-
2
-
-
0030818634
-
Efficient priming of PCR with short oligonucleotides conjugated to a minor groove binder
-
DOI 10.1093/nar/25.13.2657
-
Afonina, I., M. Zivarts, I. Kutyavin, E. Lukhtanov, H. Gamper, and R. B. Meyer. 1997. Efficient priming of PCR with short oligonucleotides conjugated to a minor groove binder. Nucleic Acids Res. 25:2657-2660. (Pubitemid 27298163)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.13
, pp. 2657-2660
-
-
Afonina, I.1
Zivarts, M.2
Kutyavin, I.3
Lukhtanov, E.4
Gamper, H.5
Meyer, R.B.6
-
3
-
-
33845683068
-
Metabolically active microbial communities in uranium-contaminated subsurface sediments
-
Akob, D. M., H. J. Mills, and J. E. Kostka. 2007. Metabolically active microbial communities in uranium-contaminated subsurface sediments. FEMS Microbiol. Ecol. 59:95-107.
-
(2007)
FEMS Microbiol. Ecol.
, vol.59
, pp. 95-107
-
-
Akob, D.M.1
Mills, H.J.2
Kostka, J.E.3
-
4
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
5
-
-
35948948302
-
Detection and quantification of Geobacter lovleyi strain SZ: Implications for bioremediation at tetrachloroethene- And uranium-impacted sites
-
Amos, B. K., Y. Sung, K. E. Fletcher, T. J. Gentry, W. M. Wu, C. S. Criddle, J. Zhou, and F. E. Löffler. 2007. Detection and quantification of Geobacter lovleyi strain SZ: implications for bioremediation at tetrachloroethene- and uranium-impacted sites. Appl. Environ. Microbiol. 73:6898-6904.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6898-6904
-
-
Amos, B.K.1
Sung, Y.2
Fletcher, K.E.3
Gentry, T.J.4
Wu, W.M.5
Criddle, C.S.6
Zhou, J.7
Löffler, F.E.8
-
7
-
-
45749109478
-
Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels
-
Cardenas, E., W. M. Wu, M. B. Leigh, J. Carley, L. S. Carrol, T. Gentry, J. Luo, D. Watson, B. Gu, M. Ginder-Vogel, P. K. Kitanidis, P. M. Jardine, J. Zhou, C. S. Criddle, T. L. Marsh, and J. M. Tiedje. 2008. Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels. Appl. Environ. Microbiol. 74:3718-3729.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 3718-3729
-
-
Cardenas, E.1
Wu, W.M.2
Leigh, M.B.3
Carley, J.4
Carrol, L.S.5
Gentry, T.6
Luo, J.7
Watson, D.8
Gu, B.9
Ginder-Vogel, M.10
Kitanidis, P.K.11
Jardine, P.M.12
Zhou, J.13
Criddle, C.S.14
Marsh, T.L.15
Tiedje, J.M.16
-
8
-
-
3843094830
-
Diversity and composition of tropical soil nitrifiers across a plant diversity gradient and among land-use types
-
Carney, K. M., P. A. Matson, and B. J. M. Bohannan. 2004. Diversity and composition of tropical soil nitrifiers across a plant diversity gradient and among land-use types. Ecol. Lett. 7:684-694.
-
(2004)
Ecol. Lett.
, vol.7
, pp. 684-694
-
-
Carney, K.M.1
Matson, P.A.2
Bohannan, B.J.M.3
-
9
-
-
34147182303
-
A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria
-
DOI 10.1016/j.mimet.2007.02.005, PII S0167701207000565
-
Chakravorty, S., D. Helb, M. Burday, N. Connell, and D. Alland. 2007. A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J. Microbiol. Methods 69:330-339. (Pubitemid 46566457)
-
(2007)
Journal of Microbiological Methods
, vol.69
, Issue.2
, pp. 330-339
-
-
Chakravorty, S.1
Helb, D.2
Burday, M.3
Connell, N.4
Alland, D.5
-
10
-
-
0034467820
-
Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
-
Cho, J. C., and J. M. Tiedje. 2000. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl. Environ. Microbiol. 66: 5448-5456.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5448-5456
-
-
Cho, J.C.1
Tiedje, J.M.2
-
11
-
-
0028067309
-
Isolation and characterization of a novel bacterium growing via reductive dehalogenation of 2-chlorophenol
-
Cole, J. R., A. L. Cascarelli, W. W. Mohn, and J. M. Tiedje. 1994. Isolation and characterization of a novel bacterium growing via reductive dehalogenation of 2-chlorophenol. Appl. Environ. Microbiol. 60:3536-3542.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3536-3542
-
-
Cole, J.R.1
Cascarelli, A.L.2
Mohn, W.W.3
Tiedje, J.M.4
-
12
-
-
0037251969
-
The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
DOI 10.1093/nar/gkg039
-
Cole, J. R., B. Chai, T. L. Marsh, R. J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, T. M. Schmidt, G. M. Garrity, and J. M. Tiedje. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31:442-443. (Pubitemid 36150424)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 442-443
-
-
Cole, J.R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
Chandra, S.7
McGarrell, D.M.8
Schmidt, T.M.9
Garrity, G.M.10
Tiedje, J.M.11
-
13
-
-
0001901088
-
Fracture characterization in the unsaturated zone of a shallow land burial facility
-
D. D. Evans and T. J. Nicholson (ed.), American Geophysical Union, Washington, DC
-
Dreier, R. B., D. K. Solomon, and C. M. Beaudoin. 1987. Fracture characterization in the unsaturated zone of a shallow land burial facility, p. 51-59. In D. D. Evans and T. J. Nicholson (ed.), Flow and transport through unsaturated rock, vol.42. American Geophysical Union, Washington, DC.
-
(1987)
Flow and Transport Through Unsaturated Rock
, vol.42
, pp. 51-59
-
-
Dreier, R.B.1
Solomon, D.K.2
Beaudoin, C.M.3
-
14
-
-
34848828962
-
On species descriptions based on a single strain: Proposal to introduce the status species proponenda (sp. pr.)
-
Felis, G. E., and F. Dellaglio. 2007. On species descriptions based on a single strain: proposal to introduce the status species proponenda (sp. pr.). Int. J. Syst. Evol. Microbiol. 57:2185-2187.
-
(2007)
Int. J. Syst. Evol. Microbiol.
, vol.57
, pp. 2185-2187
-
-
Felis, G.E.1
Dellaglio, F.2
-
15
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
16
-
-
33747174849
-
Spatial scaling of microbial biodiversity
-
Green, J., and B. J. M. Bohannan. 2006. Spatial scaling of microbial biodiversity. Trends Ecol. Evol. 21:501-507.
-
(2006)
Trends Ecol. Evol.
, vol.21
, pp. 501-507
-
-
Green, J.1
Bohannan, B.J.M.2
-
17
-
-
0037317620
-
Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species
-
DOI 10.1128/AEM.69.2.996-1003.2003
-
He, J. Z., K. M. Ritalahti, M. R. Aiello, and F. E. Löffler. 2003. Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species. Appl. Environ. Microbiol. 69:996-1003. (Pubitemid 36204828)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.2
, pp. 996-1003
-
-
He, J.1
Ritalahti, K.M.2
Aiello, M.R.3
Loffler, F.E.4
-
18
-
-
0037545523
-
Characterization of Fe(III) reduction by chlororespiring Anaeromyxobacter dehalogenans
-
He, Q., and R. A. Sanford. 2003. Characterization of Fe(III) reduction by chlororespiring Anaeromyxobacter dehalogenans. Appl. Environ. Microbiol. 69:2712-2718.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2712-2718
-
-
He, Q.1
Sanford, R.A.2
-
19
-
-
0345743471
-
In situ bioreduction of technetium and uranium in a nitrate-contaminated aquifer
-
Istok, J. D., J. M. Senko, L. R. Krumholz, D. Watson, M. A. Bogle, A. Peacock, Y. J. Chang, and D. C. White. 2004. In situ bioreduction of technetium and uranium in a nitrate-contaminated aquifer. Environ. Sci. Technol. 38:468-475.
-
(2004)
Environ. Sci. Technol.
, vol.38
, pp. 468-475
-
-
Istok, J.D.1
Senko, J.M.2
Krumholz, L.R.3
Watson, D.4
Bogle, M.A.5
Peacock, A.6
Chang, Y.J.7
White, D.C.8
-
20
-
-
0036200048
-
Influence of hydrological and geochemical processes on the transport of chelated-metals and chromate in fractured shale bedrock
-
Jardine, P. M., T. L. Mehlhorn, I. L. Larsen, W. B. Bailey, S. C. Brooks, Y. Roh, and J. P. Gwo. 2002. Influence of hydrological and geochemical processes on the transport of chelated-metals and chromate in fractured shale bedrock. J. Contam. Hydrol. 55:137-159.
-
(2002)
J. Contam. Hydrol.
, vol.55
, pp. 137-159
-
-
Jardine, P.M.1
Mehlhorn, T.L.2
Larsen, I.L.3
Bailey, W.B.4
Brooks, S.C.5
Roh, Y.6
Gwo, J.P.7
-
21
-
-
0033029378
-
Quantifying diffusive mass transfer in fractured shale bedrock
-
Jardine, P. M., W. E. Sanford, J. P. Gwo, O. C. Reedy, D. S. Hicks, R. J. Riggs, and W. B. Bailey. 1999. Quantifying diffusive mass transfer in fractured shale bedrock. Water Resour. Res. 35:2015-2030.
-
(1999)
Water Resour. Res.
, vol.35
, pp. 2015-2030
-
-
Jardine, P.M.1
Sanford, W.E.2
Gwo, J.P.3
Reedy, O.C.4
Hicks, D.S.5
Riggs, R.J.6
Bailey, W.B.7
-
22
-
-
34250648133
-
Bioaugmentation and coexistence of two functionally similar bacterial strains in aerobic granules
-
Jiang, H. L., A. M. Maszenan, and J. H. Tay. 2007. Bioaugmentation and coexistence of two functionally similar bacterial strains in aerobic granules. Appl. Microbiol. Biotechnol. 75:1191-1200.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.75
, pp. 1191-1200
-
-
Jiang, H.L.1
Maszenan, A.M.2
Tay, J.H.3
-
23
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis, K. T., and J. M. Tiedje. 2005. Genomic insights that advance the species definition for prokaryotes. Proc. Natl. Acad. Sci. USA 102:2567-2572.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
24
-
-
24944587193
-
Towards a genome-based taxonomy for prokaryotes
-
DOI 10.1128/JB.187.18.6258-6264.2005
-
Konstantinidis, K. T., and J. M. Tiedje. 2005. Towards a genome-based taxonomy for prokaryotes. J. Bacteriol. 187:6258-6264. (Pubitemid 41318383)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.18
, pp. 6258-6264
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
25
-
-
35148830364
-
A multiplex PCR for species- And virulence-specific determination of Listeria monocytogenes
-
Liu, D., M. L. Lawrence, F. W. Austin, and A. J. Ainsworth. 2007. A multiplex PCR for species- and virulence-specific determination of Listeria monocytogenes. J. Microbiol. Methods 71:133-140.
-
(2007)
J. Microbiol. Methods
, vol.71
, pp. 133-140
-
-
Liu, D.1
Lawrence, M.L.2
Austin, F.W.3
Ainsworth, A.J.4
-
26
-
-
0029781901
-
Initial characterization of a reductive dehalogenase from Desulfitobacterium chlororespirans Co23
-
Löffler, F. E., R. A. Sanford, and J. M. Tiedje. 1996. Initial characterization of a reductive dehalogenase from Desulfitobacterium chlororespirans Co23. Appl. Environ. Microbiol. 62:3809-3813.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3809-3813
-
-
Löffler, F.E.1
Sanford, R.A.2
Tiedje, J.M.3
-
27
-
-
29844441213
-
A parametric transfer function methodology for analyzing reactive transport in nonuniform flow
-
Luo, J., O. A. Cirpka, M. N. Fienen, W. M. Wu, T. L. Mehlhorn, J. Carley, P. M. Jardine, C. S. Criddle, and P. K. Kitanidis. 2006. A parametric transfer function methodology for analyzing reactive transport in nonuniform flow. J. Contam. Hydrol. 83:27-41.
-
(2006)
J. Contam. Hydrol.
, vol.83
, pp. 27-41
-
-
Luo, J.1
Cirpka, O.A.2
Fienen, M.N.3
Wu, W.M.4
Mehlhorn, T.L.5
Carley, J.6
Jardine, P.M.7
Criddle, C.S.8
Kitanidis, P.K.9
-
28
-
-
34248340994
-
Modeling in situ uranium(VI) bioreduction by sulfate-reducing bacteria
-
Luo, J., F.-A. Weber, O. A. Cirpka, W.-M. Wu, J. L. Nyman, J. Carley, P. M. Jardine, C. S. Criddle, and P. K. Kitanidis. 2007. Modeling in situ uranium(VI) bioreduction by sulfate-reducing bacteria. J. Contam. Hydrol. 92: 129-148.
-
(2007)
J. Contam. Hydrol.
, vol.92
, pp. 129-148
-
-
Luo, J.1
Weber, F.-A.2
Cirpka, O.A.3
Wu, W.-M.4
Nyman, J.L.5
Carley, J.6
Jardine, P.M.7
Criddle, C.S.8
Kitanidis, P.K.9
-
29
-
-
1642318064
-
Real-time PCR in the microbiology laboratory
-
Mackay, I. M. 2004. Real-time PCR in the microbiology laboratory. Clin. Microbiol. Infect. 10:190-212.
-
(2004)
Clin. Microbiol. Infect.
, vol.10
, pp. 190-212
-
-
Mackay, I.M.1
-
30
-
-
58549086166
-
Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C
-
Marshall, M. J., A. C. Dohnalkova, D. W. Kennedy, A. E. Plymale, S. H. Thomas, F. E. Löffler, R. A. Sanford, J. M. Zachara, J. K. Fredrickson, and A. S. Beliaev. 2008. Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C. Environ. Microbiol. 11:534-543.
-
(2008)
Environ. Microbiol.
, vol.11
, pp. 534-543
-
-
Marshall, M.J.1
Dohnalkova, A.C.2
Kennedy, D.W.3
Plymale, A.E.4
Thomas, S.H.5
Löffler, F.E.6
Sanford, R.A.7
Zachara, J.M.8
Fredrickson, J.K.9
Beliaev, A.S.10
-
31
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny, J. B. H., B. J. M. Bohannan, J. H. Brown, R. K. Colwell, J. A. Fuhrman, J. L. Green, M. C. Horner-Devine, M. Kane, J. A. Krumins, C. R. Kuske, P. J. Morin, S. Naeem, L. Ovreas, A.-L. Reysenbach, V. H. Smith, and J. T. Staley. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4:102-112.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Ovreas, L.13
Reysenbach, A.-L.14
Smith, V.H.15
Staley, J.T.16
-
32
-
-
4143121402
-
Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate
-
North, N. N., S. L. Dollhopf, L. Petrie, J. D. Istok, D. L. Balkwill, and J. E. Kostka. 2004. Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate. Appl. Environ. Microbiol. 70:4911-4920.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 4911-4920
-
-
North, N.N.1
Dollhopf, S.L.2
Petrie, L.3
Istok, J.D.4
Balkwill, D.L.5
Kostka, J.E.6
-
33
-
-
2142853093
-
Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI)
-
Petrie, L., N. N. North, S. L. Dollhopf, D. L. Balkwill, and J. E. Kostka. 2003. Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI). Appl. Environ. Microbiol. 69:7467-7479.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7467-7479
-
-
Petrie, L.1
North, N.N.2
Dollhopf, S.L.3
Balkwill, D.L.4
Kostka, J.E.5
-
34
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M. W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:2002-2007.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2002-2007
-
-
Pfaffl, M.W.1
-
35
-
-
33749412966
-
Distribution of uranium contamination in weathered fractured saprolite/shale and ground water
-
Phillips, D. H., D. B. Watson, Y. Roh, T. L. Mehlhorn, J. W. Moon, and P. M. Jardine. 2006. Distribution of uranium contamination in weathered fractured saprolite/shale and ground water. J. Environ. Qual. 35:1715-1730.
-
(2006)
J. Environ. Qual.
, vol.35
, pp. 1715-1730
-
-
Phillips, D.H.1
Watson, D.B.2
Roh, Y.3
Mehlhorn, T.L.4
Moon, J.W.5
Jardine, P.M.6
-
36
-
-
15444377106
-
Species abundance and diversity of Burkholderia cepacia complex in the environment
-
Ramette, A., J. J. LiPuma, and J. M. Tiedje. 2005. Species abundance and diversity of Burkholderia cepacia complex in the environment. Appl. Environ. Microbiol. 71:1193-1201.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 1193-1201
-
-
Ramette, A.1
LiPuma, J.J.2
Tiedje, J.M.3
-
37
-
-
33847327474
-
Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution
-
Ramette, A., and J. M. Tiedje. 2007. Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution. Microb. Ecol. 53:197-207.
-
(2007)
Microb. Ecol.
, vol.53
, pp. 197-207
-
-
Ramette, A.1
Tiedje, J.M.2
-
38
-
-
33646099161
-
Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains
-
Ritalahti, K. M., B. K. Amos, Y. Sung, Q. Z. Wu, S. S. Koenigsberg, and F. E. Löffler. 2006. Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains. Appl. Environ. Microbiol. 72:2765-2774.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 2765-2774
-
-
Ritalahti, K.M.1
Amos, B.K.2
Sung, Y.3
Wu, Q.Z.4
Koenigsberg, S.S.5
Löffler, F.E.6
-
39
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
40
-
-
0036154232
-
Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl halorespiring facultative anaerobic myxobacterium
-
Sanford, R. A., J. R. Cole, and J. M. Tiedje. 2002. Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl halorespiring facultative anaerobic myxobacterium. Appl. Environ. Microbiol. 68:893-900.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 893-900
-
-
Sanford, R.A.1
Cole, J.R.2
Tiedje, J.M.3
-
41
-
-
35148851430
-
Hexavalent uranium supports growth of Anaeromyxobacter dehalogenans and Geobacter spp. with lower than predicted biomass yields
-
Sanford, R. A., Q. Wu, Y. Sung, S. H. Thomas, B. K. Amos, E. K. Prince, and F. E. Löffler. 2007. Hexavalent uranium supports growth of Anaeromyxobacter dehalogenans and Geobacter spp. with lower than predicted biomass yields. Environ. Microbiol. 9:2885-2893.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 2885-2893
-
-
Sanford, R.A.1
Wu, Q.2
Sung, Y.3
Thomas, S.H.4
Amos, B.K.5
Prince, E.K.6
Löffler, F.E.7
-
42
-
-
36649034891
-
Multiplex assay based on single-nucleotide polymorphisms for rapid identification of Brucella isolates at the species level
-
Scott, J. C., M. S. Koylass, M. R. Stubberfield, and A. M. Whatmore. 2007. Multiplex assay based on single-nucleotide polymorphisms for rapid identification of Brucella isolates at the species level. Appl. Environ. Microbiol. 73:7331-7337.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 7331-7337
-
-
Scott, J.C.1
Koylass, M.S.2
Stubberfield, M.R.3
Whatmore, A.M.4
-
43
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
44
-
-
3342920601
-
Prospects for inferring very large phylogenies by using the neighbor-joining method
-
Tamura, K., M. Nei, and S. Kumar. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. USA 101:11030-11035.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11030-11035
-
-
Tamura, K.1
Nei, M.2
Kumar, S.3
-
45
-
-
47749126600
-
The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria
-
Thomas, S. H., R. D. Wagner, A. K. Arakaki, J. Skolnick, J. R. Kirby, L. J. Shimkets, R. A. Sanford, and F. E. Löffler. 2008. The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria. PLoS ONE 3:e2103.
-
(2008)
PLoS ONE
, vol.3
-
-
Thomas, S.H.1
Wagner, R.D.2
Arakaki, A.K.3
Skolnick, J.4
Kirby, J.R.5
Shimkets, L.J.6
Sanford, R.A.7
Löffler, F.E.8
-
46
-
-
0037447854
-
Strain FAc12, a dissimilatory iron-reducing member of the Anaeromyxobacter subgroup of Myxococcales
-
DOI 10.1016/S0168-6496(03)00048-5
-
Treude, N., D. Rosencrantz, W. Liesack, and S. Schnell. 2003. Strain FAc12, a dissimilatory iron-reducing member of the Anaeromyxobacter subgroup of Myxococcales. FEMS Microbiol. Ecol. 44:261-269. (Pubitemid 36423421)
-
(2003)
FEMS Microbiology Ecology
, vol.44
, Issue.2
, pp. 261-269
-
-
Treude, N.1
Rosencrantz, D.2
Liesack, W.3
Schnell, S.4
-
47
-
-
0037271271
-
A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil
-
Treves, D. S., B. Xia, J. Zhou, and J. M. Tiedje. 2003. A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil. Microb. Ecol. 45:20-28.
-
(2003)
Microb. Ecol.
, vol.45
, pp. 20-28
-
-
Treves, D.S.1
Xia, B.2
Zhou, J.3
Tiedje, J.M.4
-
48
-
-
2642521177
-
Molecular beacons for multiplex detection of four bacterial bioterrorism agents
-
Varma-Basil, M., H. El-Hajj, S. A. E. Marras, M. H. Hazbon, J. M. Mann, N. D. Connell, F. R. Kramer, and D. Alland. 2004. Molecular beacons for multiplex detection of four bacterial bioterrorism agents. Clin. Chem. 50: 1060-1063.
-
(2004)
Clin. Chem.
, vol.50
, pp. 1060-1063
-
-
Varma-Basil, M.1
El-Hajj, H.2
Marras, S.A.E.3
Hazbon, M.H.4
Mann, J.M.5
Connell, N.D.6
Kramer, F.R.7
Alland, D.8
-
49
-
-
33845764922
-
-
U.S. Department of Energy, Oak Ridge, TN
-
Watson, D. B., J. E. Kostka, M. W. Fields, and P. M. Jardine. 2004. The Oak Ridge Field Research Center conceptual model. U.S. Department of Energy, Oak Ridge, TN. http://www.esd.ornl.gov/orifrc/.
-
(2004)
The Oak Ridge Field Research Center Conceptual Model
-
-
Watson, D.B.1
Kostka, J.E.2
Fields, M.W.3
Jardine, P.M.4
-
50
-
-
33646541966
-
Uranium(VI) reduction by Anaeromyxobacter dehalogenans strain 2CP-C
-
Wu, Q., R. A. Sanford, and F. E. Löffler. 2006. Uranium(VI) reduction by Anaeromyxobacter dehalogenans strain 2CP-C. Appl. Environ. Microbiol. 72: 3608-3614.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3608-3614
-
-
Wu, Q.1
Sanford, R.A.2
Löffler, F.E.3
-
51
-
-
33745139487
-
Pilot-scale in situ bioremediation of uranium in a highly contaminated aquifer. 1. Conditioning of a treatment zone
-
Wu, W.-M., J. Carley, M. Fienen, T. Mehlhorn, K. Lowe, J. Nyman, J. Luo, M. E. Gentile, R. Rajan, D. Wagner, R. F. Hickey, B. H. Gu, D. Watson, O. A. Cirpka, P. K. Kitanidis, P. M. Jardine, and C. S. Criddle. 2006. Pilot-scale in situ bioremediation of uranium in a highly contaminated aquifer. 1. Conditioning of a treatment zone. Environ. Sci. Technol. 40:3978-3985.
-
(2006)
Environ. Sci. Technol.
, vol.40
, pp. 3978-3985
-
-
Wu, W.-M.1
Carley, J.2
Fienen, M.3
Mehlhorn, T.4
Lowe, K.5
Nyman, J.6
Luo, J.7
Gentile, M.E.8
Rajan, R.9
Wagner, D.10
Hickey, R.F.11
Gu, B.H.12
Watson, D.13
Cirpka, O.A.14
Kitanidis, P.K.15
Jardine, P.M.16
Criddle, C.S.17
-
52
-
-
34548092119
-
In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen
-
Wu, W.-M., J. Carley, J. Luo, M. A. Ginder-Vogel, E. Cardenas, M. B. Leigh, C. A. C. Hwang, S. D. Kelly, C. M. Ruan, L. Wu, J. V. Nostrand, T. Gentry, K. Lowe, T. Mehlhorn, S. Carroll, W. Luo, M. W. Fields, B. H. Gu, D. Watson, K. M. Kemner, T. Marsh, J. Tiedje, J. Zhou, S. Fendorf, P. K. Kitanidis, P. M. Jardine, and C. S. Criddle. 2007. In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen. Environ. Sci. Technol. 41:5716-5723.
-
(2007)
Environ. Sci. Technol.
, vol.41
, pp. 5716-5723
-
-
Wu, W.-M.1
Carley, J.2
Luo, J.3
Ginder-Vogel, M.A.4
Cardenas, E.5
Leigh, M.B.6
Hwang, C.A.C.7
Kelly, S.D.8
Ruan, C.M.9
Wu, L.10
Nostrand, J.V.11
Gentry, T.12
Lowe, K.13
Mehlhorn, T.14
Carroll, S.15
Luo, W.16
Fields, M.W.17
Gu, B.H.18
Watson, D.19
Kemner, K.M.20
Marsh, T.21
Tiedje, J.22
Zhou, J.23
Fendorf, S.24
Kitanidis, P.K.25
Jardine, P.M.26
Criddle, C.S.27
more..
-
53
-
-
33745151074
-
Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of U(VI) and geochemical control of U(VI) bioavailability
-
Wu, W.-M., J. Carley, T. Gentry, M. A. Ginder-Vogel, M. Fienen, T. Mehlhorn, H. Yan, S. Caroll, M. N. Pace, J. Nyman, J. Luo, M. E. Gentile, M. W. Fields, R. F. Hickey, B. H. Gu, D. Watson, O. A. Cirpka, J. Z. Zhou, S. Fendorf, P. K. Kitanidis, P. M. Jardine, and C. S. Criddle. 2006. Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of U(VI) and geochemical control of U(VI) bioavailability. Environ. Sci. Technol. 40:3986-3995.
-
(2006)
Environ. Sci. Technol.
, vol.40
, pp. 3986-3995
-
-
Wu, W.-M.1
Carley, J.2
Gentry, T.3
Ginder-Vogel, M.A.4
Fienen, M.5
Mehlhorn, T.6
Yan, H.7
Caroll, S.8
Pace, M.N.9
Nyman, J.10
Luo, J.11
Gentile, M.E.12
Fields, M.W.13
Hickey, R.F.14
Gu, B.H.15
Watson, D.16
Cirpka, O.A.17
Zhou, J.Z.18
Fendorf, S.19
Kitanidis, P.K.20
Jardine, P.M.21
Criddle, C.S.22
more..
-
54
-
-
0031436948
-
Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
-
Zhou, J., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil. Microbiology (United Kingdom) 143:3913-3919. (Pubitemid 28004624)
-
(1997)
Microbiology
, vol.143
, Issue.12
, pp. 3913-3919
-
-
Zhou, J.1
Davey, M.E.2
Figueras, J.B.3
Rivkina, E.4
Gilichinsky, D.5
Tiedje, J.M.6
-
55
-
-
1642342085
-
Microbial diversity and heterogeneity in sandy subsurface soils
-
Zhou, J. Z., B. C. Xia, H. Huang, A. V. Palumbo, and J. M. Tiedje. 2004. Microbial diversity and heterogeneity in sandy subsurface soils. Appl. Environ. Microbiol. 70:1723-1734.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1723-1734
-
-
Zhou, J.Z.1
Xia, B.C.2
Huang, H.3
Palumbo, A.V.4
Tiedje, J.M.5
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