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Volumn 25, Issue 12, 2009, Pages

Family classification without domain chaining

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; AMINO ACID SEQUENCE; CLASSIFICATION ALGORITHM; CONFERENCE PAPER; DATA ANALYSIS; GENOME ANALYSIS; HUMAN; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SIMULATION; STRUCTURAL BIOINFORMATICS; YEAST;

EID: 66349138035     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp207     Document Type: Conference Paper
Times cited : (18)

References (28)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul,S. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.1
  • 2
    • 0034777598 scopus 로고    scopus 로고
    • Clustering protein sequences - structure prediction by transitive homology
    • Bolten,E. et al. (2001) Clustering protein sequences - structure prediction by transitive homology. Bioinformatics, 17, 935-941.
    • (2001) Bioinformatics , vol.17 , pp. 935-941
    • Bolten, E.1
  • 3
    • 26844454995 scopus 로고    scopus 로고
    • Domain rearrangements in protein evolution
    • Bjorklund,A. et al. (2005) Domain rearrangements in protein evolution. J. Mol. Biol., 353, 911-923.
    • (2005) J. Mol. Biol , vol.353 , pp. 911-923
    • Bjorklund, A.1
  • 4
    • 35248817344 scopus 로고    scopus 로고
    • Optimal spaced seeds for homologous coding regions
    • Baeza- Yates R. et al, eds, Proceedings of Symposium on Combinatorial Pattern Matching CPM'03, of, Springer, Morelia, Mexico, pp
    • Brejova,B. et al. (2003) Optimal spaced seeds for homologous coding regions. In Baeza- Yates R. et al. (eds), Proceedings of Symposium on Combinatorial Pattern Matching (CPM'03), Vol. 2676 of Lecture Notes in Computer Science, Springer, Morelia, Mexico, pp. 42-54.
    • (2003) Lecture Notes in Computer Science , vol.2676 , pp. 42-54
    • Brejova, B.1
  • 5
    • 33745630672 scopus 로고    scopus 로고
    • Functional classification using phylogenomic inference
    • Brown,D. and Sjolander,K. (2006) Functional classification using phylogenomic inference. PLoS Comput. Biol., 2, 479-483.
    • (2006) PLoS Comput. Biol , vol.2 , pp. 479-483
    • Brown, D.1    Sjolander, K.2
  • 7
    • 25844471721 scopus 로고    scopus 로고
    • The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
    • Byrne,K.P. and Wolfe,K. (2005) The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res., 15, 1456-1461.
    • (2005) Genome Res , vol.15 , pp. 1456-1461
    • Byrne, K.P.1    Wolfe, K.2
  • 8
    • 41449117976 scopus 로고    scopus 로고
    • Sybil: Methods and software for multiple genome comparison and visualization
    • Crabtree,J. et al. (2007) Sybil: Methods and software for multiple genome comparison and visualization. Methods Mol. Biol., 408 93-108.
    • (2007) Methods Mol. Biol , vol.408 , pp. 93-108
    • Crabtree, J.1
  • 9
    • 41149121347 scopus 로고    scopus 로고
    • The evolution of mammalian gene families
    • Demuth,J. et al. (2006) The evolution of mammalian gene families. PLoS ONE, 1, e85.
    • (2006) PLoS ONE , vol.1
    • Demuth, J.1
  • 10
    • 0034274870 scopus 로고    scopus 로고
    • An open graph visualization system and its applications
    • Emden R. Gansner and Stephen C. North. (1999) An open graph visualization system and its applications. Software Pract. and Exper. 30, 1203-1233.
    • (1999) Software Pract. and Exper , vol.30 , pp. 1203-1233
    • Gansner, E.R.1    North, S.C.2
  • 11
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright,A. et al. (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 30, 1575-1584.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1575-1584
    • Enright, A.1
  • 12
    • 0034178257 scopus 로고    scopus 로고
    • Homology: A personal view on some of the problems
    • Fitch,W. (2000) Homology: A personal view on some of the problems. Trends Genet., 16, 227-231.
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.1
  • 13
    • 0033740039 scopus 로고    scopus 로고
    • Towards a covering set of protein family profiles
    • Heger,A. and Holm,L. (2000) Towards a covering set of protein family profiles. Prog. Biophys. Mol. Biol., 73, 321-337.
    • (2000) Prog. Biophys. Mol. Biol , vol.73 , pp. 321-337
    • Heger, A.1    Holm, L.2
  • 14
    • 40749088394 scopus 로고    scopus 로고
    • The princeton protein orthology database (P-POD): A comparative genomics analysis tool for biologists
    • Heinicke,S. et al. (2007) The princeton protein orthology database (P-POD): A comparative genomics analysis tool for biologists. PLoS ONE, 2, e766.
    • (2007) PLoS ONE , vol.2
    • Heinicke, S.1
  • 16
    • 33947406692 scopus 로고    scopus 로고
    • Bag: A graph theoretic sequence clustering algorithm
    • Kim,S. and Lee,J. (2006) Bag: A graph theoretic sequence clustering algorithm. Int. J. Data Min. Bioinform., 1.
    • (2006) Int. J. Data Min. Bioinform , vol.1
    • Kim, S.1    Lee, J.2
  • 17
    • 13244291417 scopus 로고    scopus 로고
    • Large scale hierarchical clustering of protein sequences
    • Krause,A. et al. (2005) Large scale hierarchical clustering of protein sequences. BMC Bioinformatics, 6, 15.
    • (2005) BMC Bioinformatics , vol.6 , pp. 15
    • Krause, A.1
  • 18
    • 33645523636 scopus 로고    scopus 로고
    • Spectral clustering of protein sequences
    • Paccanaro,A. et al. (2006) Spectral clustering of protein sequences. Nucleic Acids Res., 34, 1571-1580.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1571-1580
    • Paccanaro, A.1
  • 19
    • 37249000536 scopus 로고    scopus 로고
    • Exact and heuristic algorithms for weighted cluster editing
    • Rahmann,S. et al. (2007) Exact and heuristic algorithms for weighted cluster editing. Comput. Syst. Bioinformatics Conf., 6 391-401.
    • (2007) Comput. Syst. Bioinformatics Conf , vol.6 , pp. 391-401
    • Rahmann, S.1
  • 20
    • 0037250523 scopus 로고    scopus 로고
    • ProtoNet: Hierarchical classification of the protein space
    • Sasson,O. et al. (2003) ProtoNet: Hierarchical classification of the protein space. Nucleic Acids Res., 31, 348-352.
    • (2003) Nucleic Acids Res , vol.31 , pp. 348-352
    • Sasson, O.1
  • 21
    • 34250333457 scopus 로고    scopus 로고
    • Domain architecture comparison for multidomain homology identification
    • Song,N. et al. (2007) Domain architecture comparison for multidomain homology identification. J. Comput. Biol., 14, 496-516.
    • (2007) J. Comput. Biol , vol.14 , pp. 496-516
    • Song, N.1
  • 22
    • 44949207428 scopus 로고    scopus 로고
    • Song,N. et al. (2008) Sequence similarity network reveals common ancestry of multidomain proteins. PLoS. Comput. Biol., 4, e1000063.
    • Song,N. et al. (2008) Sequence similarity network reveals common ancestry of multidomain proteins. PLoS. Comput. Biol., 4, e1000063.
  • 23
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: An updated version includes eukaryotes
    • Tatusov,R. et al. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
    • (2003) BMC Bioinformatics , vol.4 , pp. 41
    • Tatusov, R.1
  • 24
    • 2342475726 scopus 로고    scopus 로고
    • Protein ranking: From local to global structure in the protein similarity network
    • Weston,J. et al. (2004) Protein ranking: From local to global structure in the protein similarity network. Proc. Natl Acad. Sci. 101, 6559-6563.
    • (2004) Proc. Natl Acad. Sci , vol.101 , pp. 6559-6563
    • Weston, J.1
  • 25
    • 38549092091 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler,D.L. et al. (2008) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 36 D13-D21.
    • (2008) Nucleic Acids Res , vol.36
    • Wheeler, D.L.1
  • 26
    • 37249051926 scopus 로고    scopus 로고
    • Large scale clustering of protein sequences with FORCE -a layout based heuristic for weighted cluster editing
    • Wittkop,T. et al. (2007) Large scale clustering of protein sequences with FORCE -a layout based heuristic for weighted cluster editing. BMC Bioinformatics, 8, 396.
    • (2007) BMC Bioinformatics , vol.8 , pp. 396
    • Wittkop, T.1
  • 27
    • 0041922344 scopus 로고    scopus 로고
    • Protein family classification and functional annotation
    • Wu,C. et al. (2003) Protein family classification and functional annotation. Comput. Biol. Chem., 27, 37-47.
    • (2003) Comput. Biol. Chem , vol.27 , pp. 37-47
    • Wu, C.1
  • 28
    • 0032169849 scopus 로고    scopus 로고
    • Protein sequence similarity searches using patterns as seeds
    • Zhang,Z. et al. (1998) Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res., 26, 3986-3990.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3986-3990
    • Zhang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.