cell 53 : 927 936.
    • (1988) Cell , vol.53 , pp. 927-936
    • Keleher, C.A.1    Goutte, C.2    Johnson, A.D.3
  • 25
    • 0026572436 scopus 로고
    • Homeodomains and regulation of sexual development in basidiomycetes
    • Kues, U. Casselton, L.A. (1992) Homeodomains and regulation of sexual development in basidiomycetes. Trends Genet 8 : 154 155.
    • (1992) Trends Genet , vol.8 , pp. 154-155
    • Kues, U.1    Casselton, L.A.2
  • 26
    • 0027968435 scopus 로고
    • A chimeric homeodomain protein causes self-compatibility and constitutive sexual development in the mushroom Coprinus cinereus
    • Kues, U., Gottgens, B., Stratmann, R., Richardson, W.V., O'Shea, S.F. Casselton, L.A. (1994) A chimeric homeodomain protein causes self-compatibility and constitutive sexual development in the mushroom Coprinus cinereus. EMBO J 13 : 4054 4059. (Pubitemid 24275861)
    • (1994) EMBO Journal , vol.13 , Issue.17 , pp. 4054-4059
    • Kues, U.1    Gottgens, B.2    Stratmann, R.3    Richardson, W.V.J.4    O'Shea, S.F.5    Casselton, L.A.6
  • 27
    • 0026334016 scopus 로고
    • Genetic association of mating types and virulence in Cryptococcus neoformans
    • Kwon-Chung, K.J., Edman, J.C. Wickes, B.L. (1992) Genetic association of mating types and virulence in Cryptococcus neoformans. Infect Immun 60 : 602 605.
    • (1992) Infect Immun , vol.60 , pp. 602-605
    • Kwon-Chung, K.J.1    Edman, J.C.2    Wickes, B.L.3
  • 28
    • 0024157206 scopus 로고
    • Homeobox proteins as sequence-specific transcription factors
    • DOI 10.1016/0092-8674(88)90209-7
    • Levine, M. Hoey, T. (1988) Homeobox proteins as sequence-specific transcription factors. Cell 55 : 537 540. (Pubitemid 18279766)
    • (1988) Cell , vol.55 , Issue.4 , pp. 537-540
    • Levine, M.1    Hoey, T.2
  • 29
    • 0028828745 scopus 로고
    • Crystal structure of the MATa1/MATα2 homeodomain heterodimer bound to DNA
    • Li, T., Stark, M.R., Johnson, A.D. Wolberger, C. (1995) Crystal structure of the MATa1/MATα2 homeodomain heterodimer bound to DNA. Science 270 : 262 269.
    • (1995) Science , vol.270 , pp. 262-269
    • Li, T.1    Stark, M.R.2    Johnson, A.D.3    Wolberger, C.4
  • 30
    • 0021255982 scopus 로고
    • A conserved DNA sequence in homoeotic genes of the Drosophila antennapedia and bithorax complexes
    • McGinnis, W., Levine, M.S., Hafen, E., Kuroiwa, A. Gehring, W.J. (1984) A conserved DNA sequence in homoeotic genes of the Drosophila Antennapedia and bithorax complexes. Nature 308 : 428 433. (Pubitemid 14130914)
    • (1984) Nature , vol.308 , Issue.5958 , pp. 428-433
    • McGinnis, W.1    Levine, M.S.2    Hafen, E.3
  • 31
    • 0029898760 scopus 로고    scopus 로고
    • Extra specificity from extradenticle: The partnership between HOX and PBX/EXD homeodomain proteins
    • Mann, R.S. Chan, S.K. (1996) Extra specificity from extradenticle: the partnership between HOX and PBX/EXD homeodomain proteins. Trends Genet 12 : 258 262.
    • (1996) Trends Genet , vol.12 , pp. 258-262
    • Mann, R.S.1    Chan, S.K.2
  • 32
    • 0027479079 scopus 로고
    • The α-mating type locus of Cryptococcus neoformans contains a peptide pheromone gene
    • Moore, T.D.E. Edman, J.C. (1993) The α-mating type locus of Cryptococcus neoformans contains a peptide pheromone gene. Mol Cell Biol 13 : 1962 1970.
    • (1993) Mol Cell Biol , vol.13 , pp. 1962-1970
    • Moore, T.D.E.1    Edman, J.C.2
  • 33
    • 0342759569 scopus 로고
    • Isolation and sequence-specific DNA binding of the Antennapedia homeodomain
    • Muller, M., Affolter, M., Leupin, W., Otting, G., Wuthrich, K. Gehring, W.J. (1988) Isolation and sequence-specific DNA binding of the Antennapedia homeodomain. EMBO J 7 : 4299 4304.
    • (1988) EMBO J , vol.7 , pp. 4299-4304
    • Muller, M.1    Affolter, M.2    Leupin, W.3    Otting, G.4    Wuthrich, K.5    Gehring, W.J.6
  • 35
    • 60149092843 scopus 로고    scopus 로고
    • Austin, TX; New York. Landes Bioscience/Eurekah.com; Springer Science + Business Media.
    • Papageorgiou, S. (2007) HOX Gene Expression. Austin, TX; New York : Landes Bioscience/Eurekah.com; Springer Science + Business Media.
    • (2007) HOX Gene Expression.
    • Papageorgiou, S.1
  • 36
    • 0028142407 scopus 로고
    • Heterodimerization of the yeast homeodomain transcriptional regulators α2 and a1 induces an interfacial helix in α2
    • Phillips, C.L., Stark, M.R., Johnson, A.D. Dahlquist, F.W. (1994) Heterodimerization of the yeast homeodomain transcriptional regulators α2 and a1 induces an interfacial helix in α2. Biochemistry 33 : 9294 9302. (Pubitemid 24272881)
    • (1994) Biochemistry , vol.33 , Issue.31 , pp. 9294-9302
    • Phillips, C.L.1    Stark, M.R.2    Johnson, A.D.3    Dahlquist, F.W.4
  • 37
    • 0024407460 scopus 로고
    • The structure of the Antennapedia homeodomain determined by NMR spectroscopy in solution: Comparison with prokaryotic repressors
    • DOI 10.1016/0092-8674(89)90040-8
    • Qian, Y.Q., Billeter, M., Otting, G., Muller, M., Gehring, W.J. Wuthrich, K. (1989) The structure of the Antennapedia homeodomain determined by NMR spectroscopy in solution: comparison with prokaryotic repressors. Cell 59 : 573 580. (Pubitemid 19284470)
    • (1989) Cell , vol.59 , Issue.3 , pp. 573-580
    • Qian, Y.Q.1    Billeter, M.2    Otting, G.3    Muller, M.4    Gehring, W.J.5    Wuthrich, K.6
  • 38
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush, J. (2002) Microarray data normalization and transformation. Nat Genet 32 (Suppl. 496 501. (Pubitemid 35435152)
    • (2002) Nature Genetics , vol.32 , Issue.5 SUPPL. DEC. , pp. 496-501
    • Quackenbush, J.1
  • 39
    • 0033909813 scopus 로고    scopus 로고
    • Identification of a target gene for the bE-bW homeodomain protein complex in Ustilago maydis
    • DOI 10.1046/j.1365-2958.2000.01978.x
    • Romeis, T., Brachmann, A., Kahmann, R. Kamper, J. (2000) Identification of a target gene for the bE-bW homeodomain protein complex in Ustilago maydis. Mol Microbiol 37 : 54 66. (Pubitemid 30479357)
    • (2000) Molecular Microbiology , vol.37 , Issue.1 , pp. 54-66
    • Romeis, T.1    Brachmann, A.2    Kahmann, R.3    Kamper, J.4
  • 40
    • 0030947545 scopus 로고    scopus 로고
    • The homeodomains of the heterodimeric bE and bW proteins of Ustilago maydis are both critical for function
    • Schlesinger, R., Kahmann, R. Kamper, J. (1997) The homeodomains of the heterodimeric bE and bW proteins of Ustilago maydis are both critical for function. Mol Gen Genet 254 : 514 519.
    • (1997) Mol Gen Genet , vol.254 , pp. 514-519
    • Schlesinger, R.1    Kahmann, R.2    Kamper, J.3
  • 44
    • 0033559762 scopus 로고    scopus 로고
    • A trans-acting peptide activates the yeast a1 repressor by raising its DNA-binding affinity
    • Stark, M.R., Escher, D. Johnson, A.D. (1999) A trans-acting peptide activates the yeast a1 repressor by raising its DNA-binding affinity. EMBO J 18 : 1621 1629. (Pubitemid 29127074)
    • (1999) EMBO Journal , vol.18 , Issue.6 , pp. 1621-1629
    • Stark, M.R.1    Escher, D.2    Johnson, A.D.3
  • 45
    • 0019402928 scopus 로고
    • Control of cell type in yeast by the mating type locus. The α1-α2 hypothesis
    • DOI 10.1016/0022-2836(81)90488-5
    • Strathern, J., Hicks, J. Herskowitz, I. (1981) Control of cell type in yeast by the mating type locus. The α1-α2 hypothesis. J Mol Biol 147 : 357 372. (Pubitemid 11068642)
    • (1981) Journal of Molecular Biology , vol.147 , Issue.3 , pp. 357-372
    • Strathern, J.1    Hicks, J.2    Herskowitz, I.3
  • 47
    • 0028891623 scopus 로고
    • A homeodomain protein lacking specific side chains of helix 3 can still bind DNA and direct transcriptional repression
    • Vershon, A.K., Jin, Y. Johnson, A.D. (1995) A homeodomain protein lacking specific side chains of helix 3 can still bind DNA and direct transcriptional repression. Genes Dev 9 : 182 192.
    • (1995) Genes Dev , vol.9 , pp. 182-192
    • Vershon, A.K.1    Jin, Y.2    Johnson, A.D.3
  • 49
    • 0033580279 scopus 로고    scopus 로고
    • The yeast Cryptococcus neoformans uses 'mammalian' enhancer sites in the regulation of the virulence gene, CNLAC1
    • DOI 10.1016/S0378-1119(98)00590-3, PII S0378111998005903
    • Zhang, S., Varma, A. Williamson, P.R. (1999) The yeast Cryptococcus neoformans uses 'mammalian' enhancer sites in the regulation of the virulence gene CNLAC1. Gene 227 : 231 240. (Pubitemid 29104859)
    • (1999) Gene , vol.227 , Issue.2 , pp. 231-240
    • Zhang, S.1    Varma, A.2    Williamson, P.R.3
  • 50
    • 26844472886 scopus 로고    scopus 로고
    • Rapid identification of quox-1 homeodomain DNA-binding sequence using SAAB
    • DOI 10.1007/s10541-005-0203-3
    • Zhu, F., Liu, Z.C., Li, W.X. Xu, X.L. (2005) Rapid identification of Quox-1 homeodomain DNA-binding sequence using SAAB. Biochemistry (Mosc) 70 : 920 925. (Pubitemid 41274502)
    • (2005) Biochemistry (Moscow) , vol.70 , Issue.8 , pp. 920-925
    • Zhu, F.1    Liu, Z.-C.2    Li, W.-X.3    Xu, X.-L.4


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