Phage display screening against a set of targets to establish peptide-based sugar mimetics and molecular docking to predict binding site

Bioorganic and Medicinal Chemistry

Volumn 17, Issue 13, 2009, Pages 4825-4832

  Yu, Limin ^a   Yu, Peggy Shuang ^b   Yee Yen Mui, Elizabeth ^b   McKelvie, Jennifer C ^c   Pham, Thi Phuong Tu ^a   Yap, Yan Wen ^d   Wong, Wan Qing ^d   Wu, Jiawen ^a   Deng, Weiqiao ^a   Orner, Brendan P ^a  

^a Nanyang Technological University   (Singapore)

^b DEPARTMENT OF ELECTRONICS AND COMPUTER ENGINEERING   (Singapore)

^c UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^d NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

ConA; Docking; Glyomimetic; Peptide; Phage display

Indexed keywords

PEPTIDE LIBRARY;

ARTICLE; BINDING AFFINITY; BINDING SITE; LECTIN BINDING; MOLECULAR DOCKING; MOLECULAR MIMICRY; PHAGE DISPLAY;

AMINO ACID SEQUENCE; BINDING SITES; BIOMIMETICS; CARBOHYDRATE METABOLISM; CARBOHYDRATES; COMPUTER SIMULATION; LECTINS; LIGANDS; MODELS, MOLECULAR; PEPTIDE LIBRARY; PEPTIDES; PROTEIN BINDING;

EID: 66449102696     PISSN: 09680896     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmc.2009.03.054     Document Type: Article

References (34)

1. Cao Z.W., Han Y.L., Zheng C.J., Ji Z.L., Chen X., Lin H.H., and Chen Y.Z. Drug Discovery Today 10 (2005) 521
2. Chen S., Takanashi S., Zhang Q., Xiong W., Zhu S., Peters E.C., Ding S., and Schultz P.G. Proc. Natl. Acad. Sci. U.S.A. 104 (2007) 10482
3. Fang Y.Q., Wong W.Q., Yap Y.W., and Orner B.P. Comb. Chem. High Throughput Screening 10 (2007) 635
4. Paulsen H. Angew. Chem., Int. Ed. Engl 21 (1982) 155
5. Nicolaou K.C., and Mitchell H.J. Angew. Chem., Int. Ed. 40 (2001) 1576
6. Carmona A.T., Moreno-Vargas A.J., and Robina I. Curr. Org. Synth. 5 (2008) 33
7. Seeberger P.H., and Haase W.-C. Chem. Rev. 100 (2000) 4349
8. Seeberger P.H., and Werz D.B. Nat. Rev. Drug. Discovery 4 (2005) 751
9. Bertozzi C.R., and Kiessling L.L. Science 291 (2001) 2357
10. Monzavi B., Cunto-Amesty G., Luo P., and Kieber-Emmons T. Trends Biotechnol. 20 (2002) 207
11. Sears P., and Wong C.-H. Angew. Chem., Int. Ed. 38 (1999) 2300
12. DeMatteo M.P., Snyder N.L., Morton M., Baldisseri D.M., Hadad C.M., and Peczuh M.W. J. Org. Chem. 70 (2005) 24
13. Smith G.P., and Petrenko V.A. Chem. Rev. 97 (1997) 391
14. In: Kay B.K., Winter J., and McCafferty J. (Eds). Phage Display of Peptides and Proteins: A Laboratory Manual (1996), Academic Press, San Diego
15. In: Barbas C.F., Burton D.R., Scott J.K., and Silverman G.J. (Eds). Phage Display: A Laboratory Maual (2001), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
16. Devlin J.J., Panganiban L.C., and Devlin P.E. Science 249 (1990) 404
17. Meyer S.C., Gaj T., and Ghosh I. Chem. Biol. Drug. Des. 68 (2006) 3
18. Weber P.C., Pantoliano M.W., and Thompson L.D. Biochemistry 31 (1992) 9350
19. Scott J.K., Longanathan D., Easley R.B., Gong X.F., and Goldstein I.J. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 5398
20. Oldenburg K.R., Longanathan D., Goldstein I.J., Schultz P.G., and Gallop M.A. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 5393
21. Hoess R., Brinkmann U., Handel T., and Pastan I. Gene 128 (1993) 43
22. Shickman A.R., Greenspan N.S., and Cunningham M.W. J. Immol. 153 (1994) 5593
23. Martens C.L., Cwirla S.E., Lee R.Y.W., Whitehorn E., Chen E.Y.F., Bakker A., Martin E.L., Wagstrom C., Gopalan P., Smith C.W., Tate E., Koller K.J., Schatz P.J., Dower W.J., and Barrett R.W. J. Biol. Chem. 270 (1995) 21129
24. Kaur K.J., Khurana S., and Salunke D.M. J. Biol. Chem. 272 (1997) 5539
25. Vaughan H.A., Oldenburg K.P., Gallop M.A., Atkin J.D., McKenzie I.F.C., and Sandrin M.S. Xenotranspl 3 (1996) 18
26. Miura Y., Sakaki A., Kamihira M., Iijima S., and Kobayashi K. Biochim. Biophys. Acta 1760 (2006) 883
27. Apostolopoulos V., Sandrin M.S., and McKenzie I.F.C. J. Mol. Med. 77 (1999) 427
28. Bachle D., Loers G., Guthohrlein E.W., Schachner M., and Sewald N. Angew. Chem., Int. Ed. 45 (2006) 6582
29. Kaur K.J., Jain D., Goel M., and Salunke D.M. Vaccine 19 (2001) 3124
30. Hossany R.B., Johnson M.A., Eniade A.A., and Pinto B.M. Bioorg. Med. Chem. 12 (2004) 3743
31. Ladner R.C., Sato A.K., Gorzelany J., and de Souza M.D. Drug Discovery Today 9 (2004) 525
32. Janin D., Kaur K.J., and Salunke D.M. Biophys. J. 80 (2001) 2912
33. Jain D., Kaur K.J., Goel M., and Salunke D.M. Biochem. Biopys. Res. Commun. 272 (2000) 843
34. Naismith J.H., and Field R.A. J. Biol. Chem. 271 (1996) 972