Superoxide dismutase 3, extracellular (SOD3) variants and lung function

Physiological Genomics

Volumn 37, Issue 3, 2009, Pages 260-267

  Ganguly, Koustav ^a   Depner, Martin ^b   Fattman, Cheryl ^c   Bein, Kiflai ^c   Oury, Tim D ^d   Wesselkamper, Scott C ^e   Borchers, Michael T ^e   Schreiber, Martina ^a   Gao, Fei ^d   Von Mutius, Erika ^b   Kabesch, Michael ^f   Leikauf, George D ^c   Schulz, Holger ^a  

^a INSTITUTE OF EPIDEMIOLOGY   (Germany)

^b LUDWIG MAXIMILIANS UNIVERSITY   (Germany)

^c UNIVERSITY OF PITTSBURGH   (United States)

^d UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

^e UNIVERSITY OF CINCINNATI   (United States)

^f HANNOVER MEDICAL SCHOOL   (Germany)

Author keywords

Asthma; Chronic obstructive pulmonary disease; Complex trait; Lung development

Indexed keywords

HYDROCARBON; HYDROCARBON RECEPTOR; MESSENGER RNA; SUPEROXIDE DISMUTASE; SUPEROXIDE DISMUTASE 3; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CHILD; CONTROLLED STUDY; ENZYME ACTIVITY; EXON; FORCED EXPIRATORY VOLUME; GENETIC VARIABILITY; HUMAN; LUNG ALVEOLUS EPITHELIUM; LUNG DEVELOPMENT; LUNG FUNCTION; LUNG VENTILATION; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; RESPIRATORY EPITHELIUM; SCHOOL CHILD; SINGLE NUCLEOTIDE POLYMORPHISM; STRAIN DIFFERENCE; XENOBIOTIC METABOLISM;

ANIMALS; CELL LINE, TUMOR; CHILD; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION PROFILING; GENE FREQUENCY; GENOTYPE; HUMANS; IMMUNOHISTOCHEMISTRY; IN SITU HYBRIDIZATION; LINKAGE DISEQUILIBRIUM; LUNG; MICE; MICE, INBRED C3H; PHENOTYPE; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEIN BINDING; PULMONARY ALVEOLI; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUPEROXIDE DISMUTASE;

MUS;

EID: 66349109103     PISSN: 10948341     EISSN: 15312267     Source Type: Journal    
DOI: 10.1152/physiolgenomics.90363.2008     Document Type: Article

References (49)

1. Adachi T, Wang J, Wang XL. Age-related change of plasma extracellular- superoxide dismutase. Clin Chim Acta 290: 169-178, 2000. (Pubitemid 30001897)
2. Ahmed MN, Suliman HB, Folz RJ, Nozik-Grayck E, Golson ML, Mason SN, Auten RL. Extracellular superoxide dismutase protects lung development in hyperoxia-exposed newborn mice. Am J Respir Crit Care Med 167: 400-405, 2003. (Pubitemid 36216423)
3. Amy RW, Bowes D, Burri PH, Haines J, Thurlbeck WM. Postnatal growth of the mouse lung. J Anat 124: 131-151, 1977. (Pubitemid 8187543)
4. Auten RL, O'Reilly MA, Oury TD, Nozik-Grayck E, Whorton MH. Transgenic extracellular superoxide dismutase protects postnatal alveolar epithelial proliferation and development during hyperoxia. Am J Physiol Lung Cell Mol Physiol 290: L32-L40, 2006.
5. Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265, 2005. (Pubitemid 40202029)
6. Burrows B, Knudson RJ, Lebowitz MD. The relationship of childhood respiratory illness to adult obstructive airway disease. Am Rev Respir Dis 115: 751-760, 1977. (Pubitemid 8102621)
7. Carlsson LM, Jonsson J, Edlund T, Marklund SL. Mice lacking extracellular superoxide dismutase are more sensitive to hyperoxia. Proc Natl Acad Sci USA 92:6264-6268, 1995.
8. Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, Frisch M, Bayerlein M, Werner T. MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics 21: 2933-2942, 2005. (Pubitemid 40916416)
9. Crapo JD, McCord JM, Fridovich I. Preparation and assay of superoxide dismutases. Methods Enzymol 53: 382-393, 1978.
10. Dahl M, Bowler RP, Juul K, Crapo JD, Levy S, Nordestgaard BG. Superoxide dismutase 3 polymorphism associated with reduced lung function in two large populations. Am J Respir Crit Care Med 178: 906-912, 2008.
11. Ding C, Cantor CR. A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS. Proc Natl Acad Sci USA 100: 3059-3064, 2003. (Pubitemid 36356539)
12. Faisst S, Meyer S. Compilation of vertebrate-encoded transcription factors. Nucleic Acids Res 20: 3-26, 1992.
13. Fattman CL, Enghild JJ, Crapo JD, Schaefer LM, Valnickova Z, Oury TD. Purification and characterization of extracellular superoxide dismutase in mouse lung. Biochem Biophys Res Commun 275: 542-548, 2000.
14. Fattman CL, Schaefer LM, Oury TD. Extracellular superoxide dismutase in biology and medicine. Free Radic Biol Med 35: 236-256, 2003. (Pubitemid 37288924)
15. Fattman CL, Tan RJ, Tobolewski JM, Oury TD. Increased sensitivity to asbestos-induced lung injury in mice lacking extracellular superoxide dismutase. Free Radic Biol Med 40: 601-607, 2006. (Pubitemid 43170811)
16. Folz RJ, Crapo JD. Extracellular superoxide dismutase (SOD3): tissue-specific expression, genomic characterization, and computer-assisted sequence analysis of the human EC SOD gene. Genomics 22: 162-171, 1994. (Pubitemid 24234100)
17. Folz RJ, Guan J, Seldin MF, Oury TD, Enghild JJ, Crapo JD. Mouse extracellular superoxide dismutase: primary structure, tissue-specific gene expression, chromosomal localization, and lung in situ hybridization. Am J Respir Cell Mol Biol 17: 393-403, 1997. (Pubitemid 127500972)
18. International HapMap Consortium. A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861, 2007. (Pubitemid 47598626)
19. Ganguly K, Stoeger T, Wesselkamper SC, Reinhard C, Sartor MA, Medvedovic M, Tomlinson CR, Bolle I, Mason JM, Leifkauf GD, Schulz H. Candidate genes controlling pulmonary function in mice: transcript profiling and predicted protein structure. Physiol Genomics 31: 410-421, 2007. (Pubitemid 350127781)
20. Ghio AJ, Suliman HB, Carter JD, Abushamaa AM, Folz RJ. Overexpression of extracellular superoxide dismutase decreases lung injury after exposure to oil fly ash. Am J Physiol Lung Cell Mol Physiol 283: L211-L218, 2002. (Pubitemid 34764559)
21. Giles BL, Suliman H, Mamo LB, Piantadosi CA, Oury TD, Nozik-Grayck E. Prenatal hypoxia decreases lung extracellular superoxide dismutase expression and activity. Am J Physiol Lung Cell Mol Physiol 283: L549-L554, 2002.
22. Grimm C, Sporle R, Schmid TE, Adler ID, Adamski J, Schughart K, Graw J. Isolation and embryonic expression of the novel mouse gene Hic1, the homologue of HIC1, a candidate gene for the Miller-Dieker syndrome. Hum Mol Genet 8: 697-710, 1999. (Pubitemid 29139986)
23. Hanlon PR, Zheng W, Ko AY, Jefcoate CR. Identification of novel TCDD-regulated genes by microarray analysis. Toxicol Appl Pharmacol 202: 215-228, 2005. (Pubitemid 40164275)
24. Jain S, Maltepe E, Lu MM, Simon C, Bradfield CA. Expression of ARNT, ARNT2, HIF1 alpha, HIF2 alpha and Ah receptor mRNAs in the developing mouse. Mech Dev 73: 117-123, 1998. (Pubitemid 28218548)
25. Juul K, Tybjaerg-Hansen A, Marklund S, Lange P, Nordestgaard BG. Genetically increased antioxidative protection and decreased chronic obstructive pulmonary disease. Am J Respir Crit Care Med 173: 858-864, 2006.
26. Kransler KM, McGarrigle BP, Swartz DD, Olson JR. Lung development in the Holtzman rat is adversely affected by gestational exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Sci 107: 498-511, 2008.
27. -DeltaDeltaCT method. Methods 25: 402-408. 2001.
28. Marklund SL. Analysis of extracellular superoxide dismutase in tissue homogenates and extracellular fluids. Methods Enzymol 186: 260-265, 1990. (Pubitemid 20279965)
29. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16: 1215, 1988.
30. Nozik-Grayck E, Dieterle CS, Piantadosi CA, Enghild JJ, Oury TD. Secretion of extracellular superoxide dismutase in neonatal lungs. Am J Physiol Lung Cell Mol Physiol 279: L977-L984, 2000.
31. Oury TD, Chang LY, Marklund SL, Day BJ, Crapo JD. Immunocytochemical localization of extracellular superoxide dismutase in human lung. Lab Invest 70: 889-898, 1994. (Pubitemid 24209490)
32. Petersen SV, Valnickova Z, Oury TD, Crapo JD, Chr Nielsen N, Enghild JJ. The subunit composition of human extracellular superoxide dismutase (EC-SOD) regulates enzymatic activity. BMC Biochem 8: 19, 2007. (Pubitemid 350198366)
33. Puga A, Tomlinson CR, Xia Y. Ah receptor signals cross-talk with multiple developmental pathways. Biochem Pharmacol 69: 199-207, 2005. (Pubitemid 41556566)
34. Reinhard C, Meyer B, Fuchs H, Stoeger T, Eder G, Ruschendorf F, Heyder J, Nurnberg P, de Angelis MH, Schulz H. Genomewide linkage analysis identifies novel genetic loci for lung function in mice. Am J Respir Crit Care Med 171: 880-888, 2005. (Pubitemid 40562719)
35. Samet JM, Tager IB, Speizer FE. The relationship between respiratory illness in childhood and chronic air-flow obstruction in adulthood. Am Rev Respir Dis 127: 508-523, 1983.
36. Schug J. Unit 2.6. Using TESS to predict transcription factor binding sites in DNA sequence. Curr Protoc Bioinformatics. 2.6.1-2.6.15, 2008.
37. Stern DA, Morgan WJ, Wright AL, Guerra S, Martinez FD. Poor airway function in early infancy and lung function by age 22 years: a non-selective longitudinal cohort study. Lancet 370: 758-764, 2007. (Pubitemid 47320800)
38. Su WY, Folz R, Chen JS, Crapo JD, Chang LY. Extracellular superoxide dismutase mRNA expressions in the human lung by in situ hybridization. Am J Respir Cell Mol Biol 16: 162-170, 1997. (Pubitemid 127498237)
39. Suliman HB, Ali M, Piantadosi CA. Superoxide dismutase-3 promotes full expression of the EPO response to hypoxia. Blood 104: 43-50, 2004. (Pubitemid 38879836)
40. Tan RJ, Fattman CL, Watkins SC, Oury TD. Redistribution of pulmonary EC-SOD after exposure to asbestos. J Appl Physiol 97: 2006-2013, 2004.
41. Wan H, Luo F, Wert SE, Zhang L, Xu Y, Ikegami M, Maeda Y, Bell SM, Whitsett JA. Kruppel-like factor 5 is required for perinatal lung morphogenesis and function. Development 135: 2563-2572, 2008.
42. Wani MA, Wert SE, Lingrel JB. Lung Kruppel-like factor, a zinc finger transcription factor, is essential for normal lung development. J Biol Chem 274: 21180-21185, 1999. (Pubitemid 129519625)
43. Weiland SK, von Mutius E, Hirsch T, Duhme H, Fritzsch C, Werner B, Hüsing A, Stender M, Renz H, Leupold W, Keil U. Prevalence of respiratory and atopic disorders among children in the East and West of Germany five years after unification. Eur Respir J 14: 862-870, 1999. (Pubitemid 29519350)
44. Wilk JB, Walter RE, Laramie JM, Gottlieb DJ, O'Connor GT. Framingham Heart Study genome-wide association: results for pulmonary function measures. BMC Med Genet 8, Suppl 1: S8, 2007.
45. Young RP, Hopkins R, Black PN, Eddy C, Wu L, Gamble GD, Mills GD, Garrett JE, Eaton TE, Rees MI. Functional variants of antioxidant genes in smokers with COPD and in those with normal lung function. Thorax 61: 394-399, 2006. (Pubitemid 43723321)
46. Zelko IN, Folz RJ. Myeloid zinc finger (MZF)-like, Kruppel-like and Ets families of transcription factors determine the cell-specific expression of mouse extracellular superoxide dismutase. Biochem J 369: 375-386, 2003. (Pubitemid 36174208)
47. Zelko IN, Mueller MR, Folz RJ. Transcription factors sp1 and sp3 regulate expression of human extracellular superoxide dismutase in lung fibroblasts. Am J Respir Cell Mol Biol 39: 243-251, 2008.
48. Zeltner TB, Caduff JH, Gehr P, Pfenninger J, Burri PH. The postnatal development and growth of the human lung. I. Morphometry. Respir Physiol 67: 247-267, 1987. (Pubitemid 17040316)
49. Zhang L, Cui X, Schmitt K, Hubert R, Navidi W, Arnheim N. Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci USA 89: 5847-5851, 1992.