-
2
-
-
0345513276
-
The differentiation of the A-type esterases in sheep serum
-
Main AR. The differentiation of the A-type esterases in sheep serum. Biochem J 1960;75:188-195.
-
(1960)
Biochem J
, vol.75
, pp. 188-195
-
-
Main, A.R.1
-
3
-
-
33947693913
-
Stoichiometric and catalytic scavengers as protection against nerve agent toxicity: A mini review
-
Lenz DE, Yeung D, Smith JR, Sweeney RE, Lumley LA, Cerasoli DM. Stoichiometric and catalytic scavengers as protection against nerve agent toxicity: a mini review. Toxicology 2007;233:31-39.
-
(2007)
Toxicology
, vol.233
, pp. 31-39
-
-
Lenz, D.E.1
Yeung, D.2
Smith, J.R.3
Sweeney, R.E.4
Lumley, L.A.5
Cerasoli, D.M.6
-
4
-
-
34250882686
-
Stability of highly purified human paraoxonase (PON1): Association with human phosphate binding protein (HPBP) is essential for preserving its active conformation(s)
-
Rochu D, Renault F, Clery-Barraud C, Chabriere E, Masson P. Stability of highly purified human paraoxonase (PON1): association with human phosphate binding protein (HPBP) is essential for preserving its active conformation(s). Biochim Biophys Acta 2007; 1774:874-883.
-
(2007)
Biochim Biophys Acta
, vol.1774
, pp. 874-883
-
-
Rochu, D.1
Renault, F.2
Clery-Barraud, C.3
Chabriere, E.4
Masson, P.5
-
5
-
-
0032877947
-
Human serum paraoxonase/arylesterase's retained hydrophobic N-terminal leader sequence associates with HDLs by binding phos-pholipids: Apolipoprotein A-I stabilizes activity
-
Sorenson RC, Bisgaier CL, Aviram M, Hsu C, Billecke S, La Du BN. Human serum paraoxonase/arylesterase's retained hydrophobic N-terminal leader sequence associates with HDLs by binding phos-pholipids: apolipoprotein A-I stabilizes activity. Arterioscler Thromb Vasc Biol 1999;19:2214-2225.
-
(1999)
Arterioscler Thromb Vasc Biol
, vol.19
, pp. 2214-2225
-
-
Sorenson, R.C.1
Bisgaier, C.L.2
Aviram, M.3
Hsu, C.4
Billecke, S.5
La Du, B.N.6
-
6
-
-
0033002909
-
On the physiological role(s) of the paraoxo-nases
-
La Du BN, Aviram M, Billecke S, Navab M, Primo-Parmo S, Sorenson RC, Standiford TJ. On the physiological role(s) of the paraoxo-nases. Chem Biol Interact 1999;119-120:379-388.
-
(1999)
Chem Biol Interact
-
-
La Du, B.N.1
Aviram, M.2
Billecke, S.3
Navab, M.4
Primo-Parmo, S.5
Sorenson, R.C.6
Standiford, T.J.7
-
7
-
-
0036123993
-
Oxidative stress increases the expression of the CD36 scavenger receptor and the cellular uptake of oxidized low-density lipoprotein in macrophages from atherosclerotic mice: Protective role of antioxidants and of paraoxonase
-
Fuhrman B, Volkova N, Aviram M. Oxidative stress increases the expression of the CD36 scavenger receptor and the cellular uptake of oxidized low-density lipoprotein in macrophages from atherosclerotic mice: protective role of antioxidants and of paraoxonase. Atherosclerosis 2002;161:307-316.
-
(2002)
Atherosclerosis
, vol.161
, pp. 307-316
-
-
Fuhrman, B.1
Volkova, N.2
Aviram, M.3
-
8
-
-
21244491480
-
Human paraoxonases (PON1, PON2, and PON3) are lacto-nases with overlapping and distinct substrate specificities
-
Draganov DI, Teiber JF, Speelman A, Osawa Y, Sunahara R, La Du BN. Human paraoxonases (PON1, PON2, and PON3) are lacto-nases with overlapping and distinct substrate specificities. J Lipid Res 2005;46:1239-1247.
-
(2005)
J Lipid Res
, vol.46
, pp. 1239-1247
-
-
Draganov, D.I.1
Teiber, J.F.2
Speelman, A.3
Osawa, Y.4
Sunahara, R.5
La Du, B.N.6
-
9
-
-
17644367506
-
Structure-reactivity studies of serum par-aoxonase PON1 suggest that its native activity is lactonase
-
Khersonsky O, Tawfik DS. Structure-reactivity studies of serum par-aoxonase PON1 suggest that its native activity is lactonase. Biochemistry 2005;44:6371-6382.
-
(2005)
Biochemistry
, vol.44
, pp. 6371-6382
-
-
Khersonsky, O.1
Tawfik, D.S.2
-
10
-
-
11244281311
-
The 'evolvabilit/ of promiscuous protein functions
-
Aharoni A, Gaidukov L, Khersonsky O, Mc QGS, Roodveldt C, Tawfik DS. The 'evolvabilit/ of promiscuous protein functions. Nat Genet 2005;37:73-76.
-
(2005)
Nat Genet
, vol.37
, pp. 73-76
-
-
Aharoni, A.1
Gaidukov, L.2
Khersonsky, O.3
Mc, Q.G.S.4
Roodveldt, C.5
Tawfik, D.S.6
-
11
-
-
2342569704
-
Structure and evolution of the serum paraoxo-nase family of detoxifying and anti-atherosclerotic enzymes
-
Harel M, Aharoni A, Gaidukov L, Brumshtein B, Khersonsky O, Meged R, Dvir H, Ravelli RB, McCarthy A, Toker L, Silman I, Suss-man JL, Tawfik DS. Structure and evolution of the serum paraoxo-nase family of detoxifying and anti-atherosclerotic enzymes. Nat Struct Mol Biol 2004;11:412-419.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 412-419
-
-
Harel, M.1
Aharoni, A.2
Gaidukov, L.3
Brumshtein, B.4
Khersonsky, O.5
Meged, R.6
Dvir, H.7
Ravelli, R.B.8
McCarthy, A.9
Toker, L.10
Silman, I.11
Suss-man, J.L.12
Tawfik, D.S.13
-
12
-
-
0034972434
-
Crystal structure of diisopropylfluorophosphatase from Loligo vulgaris
-
Scharff EI, Koepke J, Fritzsch G, Lucke C, Ruterjans H. Crystal structure of diisopropylfluorophosphatase from Loligo vulgaris. Structure 2001;9:493-502.
-
(2001)
Structure
, vol.9
, pp. 493-502
-
-
Scharff, E.I.1
Koepke, J.2
Fritzsch, G.3
Lucke, C.4
Ruterjans, H.5
-
13
-
-
18444379944
-
Analysis of active-site amino-acid residues of human serum paraoxonase using competitive substrates
-
Yeung DT, Lenz DE, Cerasoli DM. Analysis of active-site amino-acid residues of human serum paraoxonase using competitive substrates. FEBS J 2005;272:2225-2230.
-
(2005)
FEBS J
, vol.272
, pp. 2225-2230
-
-
Yeung, D.T.1
Lenz, D.E.2
Cerasoli, D.M.3
-
14
-
-
33749510670
-
Binding of a designed substrate analogue to diisopropyl fluorophosphatase: Implications for the phosphotriesterase mechanism
-
Blum MM, Lohr F, Richardt A, Ruterjans H, Chen JC. Binding of a designed substrate analogue to diisopropyl fluorophosphatase: implications for the phosphotriesterase mechanism. J Am Chem Soc 2006;128:12750-12757.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 12750-12757
-
-
Blum, M.M.1
Lohr, F.2
Richardt, A.3
Ruterjans, H.4
Chen, J.C.5
-
15
-
-
0038541445
-
The active site of human paraoxonase (PON1)
-
Josse D, Lockridge O, Xie W, Bartels CF, Schopfer LM, Masson P. The active site of human paraoxonase (PON1). J Appl Toxicol 2001;21(suppl 1):S7-S11.
-
(2001)
J Appl Toxicol
, vol.21
, Issue.SUPPL. 1
-
-
Josse, D.1
Lockridge, O.2
Xie, W.3
Bartels, C.F.4
Schopfer, L.M.5
Masson, P.6
-
16
-
-
0033064116
-
Human serum paraoxonase (PON1): Identification of essential amino acid residues by group-selective labelling and site-directed mutagenesis
-
Josse D, Xie W, Masson P, Lockridge O. Human serum paraoxonase (PON1): identification of essential amino acid residues by group-selective labelling and site-directed mutagenesis. Chem Biol Interact 1999;119-120:71-78.
-
(1999)
Chem Biol Interact
-
-
Josse, D.1
Xie, W.2
Masson, P.3
Lockridge, O.4
-
17
-
-
33646373929
-
The histidine 115-histidine 134 dyad mediates the lactonase activity of mammalian serum paraoxonases
-
Khersonsky O, Tawfik DS. The histidine 115-histidine 134 dyad mediates the lactonase activity of mammalian serum paraoxonases. J Biol Chem 2006;281:7649-7656.
-
(2006)
J Biol Chem
, vol.281
, pp. 7649-7656
-
-
Khersonsky, O.1
Tawfik, D.S.2
-
18
-
-
34347252999
-
Paraoxonase (PON1) polymorphism and activity as the determinants of sensitivity to organophosphates in human subjects
-
Sirivarasai J, Kaojarern S, Yoovathaworn K, Sura T. Paraoxonase (PON1) polymorphism and activity as the determinants of sensitivity to organophosphates in human subjects. Chem Biol Interact 2007;168:184-192.
-
(2007)
Chem Biol Interact
, vol.168
, pp. 184-192
-
-
Sirivarasai, J.1
Kaojarern, S.2
Yoovathaworn, K.3
Sura, T.4
-
19
-
-
0347635518
-
Directed evolution of mammalian paraoxonases PON1 and PON3 for bacterial expression and catalytic specialization
-
Aharoni A, Gaidukov L, Yagur S, Toker L, Silman I, Tawfik DS. Directed evolution of mammalian paraoxonases PON1 and PON3 for bacterial expression and catalytic specialization. Proc Natl Acad Sci USA 2004;101:482-487.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 482-487
-
-
Aharoni, A.1
Gaidukov, L.2
Yagur, S.3
Toker, L.4
Silman, I.5
Tawfik, D.S.6
-
20
-
-
33646263118
-
Enhanced stereoselective hydrolysis of toxic organo-phosphates by directly evolved variants of mammalian serum para-oxonase
-
Amitai G, Gaidukov L, Adani R, Yishay S, Yacov G, Kushnir M, Teitlboim S, Lindenbaum M, Bel P, Khersonsky O, Tawfik DS, Meshulam H. Enhanced stereoselective hydrolysis of toxic organo-phosphates by directly evolved variants of mammalian serum para-oxonase. FEBS J 2006;273:1906-1919.
-
(2006)
FEBS J
, vol.273
, pp. 1906-1919
-
-
Amitai, G.1
Gaidukov, L.2
Adani, R.3
Yishay, S.4
Yacov, G.5
Kushnir, M.6
Teitlboim, S.7
Lindenbaum, M.8
Bel, P.9
Khersonsky, O.10
Tawfik, D.S.11
Meshulam, H.12
-
21
-
-
4644228437
-
Structure/function analyses of human serum paraoxonase (HuPON1) mutants designed from a DFPase-like homology model
-
Yeung DT, Josse D, Nicholson JD, Khanal A, McAndrew CW, Bahn-son BJ, Lenz DE, Cerasoli DM. Structure/function analyses of human serum paraoxonase (HuPON1) mutants designed from a DFPase-like homology model. Biochim Biophys Acta 2004;1702: 67-77.
-
(2004)
Biochim Biophys Acta
, vol.1702
, pp. 67-77
-
-
Yeung, D.T.1
Josse, D.2
Nicholson, J.D.3
Khanal, A.4
McAndrew, C.W.5
Bahn-son, B.J.6
Lenz, D.E.7
Cerasoli, D.M.8
-
22
-
-
66449090483
-
-
SYBYL. Molecular Modelling Software, V7.0. St. Louis, MO: Tripos Associates; 2004.
-
SYBYL. Molecular Modelling Software, V7.0. St. Louis, MO: Tripos Associates; 2004.
-
-
-
-
23
-
-
66449115633
-
A software pipeline for protein structure prediction
-
Orlando, FL
-
Lee M, Yeh I-C, Zavaljevski N, Wilson P, Reifman J. A software pipeline for protein structure prediction. Proceedings of the 25th Army Science Conference, Orlando, FL, 2006.
-
(2006)
Proceedings of the 25th Army Science Conference
-
-
Lee, M.1
Yeh, I.-C.2
Zavaljevski, N.3
Wilson, P.4
Reifman, J.5
-
24
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
Sippl MJ. Recognition of errors in three-dimensional structures of proteins. Proteins 1993;17:355-362.
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
26
-
-
66449131577
-
-
Case DA, Darden T, Cheatham TE, III, Simmerling CL, Wang J, Duke RE, Luo R, Merz KM, Wang B, Pearlman DA, Crowley M, Brozell S, Tsui V, Gohlke H, Mongan J, Hornak V, Cui G, Beroza P, Schafmeister C, Caldwell JW, Ross WS, Kollman PA. AMBER 9. San Francisco: University of California; 2006.
-
Case DA, Darden T, Cheatham TE, III, Simmerling CL, Wang J, Duke RE, Luo R, Merz KM, Wang B, Pearlman DA, Crowley M, Brozell S, Tsui V, Gohlke H, Mongan J, Hornak V, Cui G, Beroza P, Schafmeister C, Caldwell JW, Ross WS, Kollman PA. AMBER 9. San Francisco: University of California; 2006.
-
-
-
-
27
-
-
33646940952
-
Numerical integration of the Cartesian equation of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen JC. Numerical integration of the Cartesian equation of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 1977;23:327-341.
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, J.C.3
-
28
-
-
33846823909
-
Particle mesh Ewald-an N.Log(N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L. Particle mesh Ewald-an N.Log(N) method for Ewald sums in large systems. J Chem Phys 1993;98: 10089-10092.
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
29
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HC, Postma JPM, van Gunsteren WF, DiNole A, Haak J. Molecular dynamics with coupling to an external bath. J Chem Phys 1984;81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
DiNole, A.4
Haak, J.5
-
30
-
-
33947716119
-
A semiempirical free energy force field with charge-based desolvation
-
Huey R, Morris GM, Olson AJ, Goodsell DS. A semiempirical free energy force field with charge-based desolvation. J Comput Chem 2007;28:1145-1152.
-
(2007)
J Comput Chem
, vol.28
, pp. 1145-1152
-
-
Huey, R.1
Morris, G.M.2
Olson, A.J.3
Goodsell, D.S.4
-
31
-
-
40749120187
-
DOVIS: An implementation for high-throughput virtual screening using Auto-Dock
-
Zhang S, Kumar K, Jiang X, Wallqvist A, Reifman J. DOVIS: an implementation for high-throughput virtual screening using Auto-Dock. BMC Bioinformatics 2008;9:126.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 126
-
-
Zhang, S.1
Kumar, K.2
Jiang, X.3
Wallqvist, A.4
Reifman, J.5
-
32
-
-
0032466648
-
Continuum solvent studies of the stability of RNA hairpin loops and helices
-
Srinivasan J, Miller J, Kollman PA, Case DA. Continuum solvent studies of the stability of RNA hairpin loops and helices. J Biomol Struct Dyn 1998;16:671-682.
-
(1998)
J Biomol Struct Dyn
, vol.16
, pp. 671-682
-
-
Srinivasan, J.1
Miller, J.2
Kollman, P.A.3
Case, D.A.4
-
33
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, Chong L, Lee M, Lee T, Duan Y, Wang W, Donini O, Cieplak P, Srinivasan J, Case DA, Cheatham TE, III. Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 2000;33:889-897.
-
(2000)
Acc Chem Res
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
Cieplak, P.12
Srinivasan, J.13
Case, D.A.14
Cheatham III, T.E.15
-
34
-
-
20644449471
-
Modification of the generalized Born model suitable for macromolecules
-
Onufriev A, Bashford D, Case DA. Modification of the generalized Born model suitable for macromolecules. J Phys Chem B 2000;104: 3712-3720.
-
(2000)
J Phys Chem B
, vol.104
, pp. 3712-3720
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
35
-
-
0030040323
-
Reduced surface: An efficient way to compute molecular surfaces
-
Sanner MF, Olson AJ, Spehner JC. Reduced surface: an efficient way to compute molecular surfaces. Biopolymers 1996;38:305-320.
-
(1996)
Biopolymers
, vol.38
, pp. 305-320
-
-
Sanner, M.F.1
Olson, A.J.2
Spehner, J.C.3
-
36
-
-
0042710087
-
Computational alanine scanning to probe protein-protein interactions: A novel approach to evaluate binding free energies
-
Massova I, Kollman PA. Computational alanine scanning to probe protein-protein interactions: a novel approach to evaluate binding free energies. J Am Chem Soc 1999;121:8133-8143.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 8133-8143
-
-
Massova, I.1
Kollman, P.A.2
|