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Volumn 9, Issue , 2009, Pages

Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA - Implications for the catalytic mechanism of parvulins

Author keywords

[No Author keywords available]

Indexed keywords

HISTIDINE; LIPOPROTEIN; PARVULIN; PEPTIDYLPROLYL ISOMERASE; PRSA PROTEIN; UNCLASSIFIED DRUG; ENZYME INHIBITOR; NIMA INTERACTING PEPTIDYLPROLYL ISOMERASE; NIMA-INTERACTING PEPTIDYLPROLYL ISOMERASE;

EID: 66149149408     PISSN: None     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-9-17     Document Type: Article
Times cited : (37)

References (41)
  • 2
    • 2442446271 scopus 로고    scopus 로고
    • Structure-function analysis of PrsA reveals roles for the parvulin-like and flanking N- and C-terminal domains in protein folding and secretion in Bacillus subtilis
    • 10.1074/jbc.M400861200 14976191
    • Structure-function analysis of PrsA reveals roles for the parvulin-like and flanking N- and C-terminal domains in protein folding and secretion in Bacillus subtilis. M Vitikainen I Lappalainen R Seppala H Antelmann H Boer S Taira H Savilahti M Hecker M Vihinen M Sarvas VP Kontinen, J Biol Chem 2004 279 19302 19314 10.1074/jbc.M400861200 14976191
    • (2004) J Biol Chem , vol.279 , pp. 19302-19314
    • Vitikainen, M.1    Lappalainen, I.2    Seppala, R.3    Antelmann, H.4    Boer, H.5    Taira, S.6    Savilahti, H.7    Hecker, M.8    Vihinen, M.9    Sarvas, M.10    Kontinen, V.P.11
  • 4
    • 28444439801 scopus 로고    scopus 로고
    • Insights into the catalytic mechanism of peptidyl prolyl cis/trans isomerases
    • 10.2741/1494 15353370
    • Insights into the catalytic mechanism of peptidyl prolyl cis/trans isomerases. J Fanghänel G Fischer, Front Biosci 2004 9 3453 3478 10.2741/1494 15353370
    • (2004) Front Biosci , vol.9 , pp. 3453-3478
    • Fanghänel, J.1    Fischer, G.2
  • 5
    • 0008233581 scopus 로고    scopus 로고
    • Structural and functional analysis of the mitotic rotamase Pin1 suggests substrate recognition is phosphorylation dependent
    • Structural and functional analysis of the mitotic rotamase Pin1 suggests substrate recognition is phosphorylation dependent. R Ranganathan KP Lu T Hunter JP Noel, Cell 1997 89 875 886 10.1016/S0092-8674(00)80273-1 9200606 (Pubitemid 27513514)
    • (1997) Cell , vol.89 , Issue.6 , pp. 875-886
    • Ranganathan, R.1    Lu, K.P.2    Hunter, T.3    Noel, J.P.4
  • 6
    • 0038448924 scopus 로고    scopus 로고
    • Structural analysis of the mitotic regulator hPin1 in solution. Insights into domain architecture and substrate binding
    • 10.1074/jbc.M300721200 12721297
    • Structural analysis of the mitotic regulator hPin1 in solution. Insights into domain architecture and substrate binding. E Bayer S Goettsch JW Mueller B Griewel E Guiberman LM Mayr P Bayer, J Biol Chem 2003 278 26183 26193 10.1074/jbc.M300721200 12721297
    • (2003) J Biol Chem , vol.278 , pp. 26183-26193
    • Bayer, E.1    Goettsch, S.2    Mueller, J.W.3    Griewel, B.4    Guiberman, E.5    Mayr, L.M.6    Bayer, P.7
  • 7
    • 0034714176 scopus 로고    scopus 로고
    • NMR solution structure of hPar14 reveals similarity to the peptidyl prolyl cis/trans isomerase domain of the mitotic regulator hPin1 but indicates a different functionality of the protein
    • 10.1006/jmbi.2000.4013 10966801
    • NMR solution structure of hPar14 reveals similarity to the peptidyl prolyl cis/trans isomerase domain of the mitotic regulator hPin1 but indicates a different functionality of the protein. E Sekerina JU Rahfeld J Muller J Fanghanel C Rascher G Fischer P Bayer, J Mol Biol 2000 301 1003 1017 10.1006/jmbi.2000.4013 10966801
    • (2000) J Mol Biol , vol.301 , pp. 1003-1017
    • Sekerina, E.1    Rahfeld, J.U.2    Muller, J.3    Fanghanel, J.4    Rascher, C.5    Fischer, G.6    Bayer, P.7
  • 8
    • 0036296327 scopus 로고    scopus 로고
    • Solution structure of the single-domain prolyl cis/trans isomerase PIN1At from Arabidopsis thaliana
    • 10.1016/S0022-2836(02)00429-1 12079389
    • Solution structure of the single-domain prolyl cis/trans isomerase PIN1At from Arabidopsis thaliana. I Landrieu JM Wieruszeski R Wintjens D Inze G Lippens, J Mol Biol 2002 320 321 332 10.1016/S0022-2836(02)00429-1 12079389
    • (2002) J Mol Biol , vol.320 , pp. 321-332
    • Landrieu, I.1    Wieruszeski, J.M.2    Wintjens, R.3    Inze, D.4    Lippens, G.5
  • 9
    • 4344679004 scopus 로고    scopus 로고
    • Solution structure of Escherichia coli Par10: The prototypic member of the Parvulin family of peptidyl-prolyl cis/trans isomerases
    • 15322281 10.1110/ps.04756704
    • Solution structure of Escherichia coli Par10: The prototypic member of the Parvulin family of peptidyl-prolyl cis/trans isomerases. A Kuehlewein G Voll BH Alvarez H Kessler G Fischer JU Rahfeld G Gemmecker, Protein Sci 2004 13 2378 2387 15322281 10.1110/ps.04756704
    • (2004) Protein Sci , vol.13 , pp. 2378-2387
    • Kuehlewein, A.1    Voll, G.2    Alvarez, B.H.3    Kessler, H.4    Fischer, G.5    Rahfeld, J.U.6    Gemmecker, G.7
  • 10
    • 0036849659 scopus 로고    scopus 로고
    • Crystallographic structure of SurA, a molecular chaperone that facilitates folding of outer membrane porins
    • 10.1016/S0969-2126(02)00877-8 12429090
    • Crystallographic structure of SurA, a molecular chaperone that facilitates folding of outer membrane porins. E Bitto DB McKay, Structure 2002 10 1489 1498 10.1016/S0969-2126(02)00877-8 12429090
    • (2002) Structure , vol.10 , pp. 1489-1498
    • Bitto, E.1    McKay, D.B.2
  • 11
    • 17644385551 scopus 로고    scopus 로고
    • The structure of the Candida albicans Ess1 prolyl isomerase reveals a well-ordered linker that restricts domain mobility
    • 10.1021/bi050115l 15835905
    • The structure of the Candida albicans Ess1 prolyl isomerase reveals a well-ordered linker that restricts domain mobility. Z Li H Li G Devasahayam T Gemmill V Chaturvedi SD Hanes P Van Roey, Biochemistry 2005 44 6180 6189 10.1021/bi050115l 15835905
    • (2005) Biochemistry , vol.44 , pp. 6180-6189
    • Li, Z.1    Li, H.2    Devasahayam, G.3    Gemmill, T.4    Chaturvedi, V.5    Hanes, S.D.6    Van Roey, P.7
  • 12
    • 33644929984 scopus 로고    scopus 로고
    • NMR solution structure and characterization of substrate binding site of the PPIase domain of PrsA protein from Bacillus subtilis
    • 10.1016/j.febslet.2006.02.042 16516208
    • NMR solution structure and characterization of substrate binding site of the PPIase domain of PrsA protein from Bacillus subtilis. H Tossavainen P Permi SL Purhonen M Sarvas I Kilpeläinen R Seppala, FEBS Lett 2006 580 1822 1826 10.1016/j.febslet.2006.02.042 16516208
    • (2006) FEBS Lett , vol.580 , pp. 1822-1826
    • Tossavainen, H.1    Permi, P.2    Purhonen, S.L.3    Sarvas, M.4    Kilpeläinen, I.5    Seppala, R.6
  • 14
    • 0036308102 scopus 로고    scopus 로고
    • Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
    • 10.1016/S0022-2836(02)00241-3 12051947
    • Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. T Herrmann P Güntert K Wüthrich, J Mol Biol 2002 319 209 227 10.1016/S0022-2836(02)00241-3 12051947
    • (2002) J Mol Biol , vol.319 , pp. 209-227
    • Herrmann, T.1    Güntert, P.2    Wüthrich, K.3
  • 17
    • 0030047142 scopus 로고    scopus 로고
    • Errors in protein structures [3]
    • Errors in protein structures. RWW Hooft G Vriend C Sander EE Abola, Nature 1996 381 272 272 10.1038/381272a0 8692262 (Pubitemid 26000124)
    • (1996) Nature , vol.381 , Issue.6580 , pp. 272
    • Hooft, R.W.W.1    Vriend, G.2    Sander, C.3    Abola, E.E.4
  • 18
    • 0032576146 scopus 로고    scopus 로고
    • Determination of protonation and deprotonation and tautomeric states of histidine residues in large proteins using nitrogen-carbon J couplings in imidazole ring
    • 10.1021/ja982153g
    • Determination of protonation and deprotonation and tautomeric states of histidine residues in large proteins using nitrogen-carbon J couplings in imidazole ring. N Shimba H Takahashi M Sakakura I Fujii I Shimada, J Am Chem Soc 1998 120 10988 10989 10.1021/ja982153g
    • (1998) J Am Chem Soc , vol.120 , pp. 10988-10989
    • Shimba, N.1    Takahashi, H.2    Sakakura, M.3    Fujii, I.4    Shimada, I.5
  • 20
    • 0028349613 scopus 로고
    • A novel peptidyl-prolyl cis/trans isomerase from Escherichia coli
    • 10.1016/0014-5793(94)80608-X 8163020
    • A novel peptidyl-prolyl cis/trans isomerase from Escherichia coli. J-U Rahfeld A Schierhornb K Mannc G Fischer, FEBS Lett 1994 343 65 69 10.1016/0014-5793(94)80608-X 8163020
    • (1994) FEBS Lett , vol.343 , pp. 65-69
    • Rahfeld, J.-U.1    Schierhornb, A.2    Mannc, K.3    Fischer, G.4
  • 22
    • 34848907217 scopus 로고    scopus 로고
    • Molecular mechanisms of the phospho-dependent prolyl cis/trans isomerase Pin1
    • 10.1111/j.1742-4658.2007.06057.x 17892493
    • Molecular mechanisms of the phospho-dependent prolyl cis/trans isomerase Pin1. G Lippens I Landrieu C Smet, FEBS J 2007 274 5211 5222 10.1111/j.1742-4658.2007.06057.x 17892493
    • (2007) FEBS J , vol.274 , pp. 5211-5222
    • Lippens, G.1    Landrieu, I.2    Smet, C.3
  • 23
    • 55249125918 scopus 로고    scopus 로고
    • The dual histidine motif in the active site of Pin1 has a structural rather than catalytic role
    • 10.1021/bi800964q 18844375
    • The dual histidine motif in the active site of Pin1 has a structural rather than catalytic role. ML Bailey BH Shilton CJ Brandl DW Litchfield, Biochemistry 2008 47 11481 11489 10.1021/bi800964q 18844375
    • (2008) Biochemistry , vol.47 , pp. 11481-11489
    • Bailey, M.L.1    Shilton, B.H.2    Brandl, C.J.3    Litchfield, D.W.4
  • 24
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • 10.1006/jmbi.1993.1489 8377180
    • Protein structure comparison by alignment of distance matrices. L Holm C Sander, J Mol Biol 1993 233 123 138 10.1006/jmbi.1993.1489 8377180
    • (1993) J Mol Biol , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 25
    • 0014689979 scopus 로고
    • Role of a buried acid group in the mechanism of action of chymotrypsin
    • 10.1038/221337a0 5764436
    • Role of a buried acid group in the mechanism of action of chymotrypsin. DM Blow J Birktoft BS Hartley, Nature 1969 221 337 340 10.1038/221337a0 5764436
    • (1969) Nature , vol.221 , pp. 337-340
    • Blow, D.M.1    Birktoft, J.2    Hartley, B.S.3
  • 26
    • 0026511332 scopus 로고
    • Mip protein of Legionella pneumophila exhibits peptidyl-prolyl-cis/trans isomerase (PPlase) activity
    • 10.1111/j.1365-2958.1992.tb00858.x 1379319
    • Mip protein of Legionella pneumophila exhibits peptidyl-prolyl-cis/trans isomerase (PPlase) activity. G Fischer H Bang B Ludwig K Mann J Hacker, Mol Microbiol 1992 6 1375 1383 10.1111/j.1365-2958.1992.tb00858.x 1379319
    • (1992) Mol Microbiol , vol.6 , pp. 1375-1383
    • Fischer, G.1    Bang, H.2    Ludwig, B.3    Mann, K.4    Hacker, J.5
  • 27
    • 0036360446 scopus 로고    scopus 로고
    • Intraresidual HNCA: An experiment for correlating only intraresidual backbone resonances
    • 10.1023/A:1019819514298 12238592
    • Intraresidual HNCA: An experiment for correlating only intraresidual backbone resonances. P Permi, J Biomol NMR 2002 23 201 209 10.1023/A: 1019819514298 12238592
    • (2002) J Biomol NMR , vol.23 , pp. 201-209
    • Permi, P.1
  • 28
    • 0347722841 scopus 로고    scopus 로고
    • Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients
    • PII S0079656598000259
    • Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients. M Sattler J Schleucher C Griesinger, Prog Nucl Magn Res Spectros 1999 34 93 158 10.1016/S0079-6565(98)00025-9 (Pubitemid 129595216)
    • (1999) Progress in Nuclear Magnetic Resonance Spectroscopy , vol.34 , Issue.2 , pp. 93-158
    • Sattler, M.1    Schleucher, J.2    Griesinger, C.3
  • 29
    • 1842486878 scopus 로고    scopus 로고
    • Coherence transfer in proteins
    • 10.1016/j.pnmrs.2003.12.001
    • Coherence transfer in proteins. P Permi A Annila, Prog Nucl Magn Res Spectros 2004 44 97 137 10.1016/j.pnmrs.2003.12.001
    • (2004) Prog Nucl Magn Res Spectros , vol.44 , pp. 97-137
    • Permi, P.1    Annila, A.2
  • 31
    • 0004040543 scopus 로고    scopus 로고
    • University of California, San Francisco, CA
    • Sparky 3. TD Goddard DG Kneller, University of California, San Francisco, CA 2004
    • (2004) Sparky 3
    • Goddard, T.D.1    Kneller, D.G.2
  • 32
    • 0033003335 scopus 로고    scopus 로고
    • Protein backbone angle restraints from searching a database for chemical shift and sequence homology
    • 10.1023/A:1008392405740 10212987
    • Protein backbone angle restraints from searching a database for chemical shift and sequence homology. G Cornilescu F Delaglio A Bax, J Biomol NMR 1999 13 289 302 10.1023/A:1008392405740 10212987
    • (1999) J Biomol NMR , vol.13 , pp. 289-302
    • Cornilescu, G.1    Delaglio, F.2    Bax, A.3
  • 33
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • 10.1016/0263-7855(96)00009-4 8744573
    • MOLMOL: A program for display and analysis of macromolecular structures. R Koradi M Billeter K Wüthrich, J Mol Graph 1996 14 51 55 10.1016/0263-7855(96)00009-4 8744573
    • (1996) J Mol Graph , vol.14 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3
  • 35
    • 0035542670 scopus 로고    scopus 로고
    • 15N relaxation times from T
    • 1 and T2 linewidths 10.1006/jmre.2001.2383 11531353
    • 15N relaxation times from T 1 and T 2 linewidths. S Heikkinen I Kilpeläinen, J Magn Reson 2001 151 314 319 10.1006/jmre.2001.2383 11531353
    • (2001) J Magn Reson , vol.151 , pp. 314-319
    • Heikkinen, S.1    Kilpeläinen, I.2
  • 36
    • 0347063930 scopus 로고    scopus 로고
    • 15N relaxation times by inverse Laplace transformation
    • 10.1002/mrc.1309 14745818
    • 15N relaxation times by inverse Laplace transformation. H Koskela I Kilpeläinen S Heikkinen, Magn Reson Chem 2004 42 61 65 10.1002/mrc.1309 14745818
    • (2004) Magn Reson Chem , vol.42 , pp. 61-65
    • Koskela, H.1    Kilpeläinen, I.2    Heikkinen, S.3
  • 38
    • 0028941877 scopus 로고
    • Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
    • 10.1006/jmbi.1994.0073 7531772
    • Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme. AM Mandel M Akke AG Palmer, J Mol Biol 1995 246 144 163 10.1006/jmbi.1994.0073 7531772
    • (1995) J Mol Biol , vol.246 , pp. 144-163
    • Mandel, A.M.1    Akke, M.2    Palmer, A.G.3
  • 39
    • 12044256620 scopus 로고
    • 13C heteronuclear NMR spectroscopy
    • 10.1021/ja00012a001
    • 13C heteronuclear NMR spectroscopy. AG Palmer M Rance PE Wright, J Am Chem Soc 1991 113 4371 4380 10.1021/ja00012a001
    • (1991) J Am Chem Soc , vol.113 , pp. 4371-4380
    • Palmer, A.G.1    Rance, M.2    Wright, P.E.3
  • 40
    • 0038068865 scopus 로고    scopus 로고
    • FAST-Modelfree: A program for rapid automated analysis of solution NMR spin-relaxation data
    • 10.1023/A:1023808801134 12766418
    • FAST-Modelfree: a program for rapid automated analysis of solution NMR spin-relaxation data. R Cole JP Loria, J Biomol NMR 2003 26 203 213 10.1023/A:1023808801134 12766418
    • (2003) J Biomol NMR , vol.26 , pp. 203-213
    • Cole, R.1    Loria, J.P.2
  • 41
    • 33847787871 scopus 로고    scopus 로고
    • Rapid and accurate processing method for amide proton exchange rate measurement in proteins
    • 10.1007/s10858-007-9145-y 17340206
    • Rapid and accurate processing method for amide proton exchange rate measurement in proteins. H Koskela O Heikkinen I Kilpeläinen S Heikkinen, J Biomol NMR 2007 37 313 320 10.1007/s10858-007-9145-y 17340206
    • (2007) J Biomol NMR , vol.37 , pp. 313-320
    • Koskela, H.1    Heikkinen, O.2    Kilpeläinen, I.3    Heikkinen, S.4


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